Strain Fitness in Escherichia fergusonii Becca around EFB2_01439

Experiment: phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2)
1,507,533	+		EFB2_01438	0.30	-3.0
1,507,533	+		EFB2_01438	0.30	+1.1
1,507,533	+		EFB2_01438	0.30	-3.5
1,507,534	-		EFB2_01438	0.30	+0.2
1,507,571	+		EFB2_01438	0.33	-2.7
1,507,571	+		EFB2_01438	0.33	+1.0
1,507,572	-		EFB2_01438	0.33	+0.2
1,507,583	+		EFB2_01438	0.33	+1.6
1,507,643	+		EFB2_01438	0.38	-0.6
1,507,644	-		EFB2_01438	0.38	+0.7
1,507,659	+		EFB2_01438	0.39	+0.8
1,507,659	+		EFB2_01438	0.39	-2.6
1,507,660	-		EFB2_01438	0.39	+0.0
1,507,660	-		EFB2_01438	0.39	+0.2
1,507,660	-		EFB2_01438	0.39	+3.2
1,507,660	-		EFB2_01438	0.39	+0.2
1,507,660	-		EFB2_01438	0.39	+1.2
1,507,732	+		EFB2_01438	0.44	+1.2
1,507,733	-		EFB2_01438	0.44	-0.8
1,507,755	+		EFB2_01438	0.46	+0.4
1,507,755	+		EFB2_01438	0.46	-1.1
1,507,755	+		EFB2_01438	0.46	+0.4
1,507,755	+		EFB2_01438	0.46	+0.9
1,507,755	+		EFB2_01438	0.46	-3.2
1,507,755	+		EFB2_01438	0.46	+2.0
1,507,755	+		EFB2_01438	0.46	-1.7
1,507,755	+		EFB2_01438	0.46	+0.5
1,507,755	+		EFB2_01438	0.46	+1.3
1,507,755	+		EFB2_01438	0.46	+1.1
1,507,755	+		EFB2_01438	0.46	-0.2
1,507,755	+		EFB2_01438	0.46	+0.5
1,507,755	+		EFB2_01438	0.46	-2.4
1,507,755	+		EFB2_01438	0.46	+1.3
1,507,755	+		EFB2_01438	0.46	+0.8
1,507,755	+		EFB2_01438	0.46	+0.5
1,507,756	-		EFB2_01438	0.46	-1.3
1,507,756	-		EFB2_01438	0.46	+0.5
1,507,756	-		EFB2_01438	0.46	+0.3
1,507,756	-		EFB2_01438	0.46	-1.1
1,507,756	-		EFB2_01438	0.46	-2.8
1,507,756	-		EFB2_01438	0.46	+0.1
1,507,756	-		EFB2_01438	0.46	+0.3
1,507,756	-		EFB2_01438	0.46	+0.4
1,507,756	-		EFB2_01438	0.46	-0.8
1,507,756	-		EFB2_01438	0.46	+0.1
1,507,756	-		EFB2_01438	0.46	+1.2
1,507,756	-		EFB2_01438	0.46	-0.0
1,507,756	-		EFB2_01438	0.46	+0.3
1,507,868	+		EFB2_01438	0.54	+0.3
1,507,869	-		EFB2_01438	0.54	-1.5
1,507,869	-		EFB2_01438	0.54	-1.4
1,507,906	+		EFB2_01438	0.57	+0.2
1,507,907	-		EFB2_01438	0.57	-0.5
1,507,907	-		EFB2_01438	0.57	+0.4
1,507,980	+		EFB2_01438	0.63	-0.5
1,507,980	+		EFB2_01438	0.63	-2.8
1,507,980	+		EFB2_01438	0.63	+1.8
1,507,981	-		EFB2_01438	0.63	-0.2
1,507,981	-		EFB2_01438	0.63	+0.3
1,507,981	-		EFB2_01438	0.63	-1.5
1,508,057	+		EFB2_01438	0.68	+1.2
1,508,057	+		EFB2_01438	0.68	+2.4
1,508,057	+		EFB2_01438	0.68	+2.4
1,508,057	+		EFB2_01438	0.68	-0.1
1,508,058	-		EFB2_01438	0.68	+0.6
1,508,058	-		EFB2_01438	0.68	-1.1
1,508,058	-		EFB2_01438	0.68	-0.3
1,508,061	+		EFB2_01438	0.69	-0.2
1,508,061	+		EFB2_01438	0.69	+2.4
1,508,061	+		EFB2_01438	0.69	+0.1
1,508,062	-		EFB2_01438	0.69	+4.4
1,508,062	-		EFB2_01438	0.69	+1.5
1,508,079	+		EFB2_01438	0.70	-0.4
1,508,079	+		EFB2_01438	0.70	+0.8
1,508,079	+		EFB2_01438	0.70	+1.1
1,508,080	-		EFB2_01438	0.70	-1.2
1,508,080	-		EFB2_01438	0.70	-0.7
1,508,080	-		EFB2_01438	0.70	-0.1
1,508,080	-		EFB2_01438	0.70	+0.3
1,508,090	+		EFB2_01438	0.71	-0.1
1,508,091	-		EFB2_01438	0.71	-2.4
1,508,114	+		EFB2_01438	0.72	-1.2
1,508,115	-		EFB2_01438	0.72	-0.4
1,508,128	-		EFB2_01438	0.73	-0.9
1,508,133	+		EFB2_01438	0.74	-0.4
1,508,133	+		EFB2_01438	0.74	+1.0
1,508,133	+		EFB2_01438	0.74	-0.6
1,508,133	+		EFB2_01438	0.74	+1.4
1,508,133	+		EFB2_01438	0.74	-2.6
1,508,133	+		EFB2_01438	0.74	-2.4
1,508,133	+		EFB2_01438	0.74	-1.3
1,508,133	+		EFB2_01438	0.74	+0.1
1,508,133	+		EFB2_01438	0.74	-0.2
1,508,134	-		EFB2_01438	0.74	+1.8
1,508,134	-		EFB2_01438	0.74	-0.3
1,508,134	-		EFB2_01438	0.74	+0.2
1,508,134	-		EFB2_01438	0.74	+1.3
1,508,134	-		EFB2_01438	0.74	-1.1
1,508,134	-		EFB2_01438	0.74	+0.7
1,508,134	-		EFB2_01438	0.74	+0.6
1,508,134	-		EFB2_01438	0.74	+0.2
1,508,164	+		EFB2_01438	0.76	+0.1
1,508,164	+		EFB2_01438	0.76	+1.1
1,508,165	-		EFB2_01438	0.76	+0.7
1,508,165	-		EFB2_01438	0.76	+1.6
1,508,165	-		EFB2_01438	0.76	-1.6
1,508,177	+		EFB2_01438	0.77	+1.5
1,508,177	+		EFB2_01438	0.77	-0.8
1,508,178	-		EFB2_01438	0.77	-0.8
1,508,178	-		EFB2_01438	0.77	-0.8
1,508,183	+		EFB2_01438	0.77	-0.6
1,508,184	-		EFB2_01438	0.78	-0.3
1,508,201	+		EFB2_01438	0.79	+0.1
1,508,201	+		EFB2_01438	0.79	-0.4
1,508,202	-		EFB2_01438	0.79	+1.8
1,508,202	-		EFB2_01438	0.79	-0.6
1,508,202	-		EFB2_01438	0.79	-0.5
1,508,220	+		EFB2_01438	0.80	+2.4
1,508,220	+		EFB2_01438	0.80	+0.1
1,508,220	+		EFB2_01438	0.80	+0.4
1,508,221	-		EFB2_01438	0.80	+1.4
1,508,221	-		EFB2_01438	0.80	+0.3
1,508,221	-		EFB2_01438	0.80	-0.7
1,508,295	+		EFB2_01438	0.86	+0.1
1,508,295	+		EFB2_01438	0.86	+0.3
1,508,295	+		EFB2_01438	0.86	+0.6
1,508,295	+		EFB2_01438	0.86	+0.7
1,508,295	+		EFB2_01438	0.86	-1.1
1,508,295	+		EFB2_01438	0.86	-0.4
1,508,295	+		EFB2_01438	0.86	+2.0
1,508,295	+		EFB2_01438	0.86	+0.4
1,508,295	+		EFB2_01438	0.86	-0.5
1,508,295	+		EFB2_01438	0.86	-2.2
1,508,295	+		EFB2_01438	0.86	-1.9
1,508,295	+		EFB2_01438	0.86	-1.0
1,508,295	+		EFB2_01438	0.86	+0.4
1,508,295	+		EFB2_01438	0.86	+0.2
1,508,295	+		EFB2_01438	0.86	-3.2
1,508,295	+		EFB2_01438	0.86	-3.6
1,508,296	-		EFB2_01438	0.86	+1.2
1,508,296	-		EFB2_01438	0.86	+0.0
1,508,296	-		EFB2_01438	0.86	+1.0
1,508,296	-		EFB2_01438	0.86	-1.8
1,508,296	-		EFB2_01438	0.86	+0.7
1,508,296	-		EFB2_01438	0.86	+1.4
1,508,296	-		EFB2_01438	0.86	-0.2
1,508,296	-		EFB2_01438	0.86	+0.6
1,508,296	-		EFB2_01438	0.86	+0.8
1,508,296	-		EFB2_01438	0.86	+0.7
1,508,296	-		EFB2_01438	0.86	-1.4
1,508,296	-		EFB2_01438	0.86	+0.3
1,508,296	-		EFB2_01438	0.86	+0.3
1,508,296	-		EFB2_01438	0.86	+0.5
1,508,296	-		EFB2_01438	0.86	+1.4
1,508,296	-		EFB2_01438	0.86	+1.4
1,508,337	+		EFB2_01438	0.89	-0.0
1,508,337	+		EFB2_01438	0.89	+0.2
1,508,337	+		EFB2_01438	0.89	-1.8
1,508,337	+		EFB2_01438	0.89	-1.6
1,508,337	+		EFB2_01438	0.89	+0.3
1,508,337	+		EFB2_01438	0.89	-0.8
1,508,337	+		EFB2_01438	0.89	+0.7
1,508,338	-		EFB2_01438	0.89	-0.4
1,508,338	-		EFB2_01438	0.89	-2.2
1,508,338	-		EFB2_01438	0.89	+0.4
1,508,380	+				-1.7
1,508,381	-				+0.7
1,508,381	-				-0.9
1,508,381	-				+0.9
1,508,381	-				-0.4
1,508,381	-				-2.0
1,508,501	+				+0.0
1,508,501	+				-1.3
1,508,501	+				-0.2
1,508,501	+				+0.3
1,508,501	+				+0.3
1,508,501	+				-0.7
1,508,501	+				+0.3
1,508,502	-				+1.6
1,508,502	-				-2.9
1,508,502	-				+1.0
1,508,502	-				+0.0
1,508,502	-				+0.5
1,508,502	-				+1.3
1,508,502	-				+1.5
1,508,538	+				+3.3
1,508,538	+				+0.6
1,508,538	+				+0.8
1,508,649	+		EFB2_01439	0.16	-4.2
1,508,650	-		EFB2_01439	0.16	+0.1
1,508,650	-		EFB2_01439	0.16	+0.6
1,508,706	+		EFB2_01439	0.22	-0.0
1,508,706	+		EFB2_01439	0.22	+1.0
1,508,706	+		EFB2_01439	0.22	-2.2
1,508,706	+		EFB2_01439	0.22	+1.2
1,508,706	+		EFB2_01439	0.22	+0.1
1,508,706	+		EFB2_01439	0.22	+1.5
1,508,706	+		EFB2_01439	0.22	-3.2
1,508,706	+		EFB2_01439	0.22	+2.3
1,508,706	+		EFB2_01439	0.22	+0.9
1,508,706	+		EFB2_01439	0.22	-1.4
1,508,706	+		EFB2_01439	0.22	-0.4
1,508,706	+		EFB2_01439	0.22	-1.3
1,508,707	-		EFB2_01439	0.22	+0.7
1,508,707	-		EFB2_01439	0.22	+0.4
1,508,707	-		EFB2_01439	0.22	-1.7
1,508,707	-		EFB2_01439	0.22	-1.0
1,508,707	-		EFB2_01439	0.22	-0.2
1,508,707	-		EFB2_01439	0.22	-0.9
1,508,707	-		EFB2_01439	0.22	-0.2
1,508,707	-		EFB2_01439	0.22	+0.8
1,508,709	+		EFB2_01439	0.22	-0.2
1,508,709	+		EFB2_01439	0.22	-2.9
1,508,709	+		EFB2_01439	0.22	+0.7
1,508,747	-		EFB2_01439	0.27	-0.6
1,508,774	-		EFB2_01439	0.30	-1.4
1,508,821	+		EFB2_01439	0.35	-1.8
1,508,821	+		EFB2_01439	0.35	-0.2
1,508,821	+		EFB2_01439	0.35	+0.4
1,508,822	-		EFB2_01439	0.35	-2.2
1,508,822	-		EFB2_01439	0.35	-0.0
1,508,822	-		EFB2_01439	0.35	+2.1
1,508,827	-		EFB2_01439	0.36	+1.0
1,508,838	+		EFB2_01439	0.37	+1.6
1,508,838	+		EFB2_01439	0.37	-1.5
1,508,838	+		EFB2_01439	0.37	-2.4
1,508,906	+		EFB2_01439	0.45	+0.5
1,508,907	-		EFB2_01439	0.45	-2.2
1,508,980	+		EFB2_01439	0.53	-2.9
1,508,980	+		EFB2_01439	0.53	-2.4
1,509,001	+		EFB2_01439	0.55	+1.4
1,509,001	+		EFB2_01439	0.55	+2.0
1,509,002	-		EFB2_01439	0.55	+1.3
1,509,041	+		EFB2_01439	0.60	+1.3
1,509,041	+		EFB2_01439	0.60	-1.4
1,509,041	+		EFB2_01439	0.60	+0.2
1,509,041	+		EFB2_01439	0.60	-0.9
1,509,041	+		EFB2_01439	0.60	-3.5
1,509,042	-		EFB2_01439	0.60	+0.0
1,509,042	-		EFB2_01439	0.60	-0.4
1,509,042	-		EFB2_01439	0.60	-0.2
1,509,042	-		EFB2_01439	0.60	+1.7
1,509,042	-		EFB2_01439	0.60	+1.6
1,509,101	-		EFB2_01439	0.67	+0.3
1,509,114	+		EFB2_01439	0.68	+1.2
1,509,114	+		EFB2_01439	0.68	-0.6
1,509,114	+		EFB2_01439	0.68	+0.7
1,509,114	+		EFB2_01439	0.68	-0.0
1,509,114	+		EFB2_01439	0.68	-2.7
1,509,114	+		EFB2_01439	0.68	-2.6
1,509,114	+		EFB2_01439	0.68	-0.2
1,509,114	+		EFB2_01439	0.68	+0.0
1,509,114	+		EFB2_01439	0.68	+0.0
1,509,115	-		EFB2_01439	0.68	+1.3
1,509,115	-		EFB2_01439	0.68	+1.2
1,509,115	-		EFB2_01439	0.68	-0.2
1,509,115	-		EFB2_01439	0.68	-0.6
1,509,115	-		EFB2_01439	0.68	-2.1
1,509,115	-		EFB2_01439	0.68	+0.7
1,509,115	-		EFB2_01439	0.68	+0.2
1,509,115	-		EFB2_01439	0.68	+0.6
1,509,115	-		EFB2_01439	0.68	+0.3
1,509,115	-		EFB2_01439	0.68	+1.1
1,509,115	-		EFB2_01439	0.68	-0.6
1,509,119	+		EFB2_01439	0.69	-1.0
1,509,119	+		EFB2_01439	0.69	+1.0
1,509,120	-		EFB2_01439	0.69	+1.2
1,509,171	+		EFB2_01439	0.74	+0.0
1,509,171	+		EFB2_01439	0.74	+2.9
1,509,171	+		EFB2_01439	0.74	+1.2
1,509,171	+		EFB2_01439	0.74	-1.4
1,509,171	+		EFB2_01439	0.74	-0.3
1,509,171	+		EFB2_01439	0.74	+1.1
1,509,172	-		EFB2_01439	0.75	+2.2
1,509,172	-		EFB2_01439	0.75	+2.3
1,509,172	-		EFB2_01439	0.75	-2.4
1,509,172	-		EFB2_01439	0.75	+1.3
1,509,231	-		EFB2_01439	0.81	+1.1
1,509,231	-		EFB2_01439	0.81	+0.0
1,509,231	-		EFB2_01439	0.81	-1.7
1,509,240	-		EFB2_01439	0.82	+0.9
1,509,250	+		EFB2_01439	0.83	+0.1
1,509,251	-		EFB2_01439	0.83	-0.2
1,509,283	+		EFB2_01439	0.87	-1.8
1,509,283	+		EFB2_01439	0.87	-1.5
1,509,283	+		EFB2_01439	0.87	+0.2
1,509,283	+		EFB2_01439	0.87	-1.7
1,509,283	+		EFB2_01439	0.87	-1.1
1,509,283	+		EFB2_01439	0.87	-0.8
1,509,283	+		EFB2_01439	0.87	-0.4
1,509,283	+		EFB2_01439	0.87	-0.1
1,509,283	+		EFB2_01439	0.87	-0.8
1,509,283	+		EFB2_01439	0.87	+1.2
1,509,283	+		EFB2_01439	0.87	+1.4
1,509,283	+		EFB2_01439	0.87	+0.4
1,509,283	+		EFB2_01439	0.87	+1.0
1,509,283	+		EFB2_01439	0.87	+1.2
1,509,283	+		EFB2_01439	0.87	+0.9
1,509,283	+		EFB2_01439	0.87	+1.2
1,509,284	-		EFB2_01439	0.87	+1.1
1,509,284	-		EFB2_01439	0.87	-0.2
1,509,284	-		EFB2_01439	0.87	+0.1
1,509,284	-		EFB2_01439	0.87	-0.2
1,509,284	-		EFB2_01439	0.87	+0.5
1,509,284	-		EFB2_01439	0.87	+0.4
1,509,284	-		EFB2_01439	0.87	+1.7
1,509,284	-		EFB2_01439	0.87	+0.4
1,509,284	-		EFB2_01439	0.87	+0.3
1,509,284	-		EFB2_01439	0.87	-0.5
1,509,284	-		EFB2_01439	0.87	-0.0
1,509,284	-		EFB2_01439	0.87	+1.0
1,509,284	-		EFB2_01439	0.87	+1.3
1,509,284	-		EFB2_01439	0.87	+0.6
1,509,284	-		EFB2_01439	0.87	+0.8
1,509,284	-		EFB2_01439	0.87	+0.8
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