Strain Fitness in Escherichia fergusonii Becca around EFB2_01697

Experiment: phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2)
1,787,521	+		EFB2_01696	0.11	-1.3
1,787,522	-		EFB2_01696	0.11	-1.1
1,787,522	-		EFB2_01696	0.11	+0.2
1,787,537	+		EFB2_01696	0.13	+1.6
1,787,537	+		EFB2_01696	0.13	-1.0
1,787,537	+		EFB2_01696	0.13	-0.1
1,787,537	+		EFB2_01696	0.13	+0.1
1,787,537	+		EFB2_01696	0.13	+2.6
1,787,537	+		EFB2_01696	0.13	+1.0
1,787,537	+		EFB2_01696	0.13	+0.2
1,787,537	+		EFB2_01696	0.13	+1.5
1,787,537	+		EFB2_01696	0.13	-0.1
1,787,537	+		EFB2_01696	0.13	+0.5
1,787,537	+		EFB2_01696	0.13	-2.9
1,787,537	+		EFB2_01696	0.13	-0.9
1,787,537	+		EFB2_01696	0.13	+2.2
1,787,537	+		EFB2_01696	0.13	-1.9
1,787,538	-		EFB2_01696	0.13	-1.0
1,787,538	-		EFB2_01696	0.13	+0.2
1,787,538	-		EFB2_01696	0.13	+1.5
1,787,538	-		EFB2_01696	0.13	+3.5
1,787,538	-		EFB2_01696	0.13	-0.6
1,787,538	-		EFB2_01696	0.13	-0.9
1,787,538	-		EFB2_01696	0.13	+0.6
1,787,538	-		EFB2_01696	0.13	-0.3
1,787,538	-		EFB2_01696	0.13	-1.5
1,787,538	-		EFB2_01696	0.13	+0.2
1,787,538	-		EFB2_01696	0.13	+0.9
1,787,538	-		EFB2_01696	0.13	+0.9
1,787,538	-		EFB2_01696	0.13	-0.3
1,787,538	-		EFB2_01696	0.13	-1.0
1,787,538	-		EFB2_01696	0.13	+1.2
1,787,538	-		EFB2_01696	0.13	-0.5
1,787,538	-		EFB2_01696	0.13	-0.4
1,787,538	-		EFB2_01696	0.13	+2.0
1,787,538	-		EFB2_01696	0.13	-1.2
1,787,539	+		EFB2_01696	0.13	-1.0
1,787,539	+		EFB2_01696	0.13	-2.3
1,787,539	+		EFB2_01696	0.13	-1.7
1,787,539	+		EFB2_01696	0.13	+2.5
1,787,539	+		EFB2_01696	0.13	-0.0
1,787,539	+		EFB2_01696	0.13	-1.6
1,787,539	+		EFB2_01696	0.13	-2.9
1,787,539	+		EFB2_01696	0.13	-0.8
1,787,539	+		EFB2_01696	0.13	+1.3
1,787,539	+		EFB2_01696	0.13	-1.0
1,787,539	+		EFB2_01696	0.13	+1.6
1,787,539	+		EFB2_01696	0.13	-3.0
1,787,540	-		EFB2_01696	0.13	-0.9
1,787,540	-		EFB2_01696	0.13	+0.4
1,787,540	-		EFB2_01696	0.13	+2.8
1,787,540	-		EFB2_01696	0.13	-1.4
1,787,540	-		EFB2_01696	0.13	-1.3
1,787,541	+		EFB2_01696	0.13	-1.1
1,787,541	+		EFB2_01696	0.13	+3.7
1,787,541	+		EFB2_01696	0.13	+0.3
1,787,541	+		EFB2_01696	0.13	+0.3
1,787,541	+		EFB2_01696	0.13	-2.9
1,787,541	+		EFB2_01696	0.13	-1.2
1,787,541	+		EFB2_01696	0.13	-0.1
1,787,541	+		EFB2_01696	0.13	-0.9
1,787,541	+		EFB2_01696	0.13	-1.1
1,787,541	+		EFB2_01696	0.13	+0.5
1,787,541	+		EFB2_01696	0.13	-1.0
1,787,541	+		EFB2_01696	0.13	-3.2
1,787,541	+		EFB2_01696	0.13	-1.8
1,787,541	+		EFB2_01696	0.13	+0.7
1,787,541	+		EFB2_01696	0.13	+1.7
1,787,541	+		EFB2_01696	0.13	+0.1
1,787,542	-		EFB2_01696	0.13	-2.9
1,787,542	-		EFB2_01696	0.13	-1.1
1,787,542	-		EFB2_01696	0.13	+0.4
1,787,542	-		EFB2_01696	0.13	+1.2
1,787,542	-		EFB2_01696	0.13	-0.3
1,787,542	-		EFB2_01696	0.13	+3.2
1,787,542	-		EFB2_01696	0.13	-1.3
1,787,542	-		EFB2_01696	0.13	-2.5
1,787,542	-		EFB2_01696	0.13	+0.3
1,787,542	-		EFB2_01696	0.13	-2.8
1,787,542	-		EFB2_01696	0.13	-0.3
1,787,542	-		EFB2_01696	0.13	+2.2
1,787,542	-		EFB2_01696	0.13	-0.3
1,787,542	-		EFB2_01696	0.13	+1.7
1,787,542	-		EFB2_01696	0.13	+1.1
1,787,542	-		EFB2_01696	0.13	+1.4
1,787,542	-		EFB2_01696	0.13	-1.5
1,787,555	+		EFB2_01696	0.14	-1.5
1,787,556	-		EFB2_01696	0.14	+0.9
1,787,583	+		EFB2_01696	0.17	+4.5
1,787,583	+		EFB2_01696	0.17	+2.2
1,787,583	+		EFB2_01696	0.17	-0.7
1,787,584	-		EFB2_01696	0.17	-1.8
1,787,584	-		EFB2_01696	0.17	+0.2
1,787,591	+		EFB2_01696	0.18	+1.3
1,787,591	+		EFB2_01696	0.18	+2.2
1,787,591	+		EFB2_01696	0.18	-0.0
1,787,591	+		EFB2_01696	0.18	+0.6
1,787,591	+		EFB2_01696	0.18	+1.6
1,787,591	+		EFB2_01696	0.18	+0.2
1,787,592	-		EFB2_01696	0.18	-0.7
1,787,592	-		EFB2_01696	0.18	+1.8
1,787,592	-		EFB2_01696	0.18	-1.6
1,787,643	+		EFB2_01696	0.22	+0.9
1,787,643	+		EFB2_01696	0.22	+0.7
1,787,644	-		EFB2_01696	0.22	+1.1
1,787,678	+		EFB2_01696	0.26	+0.6
1,787,797	+		EFB2_01696	0.36	-2.1
1,787,798	-		EFB2_01696	0.37	-0.3
1,787,808	+		EFB2_01696	0.37	+2.3
1,787,871	-		EFB2_01696	0.43	-0.5
1,787,871	-		EFB2_01696	0.43	-0.1
1,787,871	-		EFB2_01696	0.43	-1.2
1,787,871	-		EFB2_01696	0.43	+1.5
1,787,871	-		EFB2_01696	0.43	-1.9
1,787,903	+		EFB2_01696	0.46	-2.3
1,787,903	+		EFB2_01696	0.46	-1.9
1,787,903	+		EFB2_01696	0.46	-0.6
1,787,904	-		EFB2_01696	0.46	-2.0
1,787,904	-		EFB2_01696	0.46	+1.0
1,787,904	-		EFB2_01696	0.46	-1.5
1,787,951	+		EFB2_01696	0.51	-0.9
1,787,951	+		EFB2_01696	0.51	+2.1
1,787,951	+		EFB2_01696	0.51	-1.4
1,787,951	+		EFB2_01696	0.51	-2.7
1,787,951	+		EFB2_01696	0.51	-1.7
1,787,951	+		EFB2_01696	0.51	-2.1
1,787,951	+		EFB2_01696	0.51	-0.1
1,787,951	+		EFB2_01696	0.51	-0.1
1,787,951	+		EFB2_01696	0.51	+0.1
1,787,952	-		EFB2_01696	0.51	-0.1
1,787,952	-		EFB2_01696	0.51	+1.5
1,787,952	-		EFB2_01696	0.51	-0.0
1,787,952	-		EFB2_01696	0.51	-0.7
1,787,970	+		EFB2_01696	0.52	+0.9
1,787,984	+		EFB2_01696	0.54	-2.7
1,787,984	+		EFB2_01696	0.54	-2.2
1,787,984	+		EFB2_01696	0.54	-0.1
1,787,984	+		EFB2_01696	0.54	+0.4
1,787,984	+		EFB2_01696	0.54	-0.5
1,787,984	+		EFB2_01696	0.54	+2.2
1,787,984	+		EFB2_01696	0.54	-1.0
1,787,984	+		EFB2_01696	0.54	-1.6
1,787,984	+		EFB2_01696	0.54	+0.1
1,787,984	+		EFB2_01696	0.54	-0.5
1,787,984	+		EFB2_01696	0.54	-0.5
1,787,984	+		EFB2_01696	0.54	-1.2
1,787,985	-		EFB2_01696	0.54	-1.1
1,787,985	-		EFB2_01696	0.54	-0.2
1,787,985	-		EFB2_01696	0.54	-1.5
1,787,985	-		EFB2_01696	0.54	-1.5
1,787,985	-		EFB2_01696	0.54	+2.3
1,787,985	-		EFB2_01696	0.54	-0.6
1,787,985	-		EFB2_01696	0.54	+1.1
1,787,985	-		EFB2_01696	0.54	+0.2
1,787,985	-		EFB2_01696	0.54	+0.0
1,788,008	+		EFB2_01696	0.56	+1.7
1,788,008	+		EFB2_01696	0.56	+4.8
1,788,023	+		EFB2_01696	0.57	+0.5
1,788,023	+		EFB2_01696	0.57	+1.5
1,788,023	+		EFB2_01696	0.57	-1.5
1,788,024	-		EFB2_01696	0.57	-1.3
1,788,024	-		EFB2_01696	0.57	+2.0
1,788,024	-		EFB2_01696	0.57	+0.5
1,788,024	-		EFB2_01696	0.57	-2.3
1,788,024	-		EFB2_01696	0.57	+0.4
1,788,026	+		EFB2_01696	0.57	-2.2
1,788,027	-		EFB2_01696	0.58	+2.1
1,788,027	-		EFB2_01696	0.58	+0.9
1,788,027	-		EFB2_01696	0.58	-1.1
1,788,040	+		EFB2_01696	0.59	+1.9
1,788,040	+		EFB2_01696	0.59	+1.0
1,788,040	+		EFB2_01696	0.59	+1.6
1,788,040	+		EFB2_01696	0.59	-0.7
1,788,041	-		EFB2_01696	0.59	+0.1
1,788,041	-		EFB2_01696	0.59	+0.9
1,788,041	-		EFB2_01696	0.59	-1.3
1,788,041	-		EFB2_01696	0.59	+1.3
1,788,041	-		EFB2_01696	0.59	+0.9
1,788,041	-		EFB2_01696	0.59	+2.5
1,788,115	-		EFB2_01696	0.66	-1.8
1,788,128	-		EFB2_01696	0.67	+0.6
1,788,144	-		EFB2_01696	0.68	-0.3
1,788,144	-		EFB2_01696	0.68	-1.1
1,788,153	+		EFB2_01696	0.69	+0.0
1,788,154	-		EFB2_01696	0.69	+1.3
1,788,154	-		EFB2_01696	0.69	-1.3
1,788,185	+		EFB2_01696	0.72	-2.9
1,788,185	+		EFB2_01696	0.72	+0.9
1,788,185	+		EFB2_01696	0.72	-2.0
1,788,185	+		EFB2_01696	0.72	-2.2
1,788,186	-		EFB2_01696	0.72	-0.9
1,788,186	-		EFB2_01696	0.72	-0.0
1,788,194	+		EFB2_01696	0.73	+0.9
1,788,194	+		EFB2_01696	0.73	+2.2
1,788,194	+		EFB2_01696	0.73	+2.5
1,788,197	+		EFB2_01696	0.73	-0.8
1,788,197	+		EFB2_01696	0.73	-1.5
1,788,197	+		EFB2_01696	0.73	+0.9
1,788,197	+		EFB2_01696	0.73	+0.1
1,788,197	+		EFB2_01696	0.73	+2.5
1,788,197	+		EFB2_01696	0.73	+0.6
1,788,197	+		EFB2_01696	0.73	-0.1
1,788,198	-		EFB2_01696	0.73	+0.7
1,788,198	-		EFB2_01696	0.73	-1.8
1,788,198	-		EFB2_01696	0.73	+0.7
1,788,198	-		EFB2_01696	0.73	-2.4
1,788,198	-		EFB2_01696	0.73	+0.1
1,788,198	-		EFB2_01696	0.73	+2.3
1,788,198	-		EFB2_01696	0.73	+0.8
1,788,198	-		EFB2_01696	0.73	+1.4
1,788,198	-		EFB2_01696	0.73	+1.5
1,788,198	-		EFB2_01696	0.73	+1.2
1,788,198	-		EFB2_01696	0.73	-0.2
1,788,198	-		EFB2_01696	0.73	-2.4
1,788,281	+		EFB2_01696	0.81	-2.1
1,788,313	+		EFB2_01696	0.84	+1.4
1,788,313	+		EFB2_01696	0.84	-0.6
1,788,313	+		EFB2_01696	0.84	+1.5
1,788,314	-		EFB2_01696	0.84	-1.3
1,788,314	-		EFB2_01696	0.84	-1.1
1,788,314	-		EFB2_01696	0.84	+1.7
1,788,314	-		EFB2_01696	0.84	-0.2
1,788,314	-		EFB2_01696	0.84	+1.7
1,788,314	-		EFB2_01696	0.84	+0.6
1,788,314	-		EFB2_01696	0.84	-2.8
1,788,331	+		EFB2_01696	0.85	-0.5
1,788,332	+		EFB2_01696	0.86	-0.4
1,788,332	+		EFB2_01696	0.86	-2.6
1,788,332	+		EFB2_01696	0.86	+1.9
1,788,332	+		EFB2_01696	0.86	+0.1
1,788,332	+		EFB2_01696	0.86	+2.3
1,788,332	+		EFB2_01696	0.86	+1.9
1,788,332	+		EFB2_01696	0.86	+2.2
1,788,332	+		EFB2_01696	0.86	-0.3
1,788,332	+		EFB2_01696	0.86	-1.8
1,788,332	+		EFB2_01696	0.86	-1.5
1,788,332	+		EFB2_01696	0.86	-1.9
1,788,333	-		EFB2_01696	0.86	-2.2
1,788,333	-		EFB2_01696	0.86	-0.1
1,788,333	-		EFB2_01696	0.86	-0.5
1,788,333	-		EFB2_01696	0.86	+0.6
1,788,333	-		EFB2_01696	0.86	+1.9
1,788,333	-		EFB2_01696	0.86	-1.0
1,788,333	-		EFB2_01696	0.86	-3.0
1,788,333	-		EFB2_01696	0.86	-0.2
1,788,333	-		EFB2_01696	0.86	-0.4
1,788,333	-		EFB2_01696	0.86	-2.3
1,788,333	-		EFB2_01696	0.86	-0.1
1,788,333	-		EFB2_01696	0.86	-0.2
1,788,333	-		EFB2_01696	0.86	-0.0
1,788,333	-		EFB2_01696	0.86	+0.6
1,788,333	-		EFB2_01696	0.86	+1.1
1,788,333	-		EFB2_01696	0.86	-0.1
1,788,334	+		EFB2_01696	0.86	+0.9
1,788,334	+		EFB2_01696	0.86	+1.8
1,788,334	+		EFB2_01696	0.86	-1.0
1,788,334	+		EFB2_01696	0.86	-1.1
1,788,334	+		EFB2_01696	0.86	+0.6
1,788,334	+		EFB2_01696	0.86	-2.4
1,788,334	+		EFB2_01696	0.86	-0.5
1,788,334	+		EFB2_01696	0.86	+0.9
1,788,334	+		EFB2_01696	0.86	+1.5
1,788,334	+		EFB2_01696	0.86	+0.1
1,788,335	-		EFB2_01696	0.86	-0.7
1,788,335	-		EFB2_01696	0.86	+1.7
1,788,335	-		EFB2_01696	0.86	-1.0
1,788,335	-		EFB2_01696	0.86	+0.2
1,788,335	-		EFB2_01696	0.86	-2.7
1,788,335	-		EFB2_01696	0.86	-0.9
1,788,335	-		EFB2_01696	0.86	-1.3
1,788,335	-		EFB2_01696	0.86	+0.8
1,788,335	-		EFB2_01696	0.86	-1.1
1,788,335	-		EFB2_01696	0.86	+0.3
1,788,335	-		EFB2_01696	0.86	+2.7
1,788,335	-		EFB2_01696	0.86	-0.3
1,788,335	-		EFB2_01696	0.86	-0.5
1,788,335	-		EFB2_01696	0.86	-0.8
1,788,335	-		EFB2_01696	0.86	+0.9
1,788,335	-		EFB2_01696	0.86	+2.1
1,788,347	+		EFB2_01696	0.87	+1.5
1,788,347	+		EFB2_01696	0.87	-0.3
1,788,375	-		EFB2_01696	0.90	-2.5
1,788,377	+		EFB2_01696	0.90	+0.6
1,788,377	+		EFB2_01696	0.90	-0.9
1,788,377	+		EFB2_01696	0.90	-0.5
1,788,377	+		EFB2_01696	0.90	-0.1
1,788,377	+		EFB2_01696	0.90	-1.3
1,788,377	+		EFB2_01696	0.90	-0.9
1,788,377	+		EFB2_01696	0.90	-2.0
1,788,377	+		EFB2_01696	0.90	-1.0
1,788,377	+		EFB2_01696	0.90	-0.7
1,788,378	-		EFB2_01696	0.90	-1.6
1,788,378	-		EFB2_01696	0.90	-1.1
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