Strain Fitness in Escherichia fergusonii Becca around EFB2_01754

Experiment: phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2)
1,855,134	+		EFB2_01752	0.59	-0.6
1,855,139	+		EFB2_01752	0.63	-2.1
1,855,139	+		EFB2_01752	0.63	+1.2
1,855,139	+		EFB2_01752	0.63	-1.7
1,855,139	+		EFB2_01752	0.63	-0.7
1,855,139	+		EFB2_01752	0.63	-1.6
1,855,139	+		EFB2_01752	0.63	+0.6
1,855,139	+		EFB2_01752	0.63	-1.3
1,855,139	+		EFB2_01752	0.63	-0.6
1,855,140	-		EFB2_01752	0.64	-2.2
1,855,142	+		EFB2_01752	0.66	+0.9
1,855,162	+		EFB2_01752	0.82	+1.0
1,855,163	-		EFB2_01752	0.83	-1.5
1,855,163	-		EFB2_01752	0.83	+1.4
1,855,163	-		EFB2_01752	0.83	-1.2
1,855,183	+				-2.8
1,855,183	+				-2.1
1,855,183	+				+0.7
1,855,183	+				+0.5
1,855,183	+				-1.4
1,855,183	+				+1.4
1,855,183	+				-2.1
1,855,183	+				-0.3
1,855,184	-				+0.9
1,855,184	-				+0.8
1,855,184	-				-0.5
1,855,203	+				+0.6
1,855,203	+				-0.9
1,855,203	+				-3.3
1,855,203	+				+1.0
1,855,204	-				+1.3
1,855,206	+				+1.7
1,855,255	+				-0.6
1,855,255	+				-1.9
1,855,256	-				-1.5
1,855,256	-				-2.4
1,855,256	-				+0.8
1,855,256	-				-0.8
1,855,256	-				-0.3
1,855,262	-				-2.1
1,855,288	+				-0.2
1,855,328	+				-0.3
1,855,344	+				-2.1
1,855,344	+				+1.3
1,855,344	+				-0.3
1,855,344	+				-1.2
1,855,344	+				-0.3
1,855,344	+				+1.1
1,855,344	+				+0.8
1,855,344	+				+1.9
1,855,344	+				+1.8
1,855,344	+				-2.4
1,855,344	+				-1.8
1,855,344	+				+1.4
1,855,344	+				-0.2
1,855,344	+				-0.9
1,855,345	-				-2.1
1,855,345	-				-1.4
1,855,345	-				+0.9
1,855,345	-				-0.8
1,855,345	-				+0.1
1,855,345	-				-2.3
1,855,388	+				-2.2
1,855,388	+				+0.9
1,855,389	-				-1.4
1,855,452	+		EFB2_01753	0.14	-2.8
1,855,453	-		EFB2_01753	0.14	-1.1
1,855,453	-		EFB2_01753	0.14	-1.1
1,855,461	+		EFB2_01753	0.15	-3.1
1,855,462	-		EFB2_01753	0.15	-1.2
1,855,497	+		EFB2_01753	0.19	-0.7
1,855,551	+		EFB2_01753	0.26	+1.3
1,855,715	+		EFB2_01753	0.47	-1.2
1,855,715	+		EFB2_01753	0.47	-1.2
1,855,716	-		EFB2_01753	0.47	-2.1
1,855,723	-		EFB2_01753	0.48	-1.5
1,855,723	-		EFB2_01753	0.48	+0.7
1,855,746	-		EFB2_01753	0.51	-3.3
1,855,746	-		EFB2_01753	0.51	+1.3
1,855,746	-		EFB2_01753	0.51	-0.5
1,855,746	-		EFB2_01753	0.51	+0.1
1,855,746	-		EFB2_01753	0.51	-1.6
1,855,797	+		EFB2_01753	0.57	-0.1
1,855,870	+		EFB2_01753	0.67	+1.9
1,855,870	+		EFB2_01753	0.67	-1.1
1,855,870	+		EFB2_01753	0.67	-0.3
1,855,870	+		EFB2_01753	0.67	-0.6
1,855,870	+		EFB2_01753	0.67	-2.7
1,855,870	+		EFB2_01753	0.67	-0.3
1,855,870	+		EFB2_01753	0.67	-2.0
1,855,870	+		EFB2_01753	0.67	-1.0
1,855,870	+		EFB2_01753	0.67	+0.3
1,855,870	+		EFB2_01753	0.67	+0.7
1,855,870	+		EFB2_01753	0.67	-3.1
1,855,870	+		EFB2_01753	0.67	+0.9
1,855,870	+		EFB2_01753	0.67	-0.9
1,855,870	+		EFB2_01753	0.67	-0.4
1,855,871	-		EFB2_01753	0.67	-1.4
1,855,871	-		EFB2_01753	0.67	-2.1
1,855,871	-		EFB2_01753	0.67	+2.1
1,855,871	-		EFB2_01753	0.67	-0.6
1,855,871	-		EFB2_01753	0.67	-2.8
1,855,871	-		EFB2_01753	0.67	+0.1
1,855,871	-		EFB2_01753	0.67	-1.5
1,855,871	-		EFB2_01753	0.67	-0.1
1,855,871	-		EFB2_01753	0.67	-1.4
1,855,890	+		EFB2_01753	0.69	-1.4
1,855,890	+		EFB2_01753	0.69	-2.1
1,855,890	+		EFB2_01753	0.69	+2.3
1,855,890	+		EFB2_01753	0.69	+0.1
1,855,890	+		EFB2_01753	0.69	+1.0
1,855,890	+		EFB2_01753	0.69	-2.4
1,855,890	+		EFB2_01753	0.69	-1.5
1,855,890	+		EFB2_01753	0.69	+0.8
1,855,890	+		EFB2_01753	0.69	+0.4
1,855,890	+		EFB2_01753	0.69	+0.9
1,855,891	-		EFB2_01753	0.69	-1.0
1,855,891	-		EFB2_01753	0.69	+0.1
1,855,891	-		EFB2_01753	0.69	+1.5
1,855,935	-		EFB2_01753	0.75	-0.6
1,855,935	-		EFB2_01753	0.75	+1.2
1,855,983	-		EFB2_01753	0.81	-2.2
1,855,992	+		EFB2_01753	0.82	-0.6
1,856,141	+				+1.4
1,856,142	-				+0.2
1,856,142	-				-0.4
1,856,142	-				-1.1
1,856,162	+				-1.1
1,856,162	+				-0.5
1,856,163	-				-1.4
1,856,201	+				-2.4
1,856,201	+				+0.5
1,856,202	-				-0.7
1,856,226	+		EFB2_01754	0.12	-1.8
1,856,226	+		EFB2_01754	0.12	-1.1
1,856,226	+		EFB2_01754	0.12	-0.7
1,856,240	+		EFB2_01754	0.14	-3.1
1,856,240	+		EFB2_01754	0.14	-2.6
1,856,240	+		EFB2_01754	0.14	-1.4
1,856,240	+		EFB2_01754	0.14	-0.3
1,856,240	+		EFB2_01754	0.14	-0.1
1,856,240	+		EFB2_01754	0.14	+1.7
1,856,240	+		EFB2_01754	0.14	+0.9
1,856,240	+		EFB2_01754	0.14	-0.7
1,856,240	+		EFB2_01754	0.14	+2.1
1,856,241	-		EFB2_01754	0.14	+1.0
1,856,241	-		EFB2_01754	0.14	+0.2
1,856,241	-		EFB2_01754	0.14	-2.1
1,856,241	-		EFB2_01754	0.14	+2.3
1,856,243	+		EFB2_01754	0.14	+0.5
1,856,243	+		EFB2_01754	0.14	+0.4
1,856,244	-		EFB2_01754	0.14	+0.9
1,856,275	+		EFB2_01754	0.18	-2.2
1,856,275	+		EFB2_01754	0.18	+0.6
1,856,275	+		EFB2_01754	0.18	+1.8
1,856,275	+		EFB2_01754	0.18	+0.1
1,856,275	+		EFB2_01754	0.18	-0.3
1,856,275	+		EFB2_01754	0.18	-1.0
1,856,275	+		EFB2_01754	0.18	+0.4
1,856,275	+		EFB2_01754	0.18	+1.1
1,856,276	-		EFB2_01754	0.18	+0.4
1,856,276	-		EFB2_01754	0.18	-2.2
1,856,276	-		EFB2_01754	0.18	-1.8
1,856,358	-		EFB2_01754	0.28	-0.5
1,856,418	+		EFB2_01754	0.36	+1.3
1,856,419	-		EFB2_01754	0.36	-1.2
1,856,437	+		EFB2_01754	0.38	-2.5
1,856,438	-		EFB2_01754	0.38	-1.6
1,856,438	-		EFB2_01754	0.38	+0.5
1,856,450	+		EFB2_01754	0.40	-1.1
1,856,451	-		EFB2_01754	0.40	-1.7
1,856,498	+		EFB2_01754	0.46	-1.3
1,856,498	+		EFB2_01754	0.46	-1.2
1,856,498	+		EFB2_01754	0.46	+0.7
1,856,498	+		EFB2_01754	0.46	-1.4
1,856,499	-		EFB2_01754	0.46	-2.3
1,856,499	-		EFB2_01754	0.46	+0.8
1,856,499	-		EFB2_01754	0.46	-0.1
1,856,515	+		EFB2_01754	0.48	+0.9
1,856,516	-		EFB2_01754	0.48	-2.8
1,856,533	+		EFB2_01754	0.50	-1.7
1,856,533	+		EFB2_01754	0.50	-1.7
1,856,536	+		EFB2_01754	0.51	-2.5
1,856,650	+		EFB2_01754	0.65	+2.9
1,856,650	+		EFB2_01754	0.65	+0.5
1,856,651	-		EFB2_01754	0.65	+1.2
1,856,699	+		EFB2_01754	0.71	+0.5
1,856,723	+		EFB2_01754	0.74	-0.4
1,856,723	+		EFB2_01754	0.74	-0.8
1,856,724	-		EFB2_01754	0.74	+2.4
1,856,724	-		EFB2_01754	0.74	-2.1
1,856,724	-		EFB2_01754	0.74	+1.6
1,856,724	-		EFB2_01754	0.74	-1.3
1,856,738	+		EFB2_01754	0.76	+0.3
1,856,738	+		EFB2_01754	0.76	-1.6
1,856,739	-		EFB2_01754	0.76	-0.5
1,856,739	-		EFB2_01754	0.76	-0.1
1,856,739	-		EFB2_01754	0.76	+0.9
1,856,739	-		EFB2_01754	0.76	+2.1
1,856,768	+		EFB2_01754	0.80	+0.6
1,856,768	+		EFB2_01754	0.80	+1.6
1,856,768	+		EFB2_01754	0.80	-0.3
1,856,768	+		EFB2_01754	0.80	-2.1
1,856,768	+		EFB2_01754	0.80	-0.8
1,856,768	+		EFB2_01754	0.80	+0.9
1,856,768	+		EFB2_01754	0.80	+1.5
1,856,768	+		EFB2_01754	0.80	+2.5
1,856,768	+		EFB2_01754	0.80	-0.5
1,856,769	-		EFB2_01754	0.80	+1.1
1,856,769	-		EFB2_01754	0.80	+0.7
1,856,769	-		EFB2_01754	0.80	+0.9
1,856,769	-		EFB2_01754	0.80	-0.1
1,856,769	-		EFB2_01754	0.80	+0.0
1,856,769	-		EFB2_01754	0.80	-1.0
1,856,794	+		EFB2_01754	0.83	-0.4
1,856,794	+		EFB2_01754	0.83	-0.4
1,856,795	-		EFB2_01754	0.83	+2.2
1,856,808	-		EFB2_01754	0.85	+1.6
1,856,827	+		EFB2_01754	0.87	-3.6
1,856,827	+		EFB2_01754	0.87	+1.7
1,856,827	+		EFB2_01754	0.87	-2.2
1,856,827	+		EFB2_01754	0.87	+0.6
1,856,860	+				+0.5
1,856,860	+				-2.6
1,856,861	-				+1.9
1,856,895	-				+2.1
1,856,937	+				+2.2
1,856,937	+				+2.8
1,856,937	+				-2.3
1,856,937	+				-1.8
1,856,937	+				-1.0
1,856,937	+				-2.5
1,856,937	+				-1.4
1,856,937	+				-3.1
1,856,937	+				+2.0
1,856,937	+				+1.9
1,856,937	+				-0.5
1,856,937	+				+2.3
1,856,938	-				-1.2
1,856,938	-				+1.4
1,856,938	-				-0.0
1,856,938	-				-1.4
1,856,938	-				+0.3
1,856,938	-				-2.3
1,856,938	-				-1.8
1,856,938	-				+1.1
1,856,938	-				-0.7
1,856,938	-				+0.9
1,856,938	-				+1.2
1,856,938	-				+2.2
1,856,938	-				-0.4
1,856,940	+				+0.2
1,856,940	+				-1.2
1,856,940	+				-1.3
1,856,940	+				+0.5
1,856,940	+				-3.2
1,856,940	+				-1.6
1,856,940	+				-0.3
1,856,940	+				+3.5
1,856,940	+				-1.7
1,856,940	+				-1.1
1,856,940	+				+0.7
1,856,941	-				+0.2
1,856,941	-				-0.5
1,856,941	-				+0.2
1,856,941	-				+0.8
1,856,941	-				-0.7
1,856,941	-				+0.6
1,856,941	-				+0.4
1,856,941	-				+3.1
1,856,942	+				+0.9
1,856,942	+				-0.0
1,856,942	+				-1.9
1,856,942	+				-2.4
1,856,942	+				+1.1
1,856,942	+				-2.2
1,856,942	+				-0.8
1,856,942	+				+1.7
1,856,942	+				-0.1
1,856,942	+				+0.4
1,856,942	+				-0.7
1,856,942	+				-0.0
1,856,942	+				-0.4
1,856,942	+				+1.8
1,856,942	+				-2.1
1,856,942	+				-0.5
1,856,943	-				+2.0
1,856,943	-				-0.7
1,856,943	-				+2.1
1,856,943	-				-1.4
1,856,943	-				-3.1
1,857,035	+				+0.7
1,857,035	+				-1.6
1,857,035	+				-1.5
1,857,035	+				+0.6
1,857,036	-				-0.2
1,857,036	-				-0.2
1,857,036	-				-0.7
1,857,036	-				-1.3
1,857,038	+				+2.7
1,857,039	-				-4.2
1,857,039	-				+1.2
1,857,054	-				+1.0
1,857,100	+		EFB2_01755	0.13	-2.2
1,857,120	+		EFB2_01755	0.15	-1.6
1,857,127	+		EFB2_01755	0.16	+1.4
1,857,127	+		EFB2_01755	0.16	+0.5
1,857,127	+		EFB2_01755	0.16	-1.5
1,857,127	+		EFB2_01755	0.16	-1.8
1,857,127	+		EFB2_01755	0.16	-1.1
1,857,127	+		EFB2_01755	0.16	-0.3
1,857,127	+		EFB2_01755	0.16	+1.9
1,857,127	+		EFB2_01755	0.16	-0.1
1,857,127	+		EFB2_01755	0.16	-0.3
1,857,127	+		EFB2_01755	0.16	-0.0
1,857,128	-		EFB2_01755	0.16	+0.0
1,857,128	-		EFB2_01755	0.16	+0.5
1,857,128	-		EFB2_01755	0.16	+0.3
1,857,128	-		EFB2_01755	0.16	-2.1
1,857,128	-		EFB2_01755	0.16	-2.0
1,857,128	-		EFB2_01755	0.16	-2.4
1,857,128	-		EFB2_01755	0.16	-1.4
1,857,139	+		EFB2_01755	0.18	-0.6
1,857,139	+		EFB2_01755	0.18	-0.3
1,857,139	+		EFB2_01755	0.18	+1.7
1,857,139	+		EFB2_01755	0.18	-0.2
1,857,139	+		EFB2_01755	0.18	+0.2
1,857,140	-		EFB2_01755	0.18	-1.0
1,857,140	-		EFB2_01755	0.18	-1.2
1,857,140	-		EFB2_01755	0.18	-0.0
1,857,140	-		EFB2_01755	0.18	+0.8
1,857,140	-		EFB2_01755	0.18	+1.2
1,857,140	-		EFB2_01755	0.18	+0.8
1,857,156	+		EFB2_01755	0.20	+0.8
1,857,157	-		EFB2_01755	0.20	-0.1
1,857,187	+		EFB2_01755	0.24	-0.3
1,857,187	+		EFB2_01755	0.24	+0.9
1,857,187	+		EFB2_01755	0.24	+0.0
1,857,187	+		EFB2_01755	0.24	+0.5
1,857,187	+		EFB2_01755	0.24	+0.8
1,857,187	+		EFB2_01755	0.24	+0.2
1,857,187	+		EFB2_01755	0.24	-0.1
1,857,188	-		EFB2_01755	0.24	-0.3
1,857,188	-		EFB2_01755	0.24	-0.6
1,857,188	-		EFB2_01755	0.24	+0.0
1,857,188	-		EFB2_01755	0.24	+0.2
1,857,203	+		EFB2_01755	0.26	-0.4
1,857,203	+		EFB2_01755	0.26	+0.5
1,857,203	+		EFB2_01755	0.26	+0.4
1,857,203	+		EFB2_01755	0.26	-2.9
1,857,203	+		EFB2_01755	0.26	-0.9
1,857,203	+		EFB2_01755	0.26	-0.2
1,857,203	+		EFB2_01755	0.26	-2.1
1,857,203	+		EFB2_01755	0.26	-0.3
1,857,203	+		EFB2_01755	0.26	+1.0
1,857,203	+		EFB2_01755	0.26	-2.2
1,857,203	+		EFB2_01755	0.26	-1.2
1,857,204	-		EFB2_01755	0.26	-1.6
1,857,204	-		EFB2_01755	0.26	+2.7
1,857,204	-		EFB2_01755	0.26	-1.7
1,857,204	-		EFB2_01755	0.26	+2.5
1,857,204	-		EFB2_01755	0.26	-0.8
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1,857,292	-		EFB2_01755	0.37	-2.2
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1,857,337	-		EFB2_01755	0.42	-1.3
1,857,337	-		EFB2_01755	0.42	-2.5
1,857,347	+		EFB2_01755	0.43	+0.1
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1,857,347	+		EFB2_01755	0.43	+3.7
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1,857,380	-		EFB2_01755	0.48	+2.5
1,857,385	+		EFB2_01755	0.48	+0.7
1,857,425	+		EFB2_01755	0.53	+2.7
1,857,425	+		EFB2_01755	0.53	-1.2
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1,857,512	+		EFB2_01755	0.64	-1.1
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1,857,513	-		EFB2_01755	0.64	+0.9
1,857,524	+		EFB2_01755	0.65	-1.1
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1,857,573	+		EFB2_01755	0.71	-1.7
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1,857,596	-		EFB2_01755	0.74	+0.9
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1,857,617	-		EFB2_01755	0.77	-1.8
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1,857,729	+				-1.8
1,857,730	-				-1.4
1,857,747	+				+1.4
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1,857,757	-				+1.8
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1,857,828	+				-0.7
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