Experiment: Xylan from Beechwood 2.5 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_05126 and BACOVA_05127 are separated by 23 nucleotides BACOVA_05127 and BACOVA_05128 are separated by 28 nucleotides BACOVA_05128 and BACOVA_05129 are separated by 20 nucleotides
BACOVA_05126: BACOVA_05126 - TonB-dependent receptor plug domain protein, at 599,517 to 602,168
_05126
BACOVA_05127: BACOVA_05127 - hypothetical protein, at 602,192 to 603,457
_05127
BACOVA_05128: BACOVA_05128 - ABC transporter, ATP-binding protein, at 603,486 to 604,130
_05128
BACOVA_05129: BACOVA_05129 - hypothetical protein, at 604,151 to 605,728
_05129
Position (kb) 602
603
604 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 601.201 kb on + strand, within BACOVA_05126 at 601.201 kb on + strand, within BACOVA_05126 at 601.202 kb on - strand, within BACOVA_05126 at 601.202 kb on - strand, within BACOVA_05126 at 601.202 kb on - strand, within BACOVA_05126 at 601.308 kb on + strand, within BACOVA_05126 at 601.308 kb on + strand, within BACOVA_05126 at 601.309 kb on - strand, within BACOVA_05126 at 601.309 kb on - strand, within BACOVA_05126 at 601.352 kb on + strand, within BACOVA_05126 at 601.401 kb on - strand, within BACOVA_05126 at 601.432 kb on + strand, within BACOVA_05126 at 601.432 kb on + strand, within BACOVA_05126 at 601.447 kb on + strand, within BACOVA_05126 at 601.452 kb on - strand, within BACOVA_05126 at 601.474 kb on - strand, within BACOVA_05126 at 601.496 kb on + strand, within BACOVA_05126 at 601.652 kb on + strand, within BACOVA_05126 at 601.653 kb on - strand, within BACOVA_05126 at 601.654 kb on + strand, within BACOVA_05126 at 601.655 kb on - strand, within BACOVA_05126 at 601.686 kb on - strand, within BACOVA_05126 at 601.700 kb on + strand, within BACOVA_05126 at 601.701 kb on - strand, within BACOVA_05126 at 601.704 kb on - strand, within BACOVA_05126 at 601.739 kb on - strand, within BACOVA_05126 at 601.760 kb on + strand, within BACOVA_05126 at 601.776 kb on - strand, within BACOVA_05126 at 601.790 kb on - strand, within BACOVA_05126 at 601.832 kb on + strand, within BACOVA_05126 at 601.872 kb on + strand, within BACOVA_05126 at 601.877 kb on + strand, within BACOVA_05126 at 601.904 kb on + strand at 601.925 kb on + strand at 601.928 kb on + strand at 602.010 kb on + strand at 602.015 kb on - strand at 602.044 kb on - strand at 602.060 kb on + strand at 602.060 kb on + strand at 602.066 kb on + strand at 602.067 kb on - strand at 602.067 kb on - strand at 602.074 kb on - strand at 602.109 kb on + strand at 602.110 kb on - strand at 602.130 kb on + strand at 602.131 kb on - strand at 602.131 kb on - strand at 602.139 kb on - strand at 602.153 kb on + strand at 602.169 kb on - strand at 602.173 kb on + strand at 602.173 kb on + strand at 602.187 kb on + strand at 602.187 kb on + strand at 602.194 kb on - strand at 602.240 kb on + strand at 602.245 kb on + strand at 602.275 kb on + strand at 602.275 kb on + strand at 602.276 kb on - strand at 602.282 kb on - strand at 602.325 kb on - strand, within BACOVA_05127 at 602.343 kb on - strand, within BACOVA_05127 at 602.370 kb on - strand, within BACOVA_05127 at 602.384 kb on + strand, within BACOVA_05127 at 602.385 kb on - strand, within BACOVA_05127 at 602.385 kb on - strand, within BACOVA_05127 at 602.435 kb on + strand, within BACOVA_05127 at 602.436 kb on - strand, within BACOVA_05127 at 602.465 kb on + strand, within BACOVA_05127 at 602.466 kb on - strand, within BACOVA_05127 at 602.485 kb on + strand, within BACOVA_05127 at 602.523 kb on - strand, within BACOVA_05127 at 602.523 kb on - strand, within BACOVA_05127 at 602.526 kb on + strand, within BACOVA_05127 at 602.527 kb on - strand, within BACOVA_05127 at 602.545 kb on + strand, within BACOVA_05127 at 602.545 kb on + strand, within BACOVA_05127 at 602.545 kb on + strand, within BACOVA_05127 at 602.549 kb on + strand, within BACOVA_05127 at 602.564 kb on + strand, within BACOVA_05127 at 602.569 kb on + strand, within BACOVA_05127 at 602.569 kb on + strand, within BACOVA_05127 at 602.570 kb on - strand, within BACOVA_05127 at 602.593 kb on - strand, within BACOVA_05127 at 602.618 kb on - strand, within BACOVA_05127 at 602.814 kb on + strand, within BACOVA_05127 at 602.845 kb on + strand, within BACOVA_05127 at 602.846 kb on - strand, within BACOVA_05127 at 602.848 kb on + strand, within BACOVA_05127 at 602.934 kb on + strand, within BACOVA_05127 at 602.957 kb on + strand, within BACOVA_05127 at 602.962 kb on + strand, within BACOVA_05127 at 602.962 kb on + strand, within BACOVA_05127 at 602.962 kb on + strand, within BACOVA_05127 at 602.962 kb on + strand, within BACOVA_05127 at 602.962 kb on + strand, within BACOVA_05127 at 602.962 kb on + strand, within BACOVA_05127 at 602.962 kb on + strand, within BACOVA_05127 at 602.963 kb on - strand, within BACOVA_05127 at 602.963 kb on - strand, within BACOVA_05127 at 603.037 kb on + strand, within BACOVA_05127 at 603.116 kb on + strand, within BACOVA_05127 at 603.172 kb on + strand, within BACOVA_05127 at 603.172 kb on + strand, within BACOVA_05127 at 603.173 kb on - strand, within BACOVA_05127 at 603.176 kb on - strand, within BACOVA_05127 at 603.176 kb on - strand, within BACOVA_05127 at 603.218 kb on - strand, within BACOVA_05127 at 603.221 kb on + strand, within BACOVA_05127 at 603.222 kb on - strand, within BACOVA_05127 at 603.222 kb on - strand, within BACOVA_05127 at 603.291 kb on - strand, within BACOVA_05127 at 603.295 kb on + strand, within BACOVA_05127 at 603.296 kb on - strand, within BACOVA_05127 at 603.303 kb on - strand, within BACOVA_05127 at 603.320 kb on + strand, within BACOVA_05127 at 603.361 kb on + strand at 603.362 kb on - strand at 603.458 kb on + strand at 603.458 kb on + strand at 603.459 kb on - strand at 603.459 kb on - strand at 603.473 kb on - strand at 603.484 kb on + strand at 603.484 kb on + strand at 603.485 kb on - strand at 603.485 kb on - strand at 603.501 kb on - strand at 603.501 kb on - strand at 603.509 kb on - strand at 603.605 kb on + strand, within BACOVA_05128 at 603.763 kb on - strand, within BACOVA_05128 at 603.797 kb on + strand, within BACOVA_05128 at 603.827 kb on + strand, within BACOVA_05128 at 603.847 kb on - strand, within BACOVA_05128 at 603.868 kb on - strand, within BACOVA_05128 at 603.907 kb on + strand, within BACOVA_05128 at 603.967 kb on + strand, within BACOVA_05128 at 603.967 kb on + strand, within BACOVA_05128 at 603.968 kb on - strand, within BACOVA_05128 at 603.971 kb on + strand, within BACOVA_05128 at 603.972 kb on - strand, within BACOVA_05128 at 603.972 kb on - strand, within BACOVA_05128 at 603.973 kb on + strand, within BACOVA_05128 at 603.974 kb on - strand, within BACOVA_05128 at 604.013 kb on - strand, within BACOVA_05128 at 604.021 kb on + strand, within BACOVA_05128 at 604.022 kb on - strand, within BACOVA_05128 at 604.022 kb on - strand, within BACOVA_05128 at 604.022 kb on - strand, within BACOVA_05128 at 604.122 kb on - strand at 604.122 kb on - strand at 604.124 kb on + strand at 604.124 kb on + strand at 604.125 kb on - strand at 604.141 kb on + strand at 604.143 kb on + strand at 604.149 kb on + strand at 604.152 kb on + strand at 604.152 kb on + strand at 604.153 kb on - strand at 604.203 kb on - strand at 604.203 kb on - strand at 604.291 kb on + strand at 604.292 kb on - strand at 604.293 kb on + strand at 604.293 kb on + strand at 604.300 kb on + strand at 604.300 kb on + strand at 604.375 kb on + strand, within BACOVA_05129 at 604.376 kb on - strand, within BACOVA_05129 at 604.376 kb on - strand, within BACOVA_05129 at 604.380 kb on - strand, within BACOVA_05129 at 604.408 kb on - strand, within BACOVA_05129
Per-strain Table
Position Strand Gene LocusTag Fraction Xylan from Beechwood 2.5 mg/mL (C) remove 601,201 + BACOVA_05126 0.63 -1.0 601,201 + BACOVA_05126 0.63 +0.3 601,202 - BACOVA_05126 0.64 -0.5 601,202 - BACOVA_05126 0.64 +0.3 601,202 - BACOVA_05126 0.64 -0.8 601,308 + BACOVA_05126 0.68 -0.2 601,308 + BACOVA_05126 0.68 -0.1 601,309 - BACOVA_05126 0.68 -0.1 601,309 - BACOVA_05126 0.68 +0.2 601,352 + BACOVA_05126 0.69 -0.5 601,401 - BACOVA_05126 0.71 +0.1 601,432 + BACOVA_05126 0.72 -0.9 601,432 + BACOVA_05126 0.72 +0.5 601,447 + BACOVA_05126 0.73 -0.1 601,452 - BACOVA_05126 0.73 -2.1 601,474 - BACOVA_05126 0.74 -0.3 601,496 + BACOVA_05126 0.75 -0.0 601,652 + BACOVA_05126 0.81 +0.1 601,653 - BACOVA_05126 0.81 -0.1 601,654 + BACOVA_05126 0.81 +0.1 601,655 - BACOVA_05126 0.81 -0.7 601,686 - BACOVA_05126 0.82 +0.5 601,700 + BACOVA_05126 0.82 +0.3 601,701 - BACOVA_05126 0.82 -0.1 601,704 - BACOVA_05126 0.82 +0.5 601,739 - BACOVA_05126 0.84 +1.6 601,760 + BACOVA_05126 0.85 +0.6 601,776 - BACOVA_05126 0.85 -0.1 601,790 - BACOVA_05126 0.86 +0.6 601,832 + BACOVA_05126 0.87 -0.0 601,872 + BACOVA_05126 0.89 -0.2 601,877 + BACOVA_05126 0.89 -1.4 601,904 + -0.6 601,925 + +0.2 601,928 + +0.7 602,010 + +0.1 602,015 - -0.7 602,044 - +0.2 602,060 + -0.5 602,060 + +0.3 602,066 + -0.8 602,067 - -0.8 602,067 - -0.5 602,074 - +0.0 602,109 + +0.4 602,110 - -2.8 602,130 + -0.2 602,131 - -0.1 602,131 - -1.9 602,139 - +1.6 602,153 + +1.6 602,169 - +1.5 602,173 + -3.0 602,173 + -0.1 602,187 + +1.5 602,187 + -0.5 602,194 - +0.8 602,240 + -0.3 602,245 + -0.8 602,275 + -1.8 602,275 + -0.5 602,276 - +0.2 602,282 - -1.1 602,325 - BACOVA_05127 0.11 -0.5 602,343 - BACOVA_05127 0.12 -0.6 602,370 - BACOVA_05127 0.14 -0.1 602,384 + BACOVA_05127 0.15 -0.6 602,385 - BACOVA_05127 0.15 -0.3 602,385 - BACOVA_05127 0.15 +0.1 602,435 + BACOVA_05127 0.19 -0.8 602,436 - BACOVA_05127 0.19 +0.2 602,465 + BACOVA_05127 0.22 -0.8 602,466 - BACOVA_05127 0.22 -2.6 602,485 + BACOVA_05127 0.23 -0.8 602,523 - BACOVA_05127 0.26 -0.3 602,523 - BACOVA_05127 0.26 -0.7 602,526 + BACOVA_05127 0.26 -1.2 602,527 - BACOVA_05127 0.26 -0.7 602,545 + BACOVA_05127 0.28 +0.1 602,545 + BACOVA_05127 0.28 -0.9 602,545 + BACOVA_05127 0.28 +0.1 602,549 + BACOVA_05127 0.28 -0.8 602,564 + BACOVA_05127 0.29 +1.1 602,569 + BACOVA_05127 0.30 +1.6 602,569 + BACOVA_05127 0.30 -1.1 602,570 - BACOVA_05127 0.30 +0.1 602,593 - BACOVA_05127 0.32 -2.4 602,618 - BACOVA_05127 0.34 -0.3 602,814 + BACOVA_05127 0.49 -1.3 602,845 + BACOVA_05127 0.52 -0.4 602,846 - BACOVA_05127 0.52 -0.8 602,848 + BACOVA_05127 0.52 +0.2 602,934 + BACOVA_05127 0.59 +0.5 602,957 + BACOVA_05127 0.60 +0.5 602,962 + BACOVA_05127 0.61 -0.5 602,962 + BACOVA_05127 0.61 -1.2 602,962 + BACOVA_05127 0.61 -1.3 602,962 + BACOVA_05127 0.61 -1.1 602,962 + BACOVA_05127 0.61 -1.4 602,962 + BACOVA_05127 0.61 -0.6 602,962 + BACOVA_05127 0.61 -3.4 602,963 - BACOVA_05127 0.61 -0.9 602,963 - BACOVA_05127 0.61 -2.2 603,037 + BACOVA_05127 0.67 -0.7 603,116 + BACOVA_05127 0.73 +3.1 603,172 + BACOVA_05127 0.77 -0.3 603,172 + BACOVA_05127 0.77 +0.9 603,173 - BACOVA_05127 0.77 -0.9 603,176 - BACOVA_05127 0.78 -0.2 603,176 - BACOVA_05127 0.78 -0.4 603,218 - BACOVA_05127 0.81 -2.9 603,221 + BACOVA_05127 0.81 -0.6 603,222 - BACOVA_05127 0.81 -0.9 603,222 - BACOVA_05127 0.81 -0.1 603,291 - BACOVA_05127 0.87 +0.2 603,295 + BACOVA_05127 0.87 -0.6 603,296 - BACOVA_05127 0.87 +0.2 603,303 - BACOVA_05127 0.88 -1.7 603,320 + BACOVA_05127 0.89 +0.2 603,361 + -1.2 603,362 - -1.4 603,458 + -0.8 603,458 + -1.3 603,459 - +0.2 603,459 - +2.7 603,473 - +1.0 603,484 + +1.2 603,484 + -0.9 603,485 - -0.6 603,485 - -0.6 603,501 - -0.2 603,501 - -1.1 603,509 - -0.3 603,605 + BACOVA_05128 0.18 -1.4 603,763 - BACOVA_05128 0.43 -0.3 603,797 + BACOVA_05128 0.48 -1.9 603,827 + BACOVA_05128 0.53 -1.0 603,847 - BACOVA_05128 0.56 +1.7 603,868 - BACOVA_05128 0.59 +0.6 603,907 + BACOVA_05128 0.65 +0.6 603,967 + BACOVA_05128 0.75 +0.6 603,967 + BACOVA_05128 0.75 -2.2 603,968 - BACOVA_05128 0.75 +0.2 603,971 + BACOVA_05128 0.75 -0.2 603,972 - BACOVA_05128 0.75 +0.5 603,972 - BACOVA_05128 0.75 -0.5 603,973 + BACOVA_05128 0.76 -1.9 603,974 - BACOVA_05128 0.76 -0.3 604,013 - BACOVA_05128 0.82 -1.0 604,021 + BACOVA_05128 0.83 -1.2 604,022 - BACOVA_05128 0.83 -1.6 604,022 - BACOVA_05128 0.83 -1.1 604,022 - BACOVA_05128 0.83 +0.1 604,122 - -2.1 604,122 - -2.3 604,124 + +0.2 604,124 + -1.1 604,125 - -0.6 604,141 + +1.0 604,143 + +0.5 604,149 + -2.4 604,152 + -0.1 604,152 + -1.1 604,153 - +0.4 604,203 - -0.6 604,203 - +2.6 604,291 + -0.2 604,292 - -0.9 604,293 + -1.2 604,293 + +1.1 604,300 + -2.2 604,300 + -0.1 604,375 + BACOVA_05129 0.14 -1.2 604,376 - BACOVA_05129 0.14 +0.3 604,376 - BACOVA_05129 0.14 -0.3 604,380 - BACOVA_05129 0.15 +0.4 604,408 - BACOVA_05129 0.16 -1.4
Or see this region's nucleotide sequence