Experiment: Xylan from Beechwood 2.5 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_02456 and BACOVA_02457 are separated by 51 nucleotides BACOVA_02457 and BACOVA_02458 are separated by 80 nucleotides BACOVA_02458 and BACOVA_02459 overlap by 22 nucleotides BACOVA_02459 and BACOVA_02460 overlap by 4 nucleotides
BACOVA_02456: BACOVA_02456 - hypothetical protein, at 218,981 to 219,121
_02456
BACOVA_02457: BACOVA_02457 - transcription termination/antitermination factor NusG, at 219,173 to 219,748
_02457
BACOVA_02458: BACOVA_02458 - polysaccharide biosynthesis protein, at 219,829 to 221,364
_02458
BACOVA_02459: BACOVA_02459 - acyltransferase, at 221,343 to 222,335
_02459
BACOVA_02460: BACOVA_02460 - 4Fe-4S binding domain protein, at 222,332 to 223,480
_02460
Position (kb) 219
220
221
222 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 219.597 kb on + strand, within BACOVA_02457 at 219.630 kb on + strand, within BACOVA_02457 at 219.644 kb on - strand, within BACOVA_02457 at 219.644 kb on - strand, within BACOVA_02457 at 219.648 kb on + strand, within BACOVA_02457 at 219.648 kb on + strand, within BACOVA_02457 at 219.648 kb on + strand, within BACOVA_02457 at 219.655 kb on + strand, within BACOVA_02457 at 219.662 kb on - strand, within BACOVA_02457 at 219.683 kb on - strand, within BACOVA_02457 at 219.719 kb on + strand at 219.768 kb on + strand at 219.768 kb on + strand at 219.769 kb on - strand at 219.776 kb on - strand at 219.776 kb on - strand at 219.776 kb on - strand at 219.803 kb on - strand at 219.807 kb on + strand at 219.807 kb on + strand at 219.808 kb on - strand at 219.808 kb on - strand at 219.814 kb on - strand at 219.814 kb on - strand at 219.815 kb on + strand at 219.816 kb on - strand at 219.870 kb on + strand at 219.891 kb on + strand at 219.892 kb on - strand at 219.917 kb on + strand at 219.918 kb on - strand at 219.920 kb on - strand at 219.922 kb on - strand at 219.936 kb on - strand at 219.939 kb on - strand at 219.969 kb on - strand at 219.971 kb on - strand at 219.971 kb on - strand at 219.971 kb on - strand at 219.971 kb on - strand at 219.971 kb on - strand at 219.973 kb on - strand at 219.981 kb on - strand at 219.981 kb on - strand at 219.981 kb on - strand at 219.993 kb on - strand, within BACOVA_02458 at 220.119 kb on - strand, within BACOVA_02458 at 220.137 kb on - strand, within BACOVA_02458 at 220.146 kb on - strand, within BACOVA_02458 at 220.189 kb on - strand, within BACOVA_02458 at 220.275 kb on + strand, within BACOVA_02458 at 220.285 kb on - strand, within BACOVA_02458 at 220.290 kb on - strand, within BACOVA_02458 at 220.319 kb on - strand, within BACOVA_02458 at 220.319 kb on - strand, within BACOVA_02458 at 220.320 kb on + strand, within BACOVA_02458 at 220.321 kb on - strand, within BACOVA_02458 at 220.321 kb on - strand, within BACOVA_02458 at 220.327 kb on - strand, within BACOVA_02458 at 220.327 kb on - strand, within BACOVA_02458 at 220.328 kb on + strand, within BACOVA_02458 at 220.339 kb on - strand, within BACOVA_02458 at 220.339 kb on - strand, within BACOVA_02458 at 220.350 kb on + strand, within BACOVA_02458 at 220.351 kb on - strand, within BACOVA_02458 at 220.354 kb on - strand, within BACOVA_02458 at 220.374 kb on - strand, within BACOVA_02458 at 220.380 kb on + strand, within BACOVA_02458 at 220.422 kb on - strand, within BACOVA_02458 at 220.422 kb on - strand, within BACOVA_02458 at 220.441 kb on - strand, within BACOVA_02458 at 220.441 kb on - strand, within BACOVA_02458 at 220.445 kb on - strand, within BACOVA_02458 at 220.454 kb on - strand, within BACOVA_02458 at 220.620 kb on - strand, within BACOVA_02458 at 220.642 kb on - strand, within BACOVA_02458 at 220.642 kb on - strand, within BACOVA_02458 at 220.642 kb on - strand, within BACOVA_02458 at 220.695 kb on - strand, within BACOVA_02458 at 220.781 kb on - strand, within BACOVA_02458 at 220.782 kb on + strand, within BACOVA_02458 at 220.783 kb on - strand, within BACOVA_02458 at 220.826 kb on - strand, within BACOVA_02458 at 220.828 kb on - strand, within BACOVA_02458 at 220.839 kb on - strand, within BACOVA_02458 at 220.929 kb on + strand, within BACOVA_02458 at 220.951 kb on - strand, within BACOVA_02458 at 221.007 kb on - strand, within BACOVA_02458 at 221.007 kb on - strand, within BACOVA_02458 at 221.007 kb on - strand, within BACOVA_02458 at 221.007 kb on - strand, within BACOVA_02458 at 221.011 kb on + strand, within BACOVA_02458 at 221.012 kb on - strand, within BACOVA_02458 at 221.012 kb on - strand, within BACOVA_02458 at 221.014 kb on - strand, within BACOVA_02458 at 221.049 kb on - strand, within BACOVA_02458 at 221.064 kb on - strand, within BACOVA_02458 at 221.068 kb on - strand, within BACOVA_02458 at 221.099 kb on - strand, within BACOVA_02458 at 221.099 kb on - strand, within BACOVA_02458 at 221.193 kb on - strand, within BACOVA_02458 at 221.241 kb on - strand at 221.253 kb on - strand at 221.266 kb on - strand at 221.372 kb on + strand at 221.372 kb on + strand at 221.383 kb on + strand at 221.388 kb on - strand at 221.399 kb on + strand at 221.420 kb on - strand at 221.440 kb on + strand at 221.441 kb on - strand at 221.442 kb on + strand at 221.442 kb on + strand at 221.443 kb on - strand, within BACOVA_02459 at 221.443 kb on - strand, within BACOVA_02459 at 221.449 kb on + strand, within BACOVA_02459 at 221.505 kb on + strand, within BACOVA_02459 at 221.530 kb on + strand, within BACOVA_02459 at 221.531 kb on - strand, within BACOVA_02459 at 221.546 kb on - strand, within BACOVA_02459 at 221.556 kb on - strand, within BACOVA_02459 at 221.589 kb on - strand, within BACOVA_02459 at 221.589 kb on - strand, within BACOVA_02459 at 221.609 kb on + strand, within BACOVA_02459 at 221.610 kb on - strand, within BACOVA_02459 at 221.610 kb on - strand, within BACOVA_02459 at 221.626 kb on + strand, within BACOVA_02459 at 221.627 kb on - strand, within BACOVA_02459 at 221.627 kb on - strand, within BACOVA_02459 at 221.644 kb on - strand, within BACOVA_02459 at 221.644 kb on - strand, within BACOVA_02459 at 221.644 kb on - strand, within BACOVA_02459 at 221.644 kb on - strand, within BACOVA_02459 at 221.685 kb on - strand, within BACOVA_02459 at 221.715 kb on + strand, within BACOVA_02459 at 221.731 kb on + strand, within BACOVA_02459 at 221.731 kb on + strand, within BACOVA_02459 at 221.740 kb on + strand, within BACOVA_02459 at 221.759 kb on - strand, within BACOVA_02459 at 221.767 kb on - strand, within BACOVA_02459
Per-strain Table
Position Strand Gene LocusTag Fraction Xylan from Beechwood 2.5 mg/mL (C) remove 219,597 + BACOVA_02457 0.74 +0.9 219,630 + BACOVA_02457 0.79 -0.2 219,644 - BACOVA_02457 0.82 -0.0 219,644 - BACOVA_02457 0.82 -0.8 219,648 + BACOVA_02457 0.82 -0.7 219,648 + BACOVA_02457 0.82 -1.5 219,648 + BACOVA_02457 0.82 -0.7 219,655 + BACOVA_02457 0.84 -1.0 219,662 - BACOVA_02457 0.85 -0.6 219,683 - BACOVA_02457 0.89 +0.3 219,719 + -0.0 219,768 + -2.0 219,768 + -0.1 219,769 - +1.4 219,776 - +0.6 219,776 - -1.1 219,776 - +0.7 219,803 - +0.1 219,807 + -0.3 219,807 + -2.2 219,808 - +0.3 219,808 - -0.4 219,814 - +1.1 219,814 - -0.3 219,815 + +0.8 219,816 - +0.6 219,870 + -1.3 219,891 + -0.4 219,892 - +1.6 219,917 + -0.7 219,918 - +1.9 219,920 - -1.6 219,922 - +0.3 219,936 - +1.5 219,939 - -0.9 219,969 - +1.5 219,971 - +1.3 219,971 - -0.3 219,971 - +0.3 219,971 - +1.7 219,971 - +1.5 219,973 - +1.2 219,981 - +0.2 219,981 - +1.6 219,981 - +0.7 219,993 - BACOVA_02458 0.11 +0.8 220,119 - BACOVA_02458 0.19 -0.4 220,137 - BACOVA_02458 0.20 +1.3 220,146 - BACOVA_02458 0.21 -1.0 220,189 - BACOVA_02458 0.23 -0.1 220,275 + BACOVA_02458 0.29 -0.1 220,285 - BACOVA_02458 0.30 -2.0 220,290 - BACOVA_02458 0.30 +0.2 220,319 - BACOVA_02458 0.32 +0.7 220,319 - BACOVA_02458 0.32 +1.0 220,320 + BACOVA_02458 0.32 -1.2 220,321 - BACOVA_02458 0.32 -0.2 220,321 - BACOVA_02458 0.32 +0.9 220,327 - BACOVA_02458 0.32 +1.5 220,327 - BACOVA_02458 0.32 -0.4 220,328 + BACOVA_02458 0.32 +1.5 220,339 - BACOVA_02458 0.33 +0.5 220,339 - BACOVA_02458 0.33 +0.9 220,350 + BACOVA_02458 0.34 +0.9 220,351 - BACOVA_02458 0.34 +0.5 220,354 - BACOVA_02458 0.34 +1.5 220,374 - BACOVA_02458 0.35 +0.4 220,380 + BACOVA_02458 0.36 +0.7 220,422 - BACOVA_02458 0.39 +0.9 220,422 - BACOVA_02458 0.39 +1.2 220,441 - BACOVA_02458 0.40 -0.1 220,441 - BACOVA_02458 0.40 -1.2 220,445 - BACOVA_02458 0.40 +0.3 220,454 - BACOVA_02458 0.41 +0.7 220,620 - BACOVA_02458 0.51 +2.1 220,642 - BACOVA_02458 0.53 -0.0 220,642 - BACOVA_02458 0.53 +1.1 220,642 - BACOVA_02458 0.53 -1.6 220,695 - BACOVA_02458 0.56 +1.3 220,781 - BACOVA_02458 0.62 +0.3 220,782 + BACOVA_02458 0.62 -1.5 220,783 - BACOVA_02458 0.62 +0.2 220,826 - BACOVA_02458 0.65 +1.0 220,828 - BACOVA_02458 0.65 -0.1 220,839 - BACOVA_02458 0.66 +1.3 220,929 + BACOVA_02458 0.72 -0.5 220,951 - BACOVA_02458 0.73 -0.9 221,007 - BACOVA_02458 0.77 -1.4 221,007 - BACOVA_02458 0.77 +0.0 221,007 - BACOVA_02458 0.77 +1.1 221,007 - BACOVA_02458 0.77 -0.4 221,011 + BACOVA_02458 0.77 -0.7 221,012 - BACOVA_02458 0.77 -0.2 221,012 - BACOVA_02458 0.77 -0.9 221,014 - BACOVA_02458 0.77 +1.1 221,049 - BACOVA_02458 0.79 +1.5 221,064 - BACOVA_02458 0.80 +1.6 221,068 - BACOVA_02458 0.81 -1.4 221,099 - BACOVA_02458 0.83 +0.5 221,099 - BACOVA_02458 0.83 -1.4 221,193 - BACOVA_02458 0.89 +1.9 221,241 - -1.1 221,253 - +2.3 221,266 - -1.4 221,372 + -0.5 221,372 + -1.1 221,383 + +0.6 221,388 - +1.2 221,399 + +0.7 221,420 - +1.3 221,440 + +1.3 221,441 - +0.1 221,442 + +1.2 221,442 + -0.1 221,443 - BACOVA_02459 0.10 -4.2 221,443 - BACOVA_02459 0.10 +1.2 221,449 + BACOVA_02459 0.11 -1.0 221,505 + BACOVA_02459 0.16 -0.7 221,530 + BACOVA_02459 0.19 -0.7 221,531 - BACOVA_02459 0.19 +0.9 221,546 - BACOVA_02459 0.20 -0.4 221,556 - BACOVA_02459 0.21 +1.2 221,589 - BACOVA_02459 0.25 +0.3 221,589 - BACOVA_02459 0.25 +1.2 221,609 + BACOVA_02459 0.27 +1.9 221,610 - BACOVA_02459 0.27 +1.2 221,610 - BACOVA_02459 0.27 +1.6 221,626 + BACOVA_02459 0.28 -2.0 221,627 - BACOVA_02459 0.29 -0.4 221,627 - BACOVA_02459 0.29 +1.2 221,644 - BACOVA_02459 0.30 -0.2 221,644 - BACOVA_02459 0.30 -1.5 221,644 - BACOVA_02459 0.30 +0.3 221,644 - BACOVA_02459 0.30 +1.7 221,685 - BACOVA_02459 0.34 +2.1 221,715 + BACOVA_02459 0.37 -0.9 221,731 + BACOVA_02459 0.39 +1.8 221,731 + BACOVA_02459 0.39 -0.5 221,740 + BACOVA_02459 0.40 +1.9 221,759 - BACOVA_02459 0.42 -0.7 221,767 - BACOVA_02459 0.43 +0.4
Or see this region's nucleotide sequence