Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_01918

Experiment: Xylan from Beechwood 2.5 mg/mL (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_01916 and BACOVA_01917 are separated by 140 nucleotidesBACOVA_01917 and BACOVA_01918 overlap by 37 nucleotidesBACOVA_01918 and BACOVA_01919 overlap by 14 nucleotides BACOVA_01916: BACOVA_01916 - hypothetical protein, at 125,721 to 126,323 _01916 BACOVA_01917: BACOVA_01917 - hypothetical protein, at 126,464 to 127,099 _01917 BACOVA_01918: BACOVA_01918 - putative dolichyl-phosphate-mannose-protein mannosyltransferase, at 127,063 to 128,901 _01918 BACOVA_01919: BACOVA_01919 - arylsulfatase, at 128,888 to 130,867 _01919 Position (kb) 127 128 129Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 126.066 kb on + strand, within BACOVA_01916at 126.066 kb on + strand, within BACOVA_01916at 126.067 kb on - strand, within BACOVA_01916at 126.067 kb on - strand, within BACOVA_01916at 126.162 kb on + strand, within BACOVA_01916at 126.162 kb on + strand, within BACOVA_01916at 126.179 kb on + strand, within BACOVA_01916at 126.254 kb on + strand, within BACOVA_01916at 126.255 kb on - strand, within BACOVA_01916at 126.255 kb on - strand, within BACOVA_01916at 126.281 kb on - strandat 126.308 kb on + strandat 126.323 kb on + strandat 126.339 kb on - strandat 126.343 kb on + strandat 126.344 kb on - strandat 126.344 kb on - strandat 126.408 kb on + strandat 127.124 kb on + strandat 127.166 kb on + strandat 127.169 kb on + strandat 127.169 kb on + strandat 127.185 kb on + strandat 127.185 kb on + strandat 127.186 kb on - strandat 127.188 kb on + strandat 127.189 kb on - strandat 127.216 kb on + strandat 127.216 kb on + strandat 127.246 kb on - strandat 127.315 kb on + strand, within BACOVA_01918at 127.494 kb on + strand, within BACOVA_01918at 127.548 kb on + strand, within BACOVA_01918at 127.553 kb on + strand, within BACOVA_01918at 127.583 kb on - strand, within BACOVA_01918at 127.591 kb on + strand, within BACOVA_01918at 127.592 kb on - strand, within BACOVA_01918at 127.600 kb on + strand, within BACOVA_01918at 127.680 kb on + strand, within BACOVA_01918at 127.680 kb on + strand, within BACOVA_01918at 127.680 kb on + strand, within BACOVA_01918at 127.684 kb on - strand, within BACOVA_01918at 127.684 kb on - strand, within BACOVA_01918at 127.684 kb on - strand, within BACOVA_01918at 127.697 kb on + strand, within BACOVA_01918at 127.719 kb on - strand, within BACOVA_01918at 127.754 kb on + strand, within BACOVA_01918at 127.754 kb on + strand, within BACOVA_01918at 127.755 kb on - strand, within BACOVA_01918at 127.801 kb on + strand, within BACOVA_01918at 127.845 kb on - strand, within BACOVA_01918at 127.848 kb on + strand, within BACOVA_01918at 127.849 kb on - strand, within BACOVA_01918at 127.879 kb on - strand, within BACOVA_01918at 127.888 kb on + strand, within BACOVA_01918at 127.889 kb on - strand, within BACOVA_01918at 127.931 kb on + strand, within BACOVA_01918at 127.931 kb on + strand, within BACOVA_01918at 127.932 kb on - strand, within BACOVA_01918at 127.962 kb on - strand, within BACOVA_01918at 128.069 kb on + strand, within BACOVA_01918at 128.070 kb on - strand, within BACOVA_01918at 128.108 kb on - strand, within BACOVA_01918at 128.108 kb on - strand, within BACOVA_01918at 128.113 kb on - strand, within BACOVA_01918at 128.135 kb on + strand, within BACOVA_01918at 128.135 kb on + strand, within BACOVA_01918at 128.135 kb on + strand, within BACOVA_01918at 128.135 kb on + strand, within BACOVA_01918at 128.136 kb on - strand, within BACOVA_01918at 128.136 kb on - strand, within BACOVA_01918at 128.168 kb on - strand, within BACOVA_01918at 128.186 kb on + strand, within BACOVA_01918at 128.191 kb on + strand, within BACOVA_01918at 128.212 kb on - strand, within BACOVA_01918at 128.212 kb on - strand, within BACOVA_01918at 128.229 kb on - strand, within BACOVA_01918at 128.235 kb on + strand, within BACOVA_01918at 128.259 kb on - strand, within BACOVA_01918at 128.259 kb on - strand, within BACOVA_01918at 128.338 kb on - strand, within BACOVA_01918at 128.340 kb on + strand, within BACOVA_01918at 128.357 kb on + strand, within BACOVA_01918at 128.385 kb on - strand, within BACOVA_01918at 128.385 kb on - strand, within BACOVA_01918at 128.403 kb on + strand, within BACOVA_01918at 128.419 kb on + strand, within BACOVA_01918at 128.419 kb on + strand, within BACOVA_01918at 128.465 kb on + strand, within BACOVA_01918at 128.467 kb on + strand, within BACOVA_01918at 128.484 kb on + strand, within BACOVA_01918at 128.484 kb on + strand, within BACOVA_01918at 128.485 kb on - strand, within BACOVA_01918at 128.497 kb on + strand, within BACOVA_01918at 128.497 kb on + strand, within BACOVA_01918at 128.497 kb on + strand, within BACOVA_01918at 128.498 kb on - strand, within BACOVA_01918at 128.498 kb on - strand, within BACOVA_01918at 128.518 kb on + strand, within BACOVA_01918at 128.698 kb on + strand, within BACOVA_01918at 128.699 kb on - strand, within BACOVA_01918at 128.730 kb on - strandat 128.755 kb on + strandat 128.755 kb on + strandat 128.756 kb on - strandat 128.783 kb on - strandat 128.799 kb on - strandat 128.800 kb on + strandat 128.800 kb on + strandat 128.801 kb on - strandat 128.819 kb on + strandat 128.890 kb on - strandat 128.890 kb on - strandat 128.899 kb on + strandat 128.899 kb on + strandat 128.969 kb on - strandat 129.036 kb on + strandat 129.037 kb on - strandat 129.041 kb on - strandat 129.065 kb on - strandat 129.072 kb on + strandat 129.072 kb on + strandat 129.115 kb on + strand, within BACOVA_01919at 129.117 kb on + strand, within BACOVA_01919at 129.117 kb on + strand, within BACOVA_01919at 129.117 kb on + strand, within BACOVA_01919at 129.117 kb on + strand, within BACOVA_01919at 129.118 kb on - strand, within BACOVA_01919at 129.118 kb on - strand, within BACOVA_01919at 129.118 kb on - strand, within BACOVA_01919at 129.124 kb on + strand, within BACOVA_01919at 129.124 kb on + strand, within BACOVA_01919at 129.164 kb on - strand, within BACOVA_01919at 129.174 kb on + strand, within BACOVA_01919at 129.197 kb on + strand, within BACOVA_01919at 129.198 kb on - strand, within BACOVA_01919at 129.209 kb on + strand, within BACOVA_01919at 129.209 kb on + strand, within BACOVA_01919at 129.210 kb on - strand, within BACOVA_01919at 129.212 kb on - strand, within BACOVA_01919at 129.215 kb on + strand, within BACOVA_01919at 129.215 kb on + strand, within BACOVA_01919at 129.216 kb on - strand, within BACOVA_01919at 129.286 kb on + strand, within BACOVA_01919at 129.287 kb on - strand, within BACOVA_01919at 129.288 kb on + strand, within BACOVA_01919at 129.299 kb on + strand, within BACOVA_01919at 129.358 kb on + strand, within BACOVA_01919at 129.359 kb on - strand, within BACOVA_01919at 129.359 kb on - strand, within BACOVA_01919at 129.359 kb on - strand, within BACOVA_01919at 129.361 kb on + strand, within BACOVA_01919at 129.362 kb on - strand, within BACOVA_01919at 129.421 kb on - strand, within BACOVA_01919at 129.511 kb on + strand, within BACOVA_01919at 129.512 kb on - strand, within BACOVA_01919at 129.564 kb on + strand, within BACOVA_01919at 129.564 kb on + strand, within BACOVA_01919at 129.565 kb on - strand, within BACOVA_01919at 129.565 kb on - strand, within BACOVA_01919at 129.571 kb on - strand, within BACOVA_01919at 129.571 kb on - strand, within BACOVA_01919at 129.599 kb on - strand, within BACOVA_01919at 129.599 kb on - strand, within BACOVA_01919at 129.599 kb on - strand, within BACOVA_01919at 129.610 kb on + strand, within BACOVA_01919at 129.677 kb on - strand, within BACOVA_01919at 129.677 kb on - strand, within BACOVA_01919at 129.680 kb on - strand, within BACOVA_01919at 129.685 kb on - strand, within BACOVA_01919at 129.718 kb on - strand, within BACOVA_01919at 129.878 kb on - strand, within BACOVA_01919at 129.888 kb on + strand, within BACOVA_01919at 129.888 kb on + strand, within BACOVA_01919at 129.889 kb on - strand, within BACOVA_01919at 129.889 kb on - strand, within BACOVA_01919

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Per-strain Table

Position Strand Gene LocusTag Fraction Xylan from Beechwood 2.5 mg/mL (C)
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126,066 + BACOVA_01916 0.57 -0.7
126,066 + BACOVA_01916 0.57 -0.2
126,067 - BACOVA_01916 0.57 -0.1
126,067 - BACOVA_01916 0.57 -0.1
126,162 + BACOVA_01916 0.73 -1.0
126,162 + BACOVA_01916 0.73 -0.5
126,179 + BACOVA_01916 0.76 +0.5
126,254 + BACOVA_01916 0.88 -0.3
126,255 - BACOVA_01916 0.89 -0.7
126,255 - BACOVA_01916 0.89 -0.2
126,281 - -0.6
126,308 + -1.8
126,323 + +0.4
126,339 - +0.8
126,343 + +0.4
126,344 - -0.7
126,344 - -1.2
126,408 + +0.3
127,124 + -0.4
127,166 + -1.0
127,169 + -2.3
127,169 + -2.4
127,185 + -1.8
127,185 + -3.8
127,186 - -1.8
127,188 + -2.9
127,189 - -3.5
127,216 + -2.9
127,216 + -1.9
127,246 - -2.1
127,315 + BACOVA_01918 0.14 -1.8
127,494 + BACOVA_01918 0.23 -2.0
127,548 + BACOVA_01918 0.26 -2.9
127,553 + BACOVA_01918 0.27 -3.4
127,583 - BACOVA_01918 0.28 -2.2
127,591 + BACOVA_01918 0.29 -1.2
127,592 - BACOVA_01918 0.29 -2.7
127,600 + BACOVA_01918 0.29 -2.1
127,680 + BACOVA_01918 0.34 -0.7
127,680 + BACOVA_01918 0.34 -3.1
127,680 + BACOVA_01918 0.34 -4.3
127,684 - BACOVA_01918 0.34 -2.8
127,684 - BACOVA_01918 0.34 -2.3
127,684 - BACOVA_01918 0.34 -1.4
127,697 + BACOVA_01918 0.34 -2.2
127,719 - BACOVA_01918 0.36 -2.9
127,754 + BACOVA_01918 0.38 -1.7
127,754 + BACOVA_01918 0.38 -4.4
127,755 - BACOVA_01918 0.38 -4.8
127,801 + BACOVA_01918 0.40 -4.2
127,845 - BACOVA_01918 0.43 -2.6
127,848 + BACOVA_01918 0.43 -4.9
127,849 - BACOVA_01918 0.43 -2.4
127,879 - BACOVA_01918 0.44 -3.3
127,888 + BACOVA_01918 0.45 -2.8
127,889 - BACOVA_01918 0.45 -3.3
127,931 + BACOVA_01918 0.47 -1.4
127,931 + BACOVA_01918 0.47 -4.6
127,932 - BACOVA_01918 0.47 -0.4
127,962 - BACOVA_01918 0.49 -4.7
128,069 + BACOVA_01918 0.55 -0.3
128,070 - BACOVA_01918 0.55 -3.2
128,108 - BACOVA_01918 0.57 -2.0
128,108 - BACOVA_01918 0.57 -3.6
128,113 - BACOVA_01918 0.57 -3.0
128,135 + BACOVA_01918 0.58 -0.8
128,135 + BACOVA_01918 0.58 -5.2
128,135 + BACOVA_01918 0.58 -2.8
128,135 + BACOVA_01918 0.58 -2.3
128,136 - BACOVA_01918 0.58 -0.9
128,136 - BACOVA_01918 0.58 -3.6
128,168 - BACOVA_01918 0.60 -2.6
128,186 + BACOVA_01918 0.61 -1.3
128,191 + BACOVA_01918 0.61 -1.4
128,212 - BACOVA_01918 0.62 -2.2
128,212 - BACOVA_01918 0.62 -3.0
128,229 - BACOVA_01918 0.63 -4.4
128,235 + BACOVA_01918 0.64 -3.0
128,259 - BACOVA_01918 0.65 +0.2
128,259 - BACOVA_01918 0.65 -2.5
128,338 - BACOVA_01918 0.69 -4.0
128,340 + BACOVA_01918 0.69 -0.6
128,357 + BACOVA_01918 0.70 -4.6
128,385 - BACOVA_01918 0.72 -1.9
128,385 - BACOVA_01918 0.72 -2.8
128,403 + BACOVA_01918 0.73 -3.6
128,419 + BACOVA_01918 0.74 -4.0
128,419 + BACOVA_01918 0.74 -3.0
128,465 + BACOVA_01918 0.76 -1.8
128,467 + BACOVA_01918 0.76 -2.9
128,484 + BACOVA_01918 0.77 -2.7
128,484 + BACOVA_01918 0.77 -1.2
128,485 - BACOVA_01918 0.77 -3.3
128,497 + BACOVA_01918 0.78 -1.1
128,497 + BACOVA_01918 0.78 -4.0
128,497 + BACOVA_01918 0.78 -3.7
128,498 - BACOVA_01918 0.78 -2.6
128,498 - BACOVA_01918 0.78 -1.0
128,518 + BACOVA_01918 0.79 -2.8
128,698 + BACOVA_01918 0.89 -2.8
128,699 - BACOVA_01918 0.89 -3.4
128,730 - +0.9
128,755 + -2.5
128,755 + -1.2
128,756 - -3.3
128,783 - -2.4
128,799 - -3.5
128,800 + -5.3
128,800 + -2.5
128,801 - -2.2
128,819 + -0.7
128,890 - +0.8
128,890 - -1.0
128,899 + -0.4
128,899 + -0.6
128,969 - -2.0
129,036 + -1.6
129,037 - -3.4
129,041 - +0.5
129,065 - -1.0
129,072 + -1.3
129,072 + -3.3
129,115 + BACOVA_01919 0.11 -3.8
129,117 + BACOVA_01919 0.12 -1.6
129,117 + BACOVA_01919 0.12 -1.2
129,117 + BACOVA_01919 0.12 -2.2
129,117 + BACOVA_01919 0.12 -3.4
129,118 - BACOVA_01919 0.12 -1.9
129,118 - BACOVA_01919 0.12 -2.0
129,118 - BACOVA_01919 0.12 -2.2
129,124 + BACOVA_01919 0.12 -2.7
129,124 + BACOVA_01919 0.12 -3.0
129,164 - BACOVA_01919 0.14 -2.1
129,174 + BACOVA_01919 0.14 -1.1
129,197 + BACOVA_01919 0.16 -0.9
129,198 - BACOVA_01919 0.16 -4.3
129,209 + BACOVA_01919 0.16 -1.8
129,209 + BACOVA_01919 0.16 -1.7
129,210 - BACOVA_01919 0.16 -1.1
129,212 - BACOVA_01919 0.16 -1.6
129,215 + BACOVA_01919 0.17 -0.4
129,215 + BACOVA_01919 0.17 +0.8
129,216 - BACOVA_01919 0.17 -2.1
129,286 + BACOVA_01919 0.20 -3.8
129,287 - BACOVA_01919 0.20 -2.9
129,288 + BACOVA_01919 0.20 -0.7
129,299 + BACOVA_01919 0.21 -0.5
129,358 + BACOVA_01919 0.24 -0.4
129,359 - BACOVA_01919 0.24 -0.9
129,359 - BACOVA_01919 0.24 -0.9
129,359 - BACOVA_01919 0.24 -1.2
129,361 + BACOVA_01919 0.24 -1.5
129,362 - BACOVA_01919 0.24 -4.4
129,421 - BACOVA_01919 0.27 -2.0
129,511 + BACOVA_01919 0.31 -2.5
129,512 - BACOVA_01919 0.32 -0.6
129,564 + BACOVA_01919 0.34 -1.2
129,564 + BACOVA_01919 0.34 -2.2
129,565 - BACOVA_01919 0.34 -1.8
129,565 - BACOVA_01919 0.34 +0.9
129,571 - BACOVA_01919 0.34 -3.5
129,571 - BACOVA_01919 0.34 -1.4
129,599 - BACOVA_01919 0.36 -3.6
129,599 - BACOVA_01919 0.36 -2.7
129,599 - BACOVA_01919 0.36 -1.7
129,610 + BACOVA_01919 0.36 -1.4
129,677 - BACOVA_01919 0.40 -2.5
129,677 - BACOVA_01919 0.40 -3.9
129,680 - BACOVA_01919 0.40 -1.5
129,685 - BACOVA_01919 0.40 -0.2
129,718 - BACOVA_01919 0.42 -1.3
129,878 - BACOVA_01919 0.50 -1.2
129,888 + BACOVA_01919 0.51 -3.1
129,888 + BACOVA_01919 0.51 -0.5
129,889 - BACOVA_01919 0.51 -0.8
129,889 - BACOVA_01919 0.51 -2.9

Or see this region's nucleotide sequence