Strain Fitness in Escherichia fergusonii Becca around EFB2_01632

Experiment: phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2)
1,718,130	-		EFB2_01631	0.20	-0.0
1,718,130	-		EFB2_01631	0.20	+1.4
1,718,176	-		EFB2_01631	0.24	-1.4
1,718,176	-		EFB2_01631	0.24	-1.5
1,718,196	+		EFB2_01631	0.26	-1.9
1,718,242	+		EFB2_01631	0.29	+1.9
1,718,243	-		EFB2_01631	0.30	+0.5
1,718,249	+		EFB2_01631	0.30	-0.1
1,718,250	-		EFB2_01631	0.30	-2.5
1,718,268	-		EFB2_01631	0.32	-2.9
1,718,300	+		EFB2_01631	0.34	-1.1
1,718,327	+		EFB2_01631	0.37	-2.1
1,718,405	+		EFB2_01631	0.43	+0.6
1,718,405	+		EFB2_01631	0.43	-0.9
1,718,406	-		EFB2_01631	0.43	-1.0
1,718,406	-		EFB2_01631	0.43	+0.6
1,718,406	-		EFB2_01631	0.43	-1.5
1,718,469	+		EFB2_01631	0.49	+2.0
1,718,470	-		EFB2_01631	0.49	+1.6
1,718,489	+		EFB2_01631	0.50	+0.8
1,718,489	+		EFB2_01631	0.50	-3.4
1,718,490	-		EFB2_01631	0.50	-3.1
1,718,535	+		EFB2_01631	0.54	-1.8
1,718,535	+		EFB2_01631	0.54	-0.6
1,718,536	-		EFB2_01631	0.54	+0.2
1,718,536	-		EFB2_01631	0.54	+1.1
1,718,536	-		EFB2_01631	0.54	-1.6
1,718,565	-		EFB2_01631	0.57	+1.6
1,718,565	-		EFB2_01631	0.57	+0.1
1,718,580	-		EFB2_01631	0.58	-0.1
1,718,606	+		EFB2_01631	0.60	-0.6
1,718,606	+		EFB2_01631	0.60	-1.2
1,718,606	+		EFB2_01631	0.60	+0.9
1,718,607	-		EFB2_01631	0.60	+1.1
1,718,607	-		EFB2_01631	0.60	-0.2
1,718,612	-		EFB2_01631	0.61	-3.7
1,718,649	+		EFB2_01631	0.64	+2.3
1,718,649	+		EFB2_01631	0.64	-1.0
1,718,649	+		EFB2_01631	0.64	+0.9
1,718,649	+		EFB2_01631	0.64	-1.6
1,718,650	-		EFB2_01631	0.64	-0.5
1,718,650	-		EFB2_01631	0.64	+1.7
1,718,650	-		EFB2_01631	0.64	+1.0
1,718,650	-		EFB2_01631	0.64	+1.4
1,718,650	-		EFB2_01631	0.64	-1.6
1,718,657	-		EFB2_01631	0.64	-0.6
1,718,706	+		EFB2_01631	0.69	-1.0
1,718,706	+		EFB2_01631	0.69	-2.3
1,718,706	+		EFB2_01631	0.69	-1.1
1,718,707	-		EFB2_01631	0.69	-3.2
1,718,707	-		EFB2_01631	0.69	-0.0
1,718,707	-		EFB2_01631	0.69	-0.9
1,718,707	-		EFB2_01631	0.69	-1.0
1,718,707	-		EFB2_01631	0.69	+0.4
1,718,707	-		EFB2_01631	0.69	-2.9
1,718,710	+		EFB2_01631	0.69	-2.8
1,718,710	+		EFB2_01631	0.69	+1.9
1,718,710	+		EFB2_01631	0.69	-0.2
1,718,710	+		EFB2_01631	0.69	+1.6
1,718,711	-		EFB2_01631	0.69	+0.6
1,718,726	+		EFB2_01631	0.70	-1.4
1,718,726	+		EFB2_01631	0.70	+2.6
1,718,727	-		EFB2_01631	0.70	-1.1
1,718,727	-		EFB2_01631	0.70	-2.3
1,718,801	+		EFB2_01631	0.77	-0.1
1,718,801	+		EFB2_01631	0.77	+0.4
1,718,802	-		EFB2_01631	0.77	-1.5
1,718,802	-		EFB2_01631	0.77	-1.4
1,718,802	-		EFB2_01631	0.77	+1.8
1,718,823	-		EFB2_01631	0.78	-1.5
1,718,823	-		EFB2_01631	0.78	+1.5
1,718,823	-		EFB2_01631	0.78	-2.3
1,718,823	-		EFB2_01631	0.78	-0.9
1,718,823	-		EFB2_01631	0.78	-1.8
1,718,865	+		EFB2_01631	0.82	-0.4
1,718,865	+		EFB2_01631	0.82	-0.3
1,718,866	-		EFB2_01631	0.82	+0.4
1,718,866	-		EFB2_01631	0.82	-0.5
1,718,907	+		EFB2_01631	0.86	-2.0
1,718,907	+		EFB2_01631	0.86	-2.3
1,718,907	+		EFB2_01631	0.86	-1.0
1,718,907	+		EFB2_01631	0.86	+2.1
1,718,907	+		EFB2_01631	0.86	-0.0
1,718,907	+		EFB2_01631	0.86	-0.4
1,718,908	-		EFB2_01631	0.86	+0.4
1,718,908	-		EFB2_01631	0.86	-0.4
1,718,908	-		EFB2_01631	0.86	-0.1
1,718,908	-		EFB2_01631	0.86	+1.1
1,718,908	-		EFB2_01631	0.86	-0.9
1,718,908	-		EFB2_01631	0.86	+2.1
1,718,921	+		EFB2_01631	0.87	+1.6
1,718,921	+		EFB2_01631	0.87	-2.0
1,718,940	+		EFB2_01631	0.88	-1.1
1,718,940	+		EFB2_01631	0.88	-1.0
1,718,940	+		EFB2_01631	0.88	+3.4
1,718,941	-		EFB2_01631	0.88	-0.1
1,718,941	-		EFB2_01631	0.88	-0.7
1,718,941	-		EFB2_01631	0.88	+2.3
1,718,975	+				-2.5
1,718,975	+				-0.6
1,718,975	+				-0.8
1,718,975	+				-0.7
1,718,975	+				+0.1
1,718,975	+				+1.1
1,718,975	+				-1.6
1,718,976	-				+0.8
1,718,976	-				-0.2
1,718,976	-				-2.1
1,718,976	-				-0.5
1,718,979	+				-1.8
1,718,980	-				+0.4
1,718,980	-				-3.3
1,718,980	-				+0.2
1,718,980	-				-4.2
1,719,032	+				+2.4
1,719,032	+				-0.1
1,719,033	-				-0.6
1,719,033	-				-2.0
1,719,033	-				-0.2
1,719,039	-				+1.0
1,719,039	-				-0.6
1,719,044	+				+1.0
1,719,044	+				+0.2
1,719,044	+				+1.1
1,719,044	+				+1.6
1,719,044	+				+0.5
1,719,044	+				-0.2
1,719,044	+				+1.4
1,719,044	+				-0.7
1,719,044	+				+1.3
1,719,044	+				-0.2
1,719,044	+				-0.4
1,719,044	+				-2.0
1,719,044	+				+2.1
1,719,044	+				-0.4
1,719,044	+				-1.0
1,719,044	+				-0.1
1,719,045	-				-0.8
1,719,045	-				+2.4
1,719,045	-				+1.4
1,719,045	-				+1.0
1,719,045	-				-0.4
1,719,045	-				+0.8
1,719,045	-				-1.0
1,719,045	-				+2.4
1,719,045	-				+1.1
1,719,045	-				-0.4
1,719,045	-				+0.4
1,719,045	-				+0.1
1,719,045	-				+0.6
1,719,045	-				+0.3
1,719,045	-				+1.6
1,719,045	-				-0.9
1,719,045	-				-0.7
1,719,045	-				-0.9
1,719,045	-				+1.0
1,719,045	-				-0.1
1,719,048	+				+0.2
1,719,048	+				+1.3
1,719,048	+				-0.3
1,719,049	-				-1.6
1,719,080	+				-0.4
1,719,080	+				-0.2
1,719,080	+				-1.5
1,719,081	-				+0.9
1,719,081	-				-2.5
1,719,081	-				+0.1
1,719,081	-				+0.4
1,719,081	-				+0.5
1,719,081	-				+1.4
1,719,081	-				+1.9
1,719,081	-				-1.5
1,719,081	-				+0.6
1,719,097	+				+0.6
1,719,098	-				-0.7
1,719,098	-				+0.3
1,719,169	+				+3.3
1,719,169	+				-0.9
1,719,169	+				-2.5
1,719,170	-				+1.8
1,719,170	-				+0.6
1,719,247	+		EFB2_01632	0.11	+0.7
1,719,281	+		EFB2_01632	0.13	-0.9
1,719,371	+		EFB2_01632	0.20	+0.3
1,719,386	+		EFB2_01632	0.21	+0.4
1,719,387	-		EFB2_01632	0.21	-3.2
1,719,387	-		EFB2_01632	0.21	-1.5
1,719,493	+		EFB2_01632	0.29	-2.3
1,719,494	-		EFB2_01632	0.29	-0.9
1,719,494	-		EFB2_01632	0.29	+1.1
1,719,494	-		EFB2_01632	0.29	-0.6
1,719,494	-		EFB2_01632	0.29	-1.1
1,719,494	-		EFB2_01632	0.29	+0.7
1,719,494	-		EFB2_01632	0.29	+1.4
1,719,516	-		EFB2_01632	0.31	+0.2
1,719,516	-		EFB2_01632	0.31	-2.3
1,719,524	+		EFB2_01632	0.31	+1.4
1,719,524	+		EFB2_01632	0.31	+1.4
1,719,525	-		EFB2_01632	0.32	-0.2
1,719,545	+		EFB2_01632	0.33	+0.7
1,719,546	-		EFB2_01632	0.33	+1.1
1,719,546	-		EFB2_01632	0.33	-0.2
1,719,554	+		EFB2_01632	0.34	-0.6
1,719,554	+		EFB2_01632	0.34	-2.1
1,719,554	+		EFB2_01632	0.34	-0.6
1,719,554	+		EFB2_01632	0.34	+1.0
1,719,554	+		EFB2_01632	0.34	-2.0
1,719,554	+		EFB2_01632	0.34	-0.7
1,719,554	+		EFB2_01632	0.34	+1.6
1,719,555	-		EFB2_01632	0.34	-2.3
1,719,555	-		EFB2_01632	0.34	+1.7
1,719,555	-		EFB2_01632	0.34	-1.6
1,719,555	-		EFB2_01632	0.34	-1.2
1,719,555	-		EFB2_01632	0.34	-1.8
1,719,555	-		EFB2_01632	0.34	-0.8
1,719,555	-		EFB2_01632	0.34	-0.1
1,719,555	-		EFB2_01632	0.34	-0.3
1,719,555	-		EFB2_01632	0.34	-0.2
1,719,555	-		EFB2_01632	0.34	+0.4
1,719,555	-		EFB2_01632	0.34	+1.4
1,719,555	-		EFB2_01632	0.34	+1.4
1,719,555	-		EFB2_01632	0.34	+0.5
1,719,556	+		EFB2_01632	0.34	+1.2
1,719,556	+		EFB2_01632	0.34	-0.5
1,719,556	+		EFB2_01632	0.34	+0.2
1,719,556	+		EFB2_01632	0.34	-0.7
1,719,556	+		EFB2_01632	0.34	+1.9
1,719,556	+		EFB2_01632	0.34	+0.4
1,719,556	+		EFB2_01632	0.34	-1.4
1,719,556	+		EFB2_01632	0.34	-1.8
1,719,556	+		EFB2_01632	0.34	+0.7
1,719,556	+		EFB2_01632	0.34	+0.4
1,719,556	+		EFB2_01632	0.34	+1.2
1,719,556	+		EFB2_01632	0.34	-0.3
1,719,556	+		EFB2_01632	0.34	+1.4
1,719,556	+		EFB2_01632	0.34	-0.2
1,719,556	+		EFB2_01632	0.34	-0.1
1,719,556	+		EFB2_01632	0.34	-2.6
1,719,556	+		EFB2_01632	0.34	+3.1
1,719,557	-		EFB2_01632	0.34	-2.0
1,719,557	-		EFB2_01632	0.34	+0.1
1,719,557	-		EFB2_01632	0.34	-0.1
1,719,557	-		EFB2_01632	0.34	+1.4
1,719,557	-		EFB2_01632	0.34	+0.3
1,719,557	-		EFB2_01632	0.34	-1.3
1,719,557	-		EFB2_01632	0.34	+0.4
1,719,557	-		EFB2_01632	0.34	+0.2
1,719,557	-		EFB2_01632	0.34	-2.0
1,719,557	-		EFB2_01632	0.34	-0.4
1,719,557	-		EFB2_01632	0.34	-0.1
1,719,557	-		EFB2_01632	0.34	-1.3
1,719,557	-		EFB2_01632	0.34	+0.4
1,719,557	-		EFB2_01632	0.34	-1.1
1,719,557	-		EFB2_01632	0.34	-3.0
1,719,572	+		EFB2_01632	0.35	+0.8
1,719,572	+		EFB2_01632	0.35	-0.8
1,719,572	+		EFB2_01632	0.35	-2.3
1,719,572	+		EFB2_01632	0.35	+0.8
1,719,572	+		EFB2_01632	0.35	+0.1
1,719,572	+		EFB2_01632	0.35	+0.8
1,719,572	+		EFB2_01632	0.35	-1.6
1,719,572	+		EFB2_01632	0.35	+1.4
1,719,572	+		EFB2_01632	0.35	-0.9
1,719,573	-		EFB2_01632	0.35	+1.2
1,719,573	-		EFB2_01632	0.35	+0.2
1,719,573	-		EFB2_01632	0.35	-1.3
1,719,573	-		EFB2_01632	0.35	+0.4
1,719,576	+		EFB2_01632	0.35	-2.2
1,719,576	+		EFB2_01632	0.35	-0.5
1,719,576	+		EFB2_01632	0.35	-0.1
1,719,576	+		EFB2_01632	0.35	+2.4
1,719,576	+		EFB2_01632	0.35	+0.0
1,719,576	+		EFB2_01632	0.35	-2.6
1,719,577	-		EFB2_01632	0.35	-3.0
1,719,577	-		EFB2_01632	0.35	-2.0
1,719,596	+		EFB2_01632	0.37	+0.7
1,719,596	+		EFB2_01632	0.37	+0.4
1,719,597	-		EFB2_01632	0.37	-0.3
1,719,649	+		EFB2_01632	0.41	+1.2
1,719,649	+		EFB2_01632	0.41	+1.9
1,719,649	+		EFB2_01632	0.41	-2.0
1,719,649	+		EFB2_01632	0.41	+0.8
1,719,650	-		EFB2_01632	0.41	+0.7
1,719,650	-		EFB2_01632	0.41	-2.1
1,719,650	-		EFB2_01632	0.41	-1.6
1,719,650	-		EFB2_01632	0.41	+0.9
1,719,650	-		EFB2_01632	0.41	+0.8
1,719,650	-		EFB2_01632	0.41	+1.9
1,719,661	+		EFB2_01632	0.42	-1.7
1,719,661	+		EFB2_01632	0.42	+1.3
1,719,662	-		EFB2_01632	0.42	-0.9
1,719,774	+		EFB2_01632	0.50	+0.3
1,719,775	-		EFB2_01632	0.50	+0.3
1,719,775	-		EFB2_01632	0.50	-0.9
1,719,775	-		EFB2_01632	0.50	+0.4
1,719,830	+		EFB2_01632	0.55	+0.7
1,719,830	+		EFB2_01632	0.55	-1.1
1,719,830	+		EFB2_01632	0.55	+1.1
1,719,830	+		EFB2_01632	0.55	-0.4
1,719,830	+		EFB2_01632	0.55	-1.7
1,719,830	+		EFB2_01632	0.55	+0.0
1,719,830	+		EFB2_01632	0.55	+1.1
1,719,831	-		EFB2_01632	0.55	+1.0
1,719,831	-		EFB2_01632	0.55	+0.1
1,719,831	-		EFB2_01632	0.55	-2.3
1,719,831	-		EFB2_01632	0.55	+0.4
1,719,831	-		EFB2_01632	0.55	-2.0
1,719,831	-		EFB2_01632	0.55	-0.6
1,719,831	-		EFB2_01632	0.55	-2.3
1,719,869	+		EFB2_01632	0.58	-2.6
1,719,870	-		EFB2_01632	0.58	-0.6
1,719,870	-		EFB2_01632	0.58	+0.7
1,719,870	-		EFB2_01632	0.58	+1.7
1,719,872	+		EFB2_01632	0.58	+0.9
1,719,872	+		EFB2_01632	0.58	-0.4
1,719,872	+		EFB2_01632	0.58	+1.7
1,719,917	+		EFB2_01632	0.61	-0.9
1,719,918	-		EFB2_01632	0.61	-1.0
1,720,000	+		EFB2_01632	0.67	-1.8
1,720,000	+		EFB2_01632	0.67	-1.5
1,720,000	+		EFB2_01632	0.67	+0.5
1,720,000	+		EFB2_01632	0.67	+1.0
1,720,001	-		EFB2_01632	0.67	-1.6
1,720,001	-		EFB2_01632	0.67	+0.4
1,720,001	-		EFB2_01632	0.67	-2.2
1,720,001	-		EFB2_01632	0.67	-0.9
1,720,001	-		EFB2_01632	0.67	-1.1
1,720,001	-		EFB2_01632	0.67	+2.7
1,720,001	-		EFB2_01632	0.67	-1.1
1,720,001	-		EFB2_01632	0.67	+1.3
1,720,001	-		EFB2_01632	0.67	+2.1
1,720,001	-		EFB2_01632	0.67	-2.3
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