Experiment: Xylan from Beechwood 2.5 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_02424 and BACOVA_02425 are separated by 28 nucleotides BACOVA_02425 and BACOVA_02426 overlap by 4 nucleotides BACOVA_02426 and BACOVA_02427 are separated by 179 nucleotides BACOVA_02427 and BACOVA_02428 are separated by 133 nucleotides
BACOVA_02424: BACOVA_02424 - HRDC domain protein, at 188,809 to 191,406
_02424
BACOVA_02425: BACOVA_02425 - hypothetical protein, at 191,435 to 192,055
_02425
BACOVA_02426: BACOVA_02426 - hypothetical protein, at 192,052 to 192,309
_02426
BACOVA_02427: BACOVA_02427 - hypothetical protein, at 192,489 to 192,599
_02427
BACOVA_02428: BACOVA_02428 - putative dTDP-4-dehydrorhamnose reductase, at 192,733 to 193,644
_02428
Position (kb) 191
192
193 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 190.448 kb on - strand, within BACOVA_02424 at 190.458 kb on + strand, within BACOVA_02424 at 190.459 kb on - strand, within BACOVA_02424 at 190.462 kb on - strand, within BACOVA_02424 at 190.462 kb on - strand, within BACOVA_02424 at 190.474 kb on - strand, within BACOVA_02424 at 190.474 kb on - strand, within BACOVA_02424 at 190.477 kb on - strand, within BACOVA_02424 at 190.477 kb on - strand, within BACOVA_02424 at 190.614 kb on - strand, within BACOVA_02424 at 190.638 kb on + strand, within BACOVA_02424 at 190.639 kb on - strand, within BACOVA_02424 at 190.819 kb on + strand, within BACOVA_02424 at 190.896 kb on - strand, within BACOVA_02424 at 190.963 kb on - strand, within BACOVA_02424 at 191.002 kb on - strand, within BACOVA_02424 at 191.006 kb on + strand, within BACOVA_02424 at 191.006 kb on + strand, within BACOVA_02424 at 191.031 kb on + strand, within BACOVA_02424 at 191.136 kb on + strand, within BACOVA_02424 at 191.231 kb on - strand at 191.281 kb on - strand at 191.317 kb on + strand at 191.318 kb on - strand at 191.318 kb on - strand at 191.418 kb on - strand at 191.420 kb on + strand at 191.553 kb on - strand, within BACOVA_02425 at 191.748 kb on + strand, within BACOVA_02425 at 191.909 kb on - strand, within BACOVA_02425 at 191.931 kb on - strand, within BACOVA_02425 at 191.936 kb on + strand, within BACOVA_02425 at 191.942 kb on + strand, within BACOVA_02425 at 191.950 kb on - strand, within BACOVA_02425 at 191.950 kb on - strand, within BACOVA_02425 at 192.011 kb on - strand at 192.030 kb on - strand at 192.032 kb on + strand at 192.033 kb on - strand at 192.079 kb on + strand, within BACOVA_02426 at 192.264 kb on + strand, within BACOVA_02426 at 192.280 kb on + strand, within BACOVA_02426 at 192.280 kb on + strand, within BACOVA_02426 at 192.281 kb on - strand, within BACOVA_02426 at 192.336 kb on + strand at 192.337 kb on - strand at 192.337 kb on - strand at 192.338 kb on + strand at 192.434 kb on + strand at 192.572 kb on + strand, within BACOVA_02427 at 192.577 kb on - strand, within BACOVA_02427 at 192.636 kb on - strand at 192.719 kb on - strand at 192.810 kb on + strand at 192.811 kb on - strand at 192.991 kb on + strand, within BACOVA_02428 at 193.019 kb on + strand, within BACOVA_02428 at 193.019 kb on + strand, within BACOVA_02428 at 193.054 kb on + strand, within BACOVA_02428
Per-strain Table
Position Strand Gene LocusTag Fraction Xylan from Beechwood 2.5 mg/mL (C) remove 190,448 - BACOVA_02424 0.63 -0.5 190,458 + BACOVA_02424 0.63 -1.3 190,459 - BACOVA_02424 0.64 -2.1 190,462 - BACOVA_02424 0.64 -0.1 190,462 - BACOVA_02424 0.64 -0.9 190,474 - BACOVA_02424 0.64 -0.6 190,474 - BACOVA_02424 0.64 -0.8 190,477 - BACOVA_02424 0.64 +0.0 190,477 - BACOVA_02424 0.64 -0.4 190,614 - BACOVA_02424 0.69 -1.3 190,638 + BACOVA_02424 0.70 -0.3 190,639 - BACOVA_02424 0.70 -1.0 190,819 + BACOVA_02424 0.77 +0.4 190,896 - BACOVA_02424 0.80 -0.3 190,963 - BACOVA_02424 0.83 +0.5 191,002 - BACOVA_02424 0.84 -0.1 191,006 + BACOVA_02424 0.85 -0.3 191,006 + BACOVA_02424 0.85 -1.1 191,031 + BACOVA_02424 0.86 +0.2 191,136 + BACOVA_02424 0.90 +0.8 191,231 - +0.9 191,281 - -1.4 191,317 + +0.1 191,318 - -1.1 191,318 - +1.9 191,418 - +0.1 191,420 + +0.2 191,553 - BACOVA_02425 0.19 -0.7 191,748 + BACOVA_02425 0.50 -0.9 191,909 - BACOVA_02425 0.76 -0.9 191,931 - BACOVA_02425 0.80 +1.7 191,936 + BACOVA_02425 0.81 -0.4 191,942 + BACOVA_02425 0.82 -0.9 191,950 - BACOVA_02425 0.83 -0.7 191,950 - BACOVA_02425 0.83 -1.7 192,011 - +2.3 192,030 - +0.3 192,032 + +0.6 192,033 - -0.7 192,079 + BACOVA_02426 0.10 -0.9 192,264 + BACOVA_02426 0.82 -1.7 192,280 + BACOVA_02426 0.88 +0.1 192,280 + BACOVA_02426 0.88 -1.1 192,281 - BACOVA_02426 0.89 -0.1 192,336 + +0.6 192,337 - -0.0 192,337 - -0.0 192,338 + +0.3 192,434 + -1.5 192,572 + BACOVA_02427 0.75 -0.1 192,577 - BACOVA_02427 0.79 -0.3 192,636 - -0.1 192,719 - -0.0 192,810 + -3.0 192,811 - +1.5 192,991 + BACOVA_02428 0.28 -1.1 193,019 + BACOVA_02428 0.31 -2.5 193,019 + BACOVA_02428 0.31 +0.5 193,054 + BACOVA_02428 0.35 +1.4
Or see this region's nucleotide sequence