Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_04619

Experiment: Xylan from Beechwood 2.5 mg/mL (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_04618 and BACOVA_04619 are separated by 57 nucleotidesBACOVA_04619 and BACOVA_04620 are separated by 415 nucleotidesBACOVA_04620 and BACOVA_04621 are separated by 82 nucleotides BACOVA_04618: BACOVA_04618 - putative S-adenosylmethionine:tRNA ribosyltransferase-isomerase, at 15,503 to 16,723 _04618 BACOVA_04619: BACOVA_04619 - tRNA-Pro, at 16,781 to 16,855 _04619 BACOVA_04620: BACOVA_04620 - hypothetical protein, at 17,271 to 17,423 _04620 BACOVA_04621: BACOVA_04621 - site-specific recombinase, phage integrase family, at 17,506 to 18,780 _04621 Position (kb) 16 17Strain fitness (log2 ratio) -2 -1 0 1 2at 15.783 kb on + strand, within BACOVA_04618at 15.815 kb on + strand, within BACOVA_04618at 15.829 kb on + strand, within BACOVA_04618at 15.829 kb on + strand, within BACOVA_04618at 15.834 kb on + strand, within BACOVA_04618at 15.853 kb on + strand, within BACOVA_04618at 15.853 kb on + strand, within BACOVA_04618at 15.854 kb on - strand, within BACOVA_04618at 15.854 kb on - strand, within BACOVA_04618at 15.896 kb on - strand, within BACOVA_04618at 15.903 kb on - strand, within BACOVA_04618at 15.911 kb on - strand, within BACOVA_04618at 15.963 kb on - strand, within BACOVA_04618at 15.963 kb on - strand, within BACOVA_04618at 15.964 kb on + strand, within BACOVA_04618at 15.966 kb on + strand, within BACOVA_04618at 15.967 kb on - strand, within BACOVA_04618at 15.967 kb on - strand, within BACOVA_04618at 15.967 kb on - strand, within BACOVA_04618at 15.967 kb on - strand, within BACOVA_04618at 16.032 kb on - strand, within BACOVA_04618at 16.037 kb on + strand, within BACOVA_04618at 16.037 kb on + strand, within BACOVA_04618at 16.038 kb on - strand, within BACOVA_04618at 16.038 kb on - strand, within BACOVA_04618at 16.038 kb on - strand, within BACOVA_04618at 16.085 kb on + strand, within BACOVA_04618at 16.103 kb on + strand, within BACOVA_04618at 16.135 kb on + strand, within BACOVA_04618at 16.142 kb on - strand, within BACOVA_04618at 16.147 kb on - strand, within BACOVA_04618at 16.158 kb on + strand, within BACOVA_04618at 16.159 kb on - strand, within BACOVA_04618at 16.193 kb on + strand, within BACOVA_04618at 16.197 kb on + strand, within BACOVA_04618at 16.207 kb on + strand, within BACOVA_04618at 16.295 kb on - strand, within BACOVA_04618at 16.324 kb on + strand, within BACOVA_04618at 16.563 kb on + strand, within BACOVA_04618at 16.594 kb on + strand, within BACOVA_04618at 16.594 kb on + strand, within BACOVA_04618at 16.612 kb on - strandat 16.613 kb on + strandat 16.614 kb on - strandat 16.614 kb on - strandat 16.616 kb on + strandat 16.617 kb on - strandat 16.654 kb on + strandat 16.660 kb on + strandat 16.660 kb on + strandat 16.660 kb on + strandat 16.661 kb on - strandat 16.686 kb on + strandat 16.686 kb on + strandat 16.687 kb on - strandat 16.687 kb on - strandat 16.696 kb on + strandat 16.697 kb on - strandat 16.702 kb on + strandat 16.703 kb on - strandat 16.703 kb on - strandat 16.703 kb on - strandat 16.919 kb on + strandat 16.933 kb on + strandat 16.933 kb on + strandat 17.020 kb on + strandat 17.021 kb on - strandat 17.024 kb on + strandat 17.082 kb on + strandat 17.153 kb on - strandat 17.162 kb on - strandat 17.162 kb on - strandat 17.164 kb on - strandat 17.334 kb on - strand, within BACOVA_04620at 17.479 kb on - strandat 17.530 kb on - strandat 17.535 kb on + strandat 17.597 kb on + strandat 17.597 kb on + strandat 17.598 kb on - strandat 17.603 kb on + strandat 17.622 kb on + strandat 17.623 kb on - strandat 17.632 kb on + strandat 17.670 kb on + strand, within BACOVA_04621at 17.680 kb on - strand, within BACOVA_04621at 17.692 kb on - strand, within BACOVA_04621at 17.701 kb on - strand, within BACOVA_04621at 17.720 kb on - strand, within BACOVA_04621at 17.720 kb on - strand, within BACOVA_04621at 17.720 kb on - strand, within BACOVA_04621at 17.728 kb on + strand, within BACOVA_04621at 17.728 kb on + strand, within BACOVA_04621at 17.728 kb on + strand, within BACOVA_04621at 17.729 kb on - strand, within BACOVA_04621at 17.730 kb on + strand, within BACOVA_04621at 17.730 kb on + strand, within BACOVA_04621at 17.750 kb on - strand, within BACOVA_04621at 17.766 kb on + strand, within BACOVA_04621at 17.766 kb on + strand, within BACOVA_04621at 17.766 kb on + strand, within BACOVA_04621at 17.774 kb on + strand, within BACOVA_04621at 17.798 kb on + strand, within BACOVA_04621

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Per-strain Table

Position Strand Gene LocusTag Fraction Xylan from Beechwood 2.5 mg/mL (C)
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15,783 + BACOVA_04618 0.23 -0.2
15,815 + BACOVA_04618 0.26 -1.0
15,829 + BACOVA_04618 0.27 +1.5
15,829 + BACOVA_04618 0.27 +0.4
15,834 + BACOVA_04618 0.27 -0.2
15,853 + BACOVA_04618 0.29 +0.4
15,853 + BACOVA_04618 0.29 -2.0
15,854 - BACOVA_04618 0.29 -1.4
15,854 - BACOVA_04618 0.29 +1.8
15,896 - BACOVA_04618 0.32 -1.0
15,903 - BACOVA_04618 0.33 +0.2
15,911 - BACOVA_04618 0.33 -0.7
15,963 - BACOVA_04618 0.38 -0.0
15,963 - BACOVA_04618 0.38 -1.6
15,964 + BACOVA_04618 0.38 -1.4
15,966 + BACOVA_04618 0.38 +0.1
15,967 - BACOVA_04618 0.38 +0.7
15,967 - BACOVA_04618 0.38 +0.3
15,967 - BACOVA_04618 0.38 +0.3
15,967 - BACOVA_04618 0.38 +0.3
16,032 - BACOVA_04618 0.43 -0.7
16,037 + BACOVA_04618 0.44 +1.3
16,037 + BACOVA_04618 0.44 -0.9
16,038 - BACOVA_04618 0.44 -1.2
16,038 - BACOVA_04618 0.44 -1.0
16,038 - BACOVA_04618 0.44 -1.0
16,085 + BACOVA_04618 0.48 -0.2
16,103 + BACOVA_04618 0.49 -0.2
16,135 + BACOVA_04618 0.52 -0.4
16,142 - BACOVA_04618 0.52 -1.6
16,147 - BACOVA_04618 0.53 +0.6
16,158 + BACOVA_04618 0.54 -0.4
16,159 - BACOVA_04618 0.54 -0.5
16,193 + BACOVA_04618 0.57 -0.4
16,197 + BACOVA_04618 0.57 -1.4
16,207 + BACOVA_04618 0.58 -1.3
16,295 - BACOVA_04618 0.65 -2.2
16,324 + BACOVA_04618 0.67 +0.6
16,563 + BACOVA_04618 0.87 +1.4
16,594 + BACOVA_04618 0.89 -0.2
16,594 + BACOVA_04618 0.89 -0.3
16,612 - -0.7
16,613 + +0.1
16,614 - -1.1
16,614 - -0.4
16,616 + +0.8
16,617 - +0.5
16,654 + -0.7
16,660 + -0.9
16,660 + -2.6
16,660 + -1.1
16,661 - +0.6
16,686 + -0.9
16,686 + +0.5
16,687 - -1.3
16,687 - -1.3
16,696 + -1.1
16,697 - +0.1
16,702 + -0.5
16,703 - -1.1
16,703 - -0.9
16,703 - +1.0
16,919 + +0.0
16,933 + -0.2
16,933 + +0.0
17,020 + +0.3
17,021 - +0.2
17,024 + -0.0
17,082 + -0.8
17,153 - -0.1
17,162 - -0.4
17,162 - +0.2
17,164 - -0.6
17,334 - BACOVA_04620 0.41 -0.6
17,479 - +0.1
17,530 - +0.3
17,535 + -0.7
17,597 + +0.5
17,597 + -0.9
17,598 - +0.1
17,603 + -0.9
17,622 + +0.6
17,623 - +0.0
17,632 + +0.0
17,670 + BACOVA_04621 0.13 -1.9
17,680 - BACOVA_04621 0.14 -0.3
17,692 - BACOVA_04621 0.15 -0.6
17,701 - BACOVA_04621 0.15 -0.7
17,720 - BACOVA_04621 0.17 +1.1
17,720 - BACOVA_04621 0.17 +0.1
17,720 - BACOVA_04621 0.17 +0.9
17,728 + BACOVA_04621 0.17 -0.8
17,728 + BACOVA_04621 0.17 -0.9
17,728 + BACOVA_04621 0.17 -0.3
17,729 - BACOVA_04621 0.17 -0.7
17,730 + BACOVA_04621 0.18 -2.3
17,730 + BACOVA_04621 0.18 -0.6
17,750 - BACOVA_04621 0.19 +0.0
17,766 + BACOVA_04621 0.20 -1.4
17,766 + BACOVA_04621 0.20 +0.9
17,766 + BACOVA_04621 0.20 -0.9
17,774 + BACOVA_04621 0.21 -0.9
17,798 + BACOVA_04621 0.23 -0.7

Or see this region's nucleotide sequence