Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_05201

Experiment: Xylan from Beechwood 2.5 mg/mL (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_05200 and BACOVA_05201 are separated by 119 nucleotidesBACOVA_05201 and BACOVA_05202 are separated by 99 nucleotidesBACOVA_05202 and BACOVA_05203 overlap by 8 nucleotides BACOVA_05200: BACOVA_05200 - CBS domain protein, at 699,459 to 700,715 _05200 BACOVA_05201: BACOVA_05201 - hypothetical protein, at 700,835 to 702,976 _05201 BACOVA_05202: BACOVA_05202 - hypothetical protein, at 703,076 to 703,195 _05202 BACOVA_05203: BACOVA_05203 - tetratricopeptide repeat protein, at 703,188 to 706,541 _05203 Position (kb) 700 701 702 703Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 699.864 kb on + strand, within BACOVA_05200at 699.865 kb on - strand, within BACOVA_05200at 699.874 kb on + strand, within BACOVA_05200at 699.877 kb on - strand, within BACOVA_05200at 699.881 kb on + strand, within BACOVA_05200at 699.941 kb on + strand, within BACOVA_05200at 700.197 kb on + strand, within BACOVA_05200at 700.198 kb on - strand, within BACOVA_05200at 700.227 kb on + strand, within BACOVA_05200at 700.230 kb on - strand, within BACOVA_05200at 700.320 kb on - strand, within BACOVA_05200at 700.337 kb on + strand, within BACOVA_05200at 700.338 kb on - strand, within BACOVA_05200at 700.386 kb on - strand, within BACOVA_05200at 700.399 kb on + strand, within BACOVA_05200at 700.426 kb on + strand, within BACOVA_05200at 700.436 kb on + strand, within BACOVA_05200at 700.458 kb on - strand, within BACOVA_05200at 700.465 kb on - strand, within BACOVA_05200at 700.465 kb on - strand, within BACOVA_05200at 700.469 kb on + strand, within BACOVA_05200at 700.495 kb on - strand, within BACOVA_05200at 700.569 kb on + strand, within BACOVA_05200at 700.660 kb on + strandat 700.700 kb on - strandat 700.722 kb on + strandat 700.723 kb on - strandat 700.756 kb on + strandat 700.811 kb on + strandat 701.477 kb on + strand, within BACOVA_05201at 701.844 kb on - strand, within BACOVA_05201at 702.507 kb on + strand, within BACOVA_05201at 702.829 kb on - strandat 702.933 kb on - strandat 702.982 kb on + strandat 702.983 kb on - strandat 702.983 kb on - strandat 702.992 kb on + strandat 702.993 kb on - strandat 702.996 kb on + strandat 702.996 kb on + strandat 703.000 kb on - strandat 703.010 kb on + strandat 703.011 kb on - strandat 703.029 kb on + strandat 703.059 kb on + strandat 703.139 kb on + strand, within BACOVA_05202at 703.140 kb on - strand, within BACOVA_05202at 703.167 kb on + strand, within BACOVA_05202at 703.182 kb on + strand, within BACOVA_05202at 703.183 kb on - strand, within BACOVA_05202at 703.183 kb on - strand, within BACOVA_05202at 703.185 kb on - strandat 703.187 kb on - strandat 703.194 kb on - strandat 703.295 kb on - strandat 703.295 kb on - strandat 703.434 kb on - strandat 703.457 kb on + strandat 703.457 kb on + strandat 703.457 kb on + strandat 703.457 kb on + strandat 703.457 kb on + strandat 703.458 kb on - strandat 703.458 kb on - strandat 703.492 kb on - strandat 703.502 kb on - strandat 703.502 kb on - strandat 703.502 kb on - strandat 703.530 kb on + strand, within BACOVA_05203at 703.541 kb on - strand, within BACOVA_05203at 703.598 kb on - strand, within BACOVA_05203at 703.618 kb on + strand, within BACOVA_05203at 703.627 kb on - strand, within BACOVA_05203at 703.632 kb on + strand, within BACOVA_05203at 703.636 kb on + strand, within BACOVA_05203at 703.743 kb on + strand, within BACOVA_05203at 703.767 kb on - strand, within BACOVA_05203at 703.819 kb on + strand, within BACOVA_05203at 703.835 kb on + strand, within BACOVA_05203at 703.895 kb on - strand, within BACOVA_05203

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Per-strain Table

Position Strand Gene LocusTag Fraction Xylan from Beechwood 2.5 mg/mL (C)
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699,864 + BACOVA_05200 0.32 +1.3
699,865 - BACOVA_05200 0.32 -1.3
699,874 + BACOVA_05200 0.33 -0.2
699,877 - BACOVA_05200 0.33 +1.1
699,881 + BACOVA_05200 0.34 -1.5
699,941 + BACOVA_05200 0.38 -0.8
700,197 + BACOVA_05200 0.59 -1.4
700,198 - BACOVA_05200 0.59 -0.9
700,227 + BACOVA_05200 0.61 -0.3
700,230 - BACOVA_05200 0.61 -3.1
700,320 - BACOVA_05200 0.68 -2.0
700,337 + BACOVA_05200 0.70 +0.2
700,338 - BACOVA_05200 0.70 +0.2
700,386 - BACOVA_05200 0.74 +0.5
700,399 + BACOVA_05200 0.75 -0.6
700,426 + BACOVA_05200 0.77 -1.4
700,436 + BACOVA_05200 0.78 -0.5
700,458 - BACOVA_05200 0.79 -0.5
700,465 - BACOVA_05200 0.80 -0.6
700,465 - BACOVA_05200 0.80 +0.3
700,469 + BACOVA_05200 0.80 -1.1
700,495 - BACOVA_05200 0.82 -2.9
700,569 + BACOVA_05200 0.88 -1.6
700,660 + +0.1
700,700 - -2.1
700,722 + +0.5
700,723 - -1.5
700,756 + +0.7
700,811 + -0.0
701,477 + BACOVA_05201 0.30 -0.9
701,844 - BACOVA_05201 0.47 -0.3
702,507 + BACOVA_05201 0.78 -0.8
702,829 - -0.8
702,933 - -2.1
702,982 + +1.1
702,983 - -3.9
702,983 - -1.3
702,992 + -2.0
702,993 - -1.5
702,996 + -0.5
702,996 + -0.1
703,000 - -2.2
703,010 + -0.1
703,011 - +0.7
703,029 + -0.6
703,059 + +0.8
703,139 + BACOVA_05202 0.53 +0.6
703,140 - BACOVA_05202 0.53 +0.7
703,167 + BACOVA_05202 0.76 -0.2
703,182 + BACOVA_05202 0.88 -1.8
703,183 - BACOVA_05202 0.89 -0.8
703,183 - BACOVA_05202 0.89 -1.6
703,185 - +1.1
703,187 - +1.2
703,194 - +0.0
703,295 - -0.9
703,295 - -2.9
703,434 - +0.1
703,457 + -0.7
703,457 + -0.4
703,457 + +0.8
703,457 + +2.1
703,457 + +0.5
703,458 - -0.4
703,458 - -1.9
703,492 - -1.3
703,502 - -0.7
703,502 - +1.1
703,502 - -0.3
703,530 + BACOVA_05203 0.10 +0.5
703,541 - BACOVA_05203 0.11 -0.3
703,598 - BACOVA_05203 0.12 -1.3
703,618 + BACOVA_05203 0.13 -0.9
703,627 - BACOVA_05203 0.13 -1.9
703,632 + BACOVA_05203 0.13 -0.8
703,636 + BACOVA_05203 0.13 -0.6
703,743 + BACOVA_05203 0.17 +2.5
703,767 - BACOVA_05203 0.17 -0.0
703,819 + BACOVA_05203 0.19 -0.9
703,835 + BACOVA_05203 0.19 +0.2
703,895 - BACOVA_05203 0.21 +0.5

Or see this region's nucleotide sequence