Experiment: Xylan from Beechwood 2.5 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_02045 and BACOVA_02046 are separated by 137 nucleotides BACOVA_02046 and BACOVA_02047 are separated by 510 nucleotides BACOVA_02047 and BACOVA_02048 overlap by 68 nucleotides BACOVA_02048 and BACOVA_02049 are separated by 58 nucleotides
BACOVA_02045: BACOVA_02045 - TonB-linked outer membrane protein, SusC/RagA family, at 350,851 to 354,216
_02045
BACOVA_02046: BACOVA_02046 - hypothetical protein, at 354,354 to 354,488
_02046
BACOVA_02047: BACOVA_02047 - hypothetical protein, at 354,999 to 355,127
_02047
BACOVA_02048: BACOVA_02048 - hypothetical protein, at 355,060 to 355,140
_02048
BACOVA_02049: BACOVA_02049 - sugar-binding domain protein, at 355,199 to 356,317
_02049
Position (kb) 355
356 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 354.092 kb on + strand at 354.093 kb on - strand at 354.093 kb on - strand at 354.097 kb on + strand at 354.098 kb on - strand at 354.159 kb on + strand at 354.189 kb on - strand at 354.217 kb on + strand at 354.218 kb on - strand at 354.228 kb on + strand at 354.228 kb on + strand at 354.228 kb on + strand at 354.229 kb on - strand at 354.229 kb on - strand at 354.273 kb on + strand at 354.273 kb on + strand at 354.292 kb on + strand at 354.293 kb on - strand at 354.304 kb on + strand at 354.307 kb on + strand at 354.307 kb on + strand at 354.311 kb on + strand at 354.314 kb on + strand at 354.335 kb on + strand at 354.339 kb on - strand at 354.352 kb on + strand at 354.375 kb on - strand, within BACOVA_02046 at 354.404 kb on - strand, within BACOVA_02046 at 354.474 kb on + strand, within BACOVA_02046 at 354.474 kb on + strand, within BACOVA_02046 at 354.486 kb on + strand at 354.486 kb on + strand at 354.499 kb on - strand at 354.499 kb on - strand at 354.541 kb on + strand at 354.542 kb on - strand at 354.542 kb on - strand at 354.646 kb on - strand at 354.676 kb on + strand at 354.676 kb on + strand at 354.689 kb on + strand at 354.689 kb on + strand at 354.698 kb on + strand at 354.713 kb on + strand at 354.715 kb on + strand at 354.720 kb on - strand at 354.726 kb on + strand at 354.752 kb on - strand at 354.752 kb on - strand at 354.756 kb on - strand at 354.777 kb on + strand at 354.777 kb on + strand at 354.778 kb on - strand at 354.788 kb on - strand at 354.800 kb on - strand at 354.844 kb on + strand at 354.845 kb on - strand at 354.866 kb on + strand at 354.867 kb on - strand at 354.875 kb on - strand at 354.875 kb on - strand at 354.888 kb on + strand at 354.901 kb on - strand at 354.911 kb on - strand at 354.911 kb on - strand at 355.003 kb on + strand at 355.003 kb on + strand at 355.008 kb on - strand at 355.009 kb on + strand at 355.009 kb on + strand at 355.010 kb on - strand at 355.018 kb on - strand, within BACOVA_02047 at 355.020 kb on - strand, within BACOVA_02047 at 355.020 kb on - strand, within BACOVA_02047 at 355.049 kb on + strand, within BACOVA_02047 at 355.126 kb on - strand at 355.135 kb on + strand at 355.138 kb on + strand at 355.139 kb on - strand at 355.185 kb on + strand at 355.215 kb on - strand at 355.239 kb on - strand at 355.241 kb on - strand at 355.247 kb on - strand at 355.319 kb on - strand, within BACOVA_02049 at 355.356 kb on - strand, within BACOVA_02049 at 355.367 kb on + strand, within BACOVA_02049 at 355.368 kb on - strand, within BACOVA_02049 at 355.372 kb on - strand, within BACOVA_02049 at 355.381 kb on - strand, within BACOVA_02049 at 355.382 kb on + strand, within BACOVA_02049 at 355.382 kb on + strand, within BACOVA_02049 at 355.387 kb on + strand, within BACOVA_02049 at 355.411 kb on + strand, within BACOVA_02049 at 355.411 kb on + strand, within BACOVA_02049 at 355.411 kb on + strand, within BACOVA_02049 at 355.411 kb on + strand, within BACOVA_02049 at 355.412 kb on - strand, within BACOVA_02049 at 355.412 kb on - strand, within BACOVA_02049 at 355.432 kb on + strand, within BACOVA_02049 at 355.433 kb on - strand, within BACOVA_02049 at 355.442 kb on + strand, within BACOVA_02049 at 355.472 kb on - strand, within BACOVA_02049 at 355.479 kb on - strand, within BACOVA_02049 at 355.487 kb on + strand, within BACOVA_02049 at 355.504 kb on + strand, within BACOVA_02049 at 355.534 kb on + strand, within BACOVA_02049 at 355.536 kb on + strand, within BACOVA_02049 at 355.633 kb on + strand, within BACOVA_02049 at 355.634 kb on - strand, within BACOVA_02049 at 355.642 kb on + strand, within BACOVA_02049 at 355.664 kb on - strand, within BACOVA_02049 at 355.676 kb on - strand, within BACOVA_02049 at 355.678 kb on + strand, within BACOVA_02049 at 355.678 kb on + strand, within BACOVA_02049 at 355.691 kb on + strand, within BACOVA_02049 at 355.698 kb on - strand, within BACOVA_02049 at 355.714 kb on - strand, within BACOVA_02049 at 355.725 kb on + strand, within BACOVA_02049 at 355.726 kb on - strand, within BACOVA_02049 at 355.726 kb on - strand, within BACOVA_02049 at 355.726 kb on - strand, within BACOVA_02049 at 355.739 kb on + strand, within BACOVA_02049 at 355.739 kb on + strand, within BACOVA_02049 at 355.754 kb on - strand, within BACOVA_02049 at 355.795 kb on + strand, within BACOVA_02049 at 355.796 kb on - strand, within BACOVA_02049 at 355.799 kb on - strand, within BACOVA_02049 at 355.799 kb on - strand, within BACOVA_02049 at 355.801 kb on + strand, within BACOVA_02049 at 355.857 kb on - strand, within BACOVA_02049 at 355.862 kb on - strand, within BACOVA_02049 at 355.882 kb on + strand, within BACOVA_02049 at 355.883 kb on - strand, within BACOVA_02049 at 355.934 kb on - strand, within BACOVA_02049 at 355.934 kb on - strand, within BACOVA_02049 at 355.935 kb on + strand, within BACOVA_02049 at 355.936 kb on - strand, within BACOVA_02049 at 355.940 kb on - strand, within BACOVA_02049 at 355.940 kb on - strand, within BACOVA_02049 at 355.941 kb on + strand, within BACOVA_02049 at 355.942 kb on - strand, within BACOVA_02049 at 355.942 kb on - strand, within BACOVA_02049 at 355.973 kb on + strand, within BACOVA_02049 at 355.973 kb on + strand, within BACOVA_02049 at 355.973 kb on + strand, within BACOVA_02049 at 355.973 kb on + strand, within BACOVA_02049 at 355.974 kb on - strand, within BACOVA_02049 at 355.974 kb on - strand, within BACOVA_02049 at 355.974 kb on - strand, within BACOVA_02049 at 355.976 kb on - strand, within BACOVA_02049 at 355.976 kb on - strand, within BACOVA_02049 at 355.993 kb on + strand, within BACOVA_02049 at 355.997 kb on + strand, within BACOVA_02049 at 355.998 kb on - strand, within BACOVA_02049 at 355.998 kb on - strand, within BACOVA_02049 at 356.018 kb on + strand, within BACOVA_02049 at 356.018 kb on + strand, within BACOVA_02049 at 356.019 kb on - strand, within BACOVA_02049 at 356.020 kb on + strand, within BACOVA_02049 at 356.021 kb on - strand, within BACOVA_02049 at 356.023 kb on + strand, within BACOVA_02049 at 356.024 kb on - strand, within BACOVA_02049 at 356.026 kb on - strand, within BACOVA_02049 at 356.026 kb on - strand, within BACOVA_02049 at 356.026 kb on - strand, within BACOVA_02049 at 356.108 kb on - strand, within BACOVA_02049 at 356.126 kb on - strand, within BACOVA_02049
Per-strain Table
Position Strand Gene LocusTag Fraction Xylan from Beechwood 2.5 mg/mL (C) remove 354,092 + +0.5 354,093 - +0.7 354,093 - -1.4 354,097 + -1.0 354,098 - +0.3 354,159 + +0.3 354,189 - -1.3 354,217 + +0.3 354,218 - +0.1 354,228 + +0.9 354,228 + -2.3 354,228 + +0.3 354,229 - +1.8 354,229 - +0.2 354,273 + -1.0 354,273 + -1.6 354,292 + +0.4 354,293 - +0.7 354,304 + -0.0 354,307 + -0.7 354,307 + -0.8 354,311 + +0.2 354,314 + +0.6 354,335 + +0.2 354,339 - -0.5 354,352 + -0.9 354,375 - BACOVA_02046 0.16 +1.4 354,404 - BACOVA_02046 0.37 -0.6 354,474 + BACOVA_02046 0.89 +0.6 354,474 + BACOVA_02046 0.89 -0.7 354,486 + +1.4 354,486 + -0.7 354,499 - -1.8 354,499 - -1.8 354,541 + +0.8 354,542 - -0.6 354,542 - +0.7 354,646 - -0.5 354,676 + +0.9 354,676 + -0.1 354,689 + +0.6 354,689 + -0.0 354,698 + +1.3 354,713 + -0.4 354,715 + -0.4 354,720 - +0.9 354,726 + -1.5 354,752 - +1.2 354,752 - +0.8 354,756 - +0.1 354,777 + -1.2 354,777 + +1.5 354,778 - -0.1 354,788 - +1.5 354,800 - -1.6 354,844 + -1.5 354,845 - +1.7 354,866 + +0.2 354,867 - -0.6 354,875 - +0.3 354,875 - -0.3 354,888 + -0.2 354,901 - -0.4 354,911 - -0.6 354,911 - +0.3 355,003 + +0.3 355,003 + -0.2 355,008 - +0.4 355,009 + +0.1 355,009 + -0.5 355,010 - -0.1 355,018 - BACOVA_02047 0.15 +0.4 355,020 - BACOVA_02047 0.16 +0.8 355,020 - BACOVA_02047 0.16 -0.6 355,049 + BACOVA_02047 0.39 +1.7 355,126 - +0.2 355,135 + -0.4 355,138 + -0.3 355,139 - +0.1 355,185 + -2.1 355,215 - +0.5 355,239 - -1.9 355,241 - +0.3 355,247 - -0.2 355,319 - BACOVA_02049 0.11 +1.0 355,356 - BACOVA_02049 0.14 +0.6 355,367 + BACOVA_02049 0.15 +0.8 355,368 - BACOVA_02049 0.15 -0.2 355,372 - BACOVA_02049 0.15 -1.1 355,381 - BACOVA_02049 0.16 -1.9 355,382 + BACOVA_02049 0.16 +0.6 355,382 + BACOVA_02049 0.16 -1.9 355,387 + BACOVA_02049 0.17 -2.7 355,411 + BACOVA_02049 0.19 -0.9 355,411 + BACOVA_02049 0.19 -0.9 355,411 + BACOVA_02049 0.19 +2.2 355,411 + BACOVA_02049 0.19 -1.0 355,412 - BACOVA_02049 0.19 -0.0 355,412 - BACOVA_02049 0.19 +0.6 355,432 + BACOVA_02049 0.21 -1.1 355,433 - BACOVA_02049 0.21 -1.6 355,442 + BACOVA_02049 0.22 -0.4 355,472 - BACOVA_02049 0.24 -1.1 355,479 - BACOVA_02049 0.25 -0.8 355,487 + BACOVA_02049 0.26 +2.4 355,504 + BACOVA_02049 0.27 -1.7 355,534 + BACOVA_02049 0.30 -0.5 355,536 + BACOVA_02049 0.30 -2.0 355,633 + BACOVA_02049 0.39 -1.2 355,634 - BACOVA_02049 0.39 -1.0 355,642 + BACOVA_02049 0.40 -0.4 355,664 - BACOVA_02049 0.42 +1.5 355,676 - BACOVA_02049 0.43 -0.7 355,678 + BACOVA_02049 0.43 -0.8 355,678 + BACOVA_02049 0.43 -0.3 355,691 + BACOVA_02049 0.44 -1.0 355,698 - BACOVA_02049 0.45 +0.4 355,714 - BACOVA_02049 0.46 -2.5 355,725 + BACOVA_02049 0.47 -0.3 355,726 - BACOVA_02049 0.47 -0.6 355,726 - BACOVA_02049 0.47 -1.1 355,726 - BACOVA_02049 0.47 -1.2 355,739 + BACOVA_02049 0.48 +1.1 355,739 + BACOVA_02049 0.48 -1.4 355,754 - BACOVA_02049 0.50 +0.8 355,795 + BACOVA_02049 0.53 +0.6 355,796 - BACOVA_02049 0.53 -1.1 355,799 - BACOVA_02049 0.54 -1.9 355,799 - BACOVA_02049 0.54 -2.6 355,801 + BACOVA_02049 0.54 -0.3 355,857 - BACOVA_02049 0.59 +0.9 355,862 - BACOVA_02049 0.59 -1.5 355,882 + BACOVA_02049 0.61 -1.9 355,883 - BACOVA_02049 0.61 -0.3 355,934 - BACOVA_02049 0.66 +1.2 355,934 - BACOVA_02049 0.66 -0.1 355,935 + BACOVA_02049 0.66 -3.5 355,936 - BACOVA_02049 0.66 -0.7 355,940 - BACOVA_02049 0.66 -0.6 355,940 - BACOVA_02049 0.66 -1.3 355,941 + BACOVA_02049 0.66 -0.4 355,942 - BACOVA_02049 0.66 -0.6 355,942 - BACOVA_02049 0.66 +0.0 355,973 + BACOVA_02049 0.69 -0.2 355,973 + BACOVA_02049 0.69 -0.1 355,973 + BACOVA_02049 0.69 -0.4 355,973 + BACOVA_02049 0.69 +0.1 355,974 - BACOVA_02049 0.69 -0.8 355,974 - BACOVA_02049 0.69 -0.8 355,974 - BACOVA_02049 0.69 +0.9 355,976 - BACOVA_02049 0.69 -0.9 355,976 - BACOVA_02049 0.69 -0.1 355,993 + BACOVA_02049 0.71 -1.6 355,997 + BACOVA_02049 0.71 -2.6 355,998 - BACOVA_02049 0.71 +0.8 355,998 - BACOVA_02049 0.71 -0.6 356,018 + BACOVA_02049 0.73 +0.4 356,018 + BACOVA_02049 0.73 -3.5 356,019 - BACOVA_02049 0.73 -0.9 356,020 + BACOVA_02049 0.73 -2.1 356,021 - BACOVA_02049 0.73 -0.8 356,023 + BACOVA_02049 0.74 -0.8 356,024 - BACOVA_02049 0.74 -1.4 356,026 - BACOVA_02049 0.74 -1.1 356,026 - BACOVA_02049 0.74 -0.8 356,026 - BACOVA_02049 0.74 -0.4 356,108 - BACOVA_02049 0.81 -1.4 356,126 - BACOVA_02049 0.83 -2.7
Or see this region's nucleotide sequence