Experiment: Xylan from Beechwood 2.5 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_05513 and BACOVA_05514 are separated by 74 nucleotides BACOVA_05514 and BACOVA_05515 are separated by 38 nucleotides BACOVA_05515 and BACOVA_05516 are separated by 44 nucleotides
BACOVA_05513: BACOVA_05513 - hypothetical protein, at 1,024,074 to 1,025,735
_05513
BACOVA_05514: BACOVA_05514 - hypothetical protein, at 1,025,810 to 1,026,001
_05514
BACOVA_05515: BACOVA_05515 - hypothetical protein, at 1,026,040 to 1,026,489
_05515
BACOVA_05516: BACOVA_05516 - hypothetical protein, at 1,026,534 to 1,027,661
_05516
Position (kb)
1025
1026
1027 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1025.879 kb on + strand, within BACOVA_05514 at 1025.879 kb on + strand, within BACOVA_05514 at 1025.879 kb on + strand, within BACOVA_05514 at 1025.879 kb on + strand, within BACOVA_05514 at 1025.879 kb on + strand, within BACOVA_05514 at 1025.879 kb on + strand, within BACOVA_05514 at 1025.881 kb on + strand, within BACOVA_05514 at 1025.881 kb on + strand, within BACOVA_05514 at 1025.902 kb on - strand, within BACOVA_05514 at 1025.902 kb on - strand, within BACOVA_05514 at 1025.902 kb on - strand, within BACOVA_05514 at 1026.021 kb on + strand at 1026.021 kb on + strand at 1026.039 kb on + strand at 1026.039 kb on + strand at 1026.043 kb on + strand at 1026.043 kb on + strand at 1026.044 kb on - strand at 1026.044 kb on - strand at 1026.044 kb on - strand at 1026.044 kb on - strand at 1026.050 kb on - strand at 1026.138 kb on + strand, within BACOVA_05515 at 1026.143 kb on + strand, within BACOVA_05515 at 1026.175 kb on - strand, within BACOVA_05515 at 1026.208 kb on - strand, within BACOVA_05515 at 1026.237 kb on - strand, within BACOVA_05515 at 1026.243 kb on + strand, within BACOVA_05515 at 1026.246 kb on - strand, within BACOVA_05515 at 1026.251 kb on + strand, within BACOVA_05515 at 1026.252 kb on - strand, within BACOVA_05515 at 1026.256 kb on - strand, within BACOVA_05515 at 1026.264 kb on + strand, within BACOVA_05515 at 1026.265 kb on - strand, within BACOVA_05515 at 1026.325 kb on - strand, within BACOVA_05515 at 1026.330 kb on + strand, within BACOVA_05515 at 1026.340 kb on - strand, within BACOVA_05515 at 1026.345 kb on + strand, within BACOVA_05515 at 1026.346 kb on - strand, within BACOVA_05515 at 1026.359 kb on + strand, within BACOVA_05515 at 1026.360 kb on - strand, within BACOVA_05515 at 1026.390 kb on + strand, within BACOVA_05515 at 1026.393 kb on + strand, within BACOVA_05515 at 1026.405 kb on + strand, within BACOVA_05515 at 1026.415 kb on - strand, within BACOVA_05515 at 1026.528 kb on - strand at 1026.561 kb on + strand at 1026.562 kb on - strand at 1026.570 kb on - strand at 1026.570 kb on - strand at 1026.574 kb on - strand at 1026.574 kb on - strand at 1026.574 kb on - strand at 1026.587 kb on - strand at 1026.587 kb on - strand at 1026.594 kb on + strand at 1026.605 kb on + strand at 1026.627 kb on + strand at 1026.637 kb on + strand at 1026.642 kb on - strand at 1026.828 kb on - strand, within BACOVA_05516 at 1026.859 kb on + strand, within BACOVA_05516 at 1026.869 kb on + strand, within BACOVA_05516 at 1026.870 kb on - strand, within BACOVA_05516 at 1026.894 kb on - strand, within BACOVA_05516 at 1026.894 kb on - strand, within BACOVA_05516 at 1026.903 kb on - strand, within BACOVA_05516 at 1026.914 kb on - strand, within BACOVA_05516 at 1026.939 kb on + strand, within BACOVA_05516 at 1026.940 kb on - strand, within BACOVA_05516 at 1026.940 kb on - strand, within BACOVA_05516 at 1026.941 kb on + strand, within BACOVA_05516 at 1026.942 kb on - strand, within BACOVA_05516 at 1026.952 kb on - strand, within BACOVA_05516 at 1026.952 kb on - strand, within BACOVA_05516 at 1026.966 kb on - strand, within BACOVA_05516 at 1026.984 kb on - strand, within BACOVA_05516 at 1027.001 kb on + strand, within BACOVA_05516
Per-strain Table
Position Strand Gene LocusTag Fraction Xylan from Beechwood 2.5 mg/mL (C) remove 1,025,879 + BACOVA_05514 0.36 +0.2 1,025,879 + BACOVA_05514 0.36 +0.2 1,025,879 + BACOVA_05514 0.36 +0.5 1,025,879 + BACOVA_05514 0.36 +0.4 1,025,879 + BACOVA_05514 0.36 +0.5 1,025,879 + BACOVA_05514 0.36 +0.4 1,025,881 + BACOVA_05514 0.37 -0.7 1,025,881 + BACOVA_05514 0.37 -0.4 1,025,902 - BACOVA_05514 0.48 -0.2 1,025,902 - BACOVA_05514 0.48 +2.0 1,025,902 - BACOVA_05514 0.48 +1.5 1,026,021 + -0.6 1,026,021 + -1.3 1,026,039 + -0.3 1,026,039 + +0.3 1,026,043 + -1.5 1,026,043 + -0.8 1,026,044 - +0.8 1,026,044 - -0.5 1,026,044 - +1.0 1,026,044 - -0.8 1,026,050 - +0.3 1,026,138 + BACOVA_05515 0.22 -0.8 1,026,143 + BACOVA_05515 0.23 +0.4 1,026,175 - BACOVA_05515 0.30 -0.6 1,026,208 - BACOVA_05515 0.37 -0.6 1,026,237 - BACOVA_05515 0.44 -0.3 1,026,243 + BACOVA_05515 0.45 -1.3 1,026,246 - BACOVA_05515 0.46 +0.0 1,026,251 + BACOVA_05515 0.47 -0.8 1,026,252 - BACOVA_05515 0.47 -0.2 1,026,256 - BACOVA_05515 0.48 +0.4 1,026,264 + BACOVA_05515 0.50 -1.8 1,026,265 - BACOVA_05515 0.50 -1.1 1,026,325 - BACOVA_05515 0.63 +1.3 1,026,330 + BACOVA_05515 0.64 -2.1 1,026,340 - BACOVA_05515 0.67 -0.6 1,026,345 + BACOVA_05515 0.68 -1.3 1,026,346 - BACOVA_05515 0.68 -1.1 1,026,359 + BACOVA_05515 0.71 +0.2 1,026,360 - BACOVA_05515 0.71 -0.2 1,026,390 + BACOVA_05515 0.78 -0.2 1,026,393 + BACOVA_05515 0.78 +1.5 1,026,405 + BACOVA_05515 0.81 -0.4 1,026,415 - BACOVA_05515 0.83 +1.0 1,026,528 - +0.2 1,026,561 + +0.4 1,026,562 - +0.7 1,026,570 - -0.3 1,026,570 - -1.8 1,026,574 - -0.4 1,026,574 - -0.9 1,026,574 - +0.1 1,026,587 - +0.2 1,026,587 - -0.2 1,026,594 + -1.2 1,026,605 + -0.6 1,026,627 + -0.8 1,026,637 + +0.4 1,026,642 - +0.1 1,026,828 - BACOVA_05516 0.26 +0.1 1,026,859 + BACOVA_05516 0.29 -0.1 1,026,869 + BACOVA_05516 0.30 +0.4 1,026,870 - BACOVA_05516 0.30 -0.8 1,026,894 - BACOVA_05516 0.32 -0.1 1,026,894 - BACOVA_05516 0.32 -0.6 1,026,903 - BACOVA_05516 0.33 -0.5 1,026,914 - BACOVA_05516 0.34 -0.3 1,026,939 + BACOVA_05516 0.36 -0.2 1,026,940 - BACOVA_05516 0.36 -1.2 1,026,940 - BACOVA_05516 0.36 -1.3 1,026,941 + BACOVA_05516 0.36 -0.3 1,026,942 - BACOVA_05516 0.36 -1.3 1,026,952 - BACOVA_05516 0.37 +1.4 1,026,952 - BACOVA_05516 0.37 -0.5 1,026,966 - BACOVA_05516 0.38 +1.0 1,026,984 - BACOVA_05516 0.40 -0.9 1,027,001 + BACOVA_05516 0.41 +0.9
Or see this region's nucleotide sequence