Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_01761

Experiment: Xylan from Beechwood 2.5 mg/mL (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_01758 and BACOVA_01759 are separated by 21 nucleotidesBACOVA_01759 and BACOVA_01760 are separated by 3 nucleotidesBACOVA_01760 and BACOVA_01761 are separated by 32 nucleotidesBACOVA_01761 and BACOVA_01762 are separated by 200 nucleotidesBACOVA_01762 and BACOVA_01763 are separated by 28 nucleotides BACOVA_01758: BACOVA_01758 - putative toxin-antitoxin system, antitoxin component, at 182,609 to 183,007 _01758 BACOVA_01759: BACOVA_01759 - hypothetical protein, at 183,029 to 183,286 _01759 BACOVA_01760: BACOVA_01760 - hypothetical protein, at 183,290 to 183,652 _01760 BACOVA_01761: BACOVA_01761 - hypothetical protein, at 183,685 to 183,894 _01761 BACOVA_01762: BACOVA_01762 - hypothetical protein, at 184,095 to 184,865 _01762 BACOVA_01763: BACOVA_01763 - hypothetical protein, at 184,894 to 185,475 _01763 Position (kb) 183 184Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 182.715 kb on + strand, within BACOVA_01758at 182.715 kb on + strand, within BACOVA_01758at 182.725 kb on + strand, within BACOVA_01758at 182.733 kb on - strand, within BACOVA_01758at 182.735 kb on + strand, within BACOVA_01758at 182.735 kb on + strand, within BACOVA_01758at 182.735 kb on + strand, within BACOVA_01758at 182.750 kb on - strand, within BACOVA_01758at 182.773 kb on + strand, within BACOVA_01758at 182.781 kb on + strand, within BACOVA_01758at 182.806 kb on + strand, within BACOVA_01758at 182.806 kb on + strand, within BACOVA_01758at 182.807 kb on - strand, within BACOVA_01758at 182.906 kb on + strand, within BACOVA_01758at 182.906 kb on + strand, within BACOVA_01758at 182.907 kb on - strand, within BACOVA_01758at 182.907 kb on - strand, within BACOVA_01758at 182.907 kb on - strand, within BACOVA_01758at 182.914 kb on + strand, within BACOVA_01758at 182.914 kb on + strand, within BACOVA_01758at 182.914 kb on + strand, within BACOVA_01758at 182.918 kb on + strand, within BACOVA_01758at 182.918 kb on + strand, within BACOVA_01758at 182.918 kb on + strand, within BACOVA_01758at 182.950 kb on + strand, within BACOVA_01758at 183.001 kb on + strandat 183.006 kb on - strandat 183.026 kb on - strandat 183.099 kb on - strand, within BACOVA_01759at 183.185 kb on - strand, within BACOVA_01759at 183.185 kb on - strand, within BACOVA_01759at 183.221 kb on + strand, within BACOVA_01759at 183.222 kb on - strand, within BACOVA_01759at 183.255 kb on - strand, within BACOVA_01759at 183.255 kb on - strand, within BACOVA_01759at 183.404 kb on + strand, within BACOVA_01760at 183.404 kb on + strand, within BACOVA_01760at 183.404 kb on + strand, within BACOVA_01760at 183.449 kb on + strand, within BACOVA_01760at 183.450 kb on - strand, within BACOVA_01760at 183.450 kb on - strand, within BACOVA_01760at 183.454 kb on - strand, within BACOVA_01760at 183.454 kb on - strand, within BACOVA_01760at 183.474 kb on + strand, within BACOVA_01760at 183.502 kb on + strand, within BACOVA_01760at 183.506 kb on + strand, within BACOVA_01760at 183.509 kb on + strand, within BACOVA_01760at 183.509 kb on + strand, within BACOVA_01760at 183.509 kb on + strand, within BACOVA_01760at 183.509 kb on + strand, within BACOVA_01760at 183.510 kb on - strand, within BACOVA_01760at 183.518 kb on - strand, within BACOVA_01760at 183.521 kb on + strand, within BACOVA_01760at 183.542 kb on + strand, within BACOVA_01760at 183.543 kb on - strand, within BACOVA_01760at 183.569 kb on - strand, within BACOVA_01760at 183.592 kb on - strand, within BACOVA_01760at 183.631 kb on + strandat 183.632 kb on - strandat 183.687 kb on - strandat 183.827 kb on - strand, within BACOVA_01761at 183.831 kb on + strand, within BACOVA_01761at 183.832 kb on - strand, within BACOVA_01761at 183.875 kb on - strandat 183.894 kb on + strandat 183.899 kb on + strandat 183.900 kb on - strandat 183.900 kb on - strandat 183.922 kb on + strandat 183.922 kb on + strandat 183.932 kb on - strandat 183.987 kb on - strandat 184.012 kb on + strandat 184.013 kb on - strandat 184.023 kb on - strandat 184.060 kb on + strandat 184.060 kb on + strandat 184.061 kb on - strandat 184.093 kb on + strandat 184.115 kb on + strandat 184.116 kb on - strandat 184.260 kb on + strand, within BACOVA_01762at 184.262 kb on + strand, within BACOVA_01762at 184.262 kb on + strand, within BACOVA_01762at 184.263 kb on - strand, within BACOVA_01762at 184.398 kb on - strand, within BACOVA_01762at 184.500 kb on - strand, within BACOVA_01762at 184.502 kb on + strand, within BACOVA_01762at 184.502 kb on + strand, within BACOVA_01762at 184.502 kb on + strand, within BACOVA_01762at 184.502 kb on + strand, within BACOVA_01762at 184.505 kb on + strand, within BACOVA_01762at 184.505 kb on + strand, within BACOVA_01762at 184.506 kb on - strand, within BACOVA_01762at 184.510 kb on + strand, within BACOVA_01762at 184.554 kb on + strand, within BACOVA_01762at 184.555 kb on - strand, within BACOVA_01762at 184.555 kb on - strand, within BACOVA_01762at 184.637 kb on + strand, within BACOVA_01762at 184.638 kb on - strand, within BACOVA_01762at 184.692 kb on - strand, within BACOVA_01762at 184.818 kb on - strandat 184.822 kb on - strandat 184.822 kb on - strandat 184.839 kb on - strandat 184.846 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Xylan from Beechwood 2.5 mg/mL (C)
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182,715 + BACOVA_01758 0.27 +1.2
182,715 + BACOVA_01758 0.27 -0.1
182,725 + BACOVA_01758 0.29 -0.0
182,733 - BACOVA_01758 0.31 -1.8
182,735 + BACOVA_01758 0.32 +0.6
182,735 + BACOVA_01758 0.32 +0.1
182,735 + BACOVA_01758 0.32 -0.2
182,750 - BACOVA_01758 0.35 +0.7
182,773 + BACOVA_01758 0.41 +0.8
182,781 + BACOVA_01758 0.43 -0.6
182,806 + BACOVA_01758 0.49 -0.2
182,806 + BACOVA_01758 0.49 -0.4
182,807 - BACOVA_01758 0.50 +0.4
182,906 + BACOVA_01758 0.74 -0.5
182,906 + BACOVA_01758 0.74 +1.2
182,907 - BACOVA_01758 0.75 -2.1
182,907 - BACOVA_01758 0.75 -1.4
182,907 - BACOVA_01758 0.75 -0.1
182,914 + BACOVA_01758 0.76 +0.2
182,914 + BACOVA_01758 0.76 +0.3
182,914 + BACOVA_01758 0.76 +0.7
182,918 + BACOVA_01758 0.77 +1.4
182,918 + BACOVA_01758 0.77 +0.3
182,918 + BACOVA_01758 0.77 +0.3
182,950 + BACOVA_01758 0.85 +0.2
183,001 + -1.7
183,006 - -0.0
183,026 - +0.2
183,099 - BACOVA_01759 0.27 -0.0
183,185 - BACOVA_01759 0.60 +0.5
183,185 - BACOVA_01759 0.60 -0.2
183,221 + BACOVA_01759 0.74 -2.8
183,222 - BACOVA_01759 0.75 -2.4
183,255 - BACOVA_01759 0.88 -0.5
183,255 - BACOVA_01759 0.88 -1.0
183,404 + BACOVA_01760 0.31 +1.0
183,404 + BACOVA_01760 0.31 -0.4
183,404 + BACOVA_01760 0.31 +0.2
183,449 + BACOVA_01760 0.44 -0.1
183,450 - BACOVA_01760 0.44 +1.5
183,450 - BACOVA_01760 0.44 +0.2
183,454 - BACOVA_01760 0.45 +0.4
183,454 - BACOVA_01760 0.45 -1.0
183,474 + BACOVA_01760 0.51 -1.0
183,502 + BACOVA_01760 0.58 -0.9
183,506 + BACOVA_01760 0.60 -0.2
183,509 + BACOVA_01760 0.60 +1.1
183,509 + BACOVA_01760 0.60 +1.5
183,509 + BACOVA_01760 0.60 -0.1
183,509 + BACOVA_01760 0.60 -1.6
183,510 - BACOVA_01760 0.61 +1.5
183,518 - BACOVA_01760 0.63 -0.0
183,521 + BACOVA_01760 0.64 +1.2
183,542 + BACOVA_01760 0.69 -1.2
183,543 - BACOVA_01760 0.70 +0.3
183,569 - BACOVA_01760 0.77 +1.0
183,592 - BACOVA_01760 0.83 -0.4
183,631 + -0.3
183,632 - -0.4
183,687 - -1.0
183,827 - BACOVA_01761 0.68 -0.2
183,831 + BACOVA_01761 0.70 +1.6
183,832 - BACOVA_01761 0.70 +0.2
183,875 - +0.8
183,894 + -0.8
183,899 + +1.1
183,900 - -0.5
183,900 - -0.3
183,922 + -0.5
183,922 + +0.5
183,932 - +0.6
183,987 - +0.8
184,012 + +2.3
184,013 - -1.8
184,023 - +0.6
184,060 + +0.3
184,060 + -0.3
184,061 - -1.0
184,093 + -0.0
184,115 + -1.2
184,116 - +1.3
184,260 + BACOVA_01762 0.21 -1.4
184,262 + BACOVA_01762 0.22 -1.5
184,262 + BACOVA_01762 0.22 -0.5
184,263 - BACOVA_01762 0.22 +1.3
184,398 - BACOVA_01762 0.39 -0.9
184,500 - BACOVA_01762 0.53 +3.0
184,502 + BACOVA_01762 0.53 +1.1
184,502 + BACOVA_01762 0.53 -1.5
184,502 + BACOVA_01762 0.53 +0.0
184,502 + BACOVA_01762 0.53 -1.6
184,505 + BACOVA_01762 0.53 +0.4
184,505 + BACOVA_01762 0.53 +0.7
184,506 - BACOVA_01762 0.53 +0.6
184,510 + BACOVA_01762 0.54 +1.0
184,554 + BACOVA_01762 0.60 +1.0
184,555 - BACOVA_01762 0.60 -0.7
184,555 - BACOVA_01762 0.60 -1.4
184,637 + BACOVA_01762 0.70 -0.5
184,638 - BACOVA_01762 0.70 -0.0
184,692 - BACOVA_01762 0.77 -1.3
184,818 - -1.2
184,822 - +0.6
184,822 - +0.5
184,839 - +0.4
184,846 - -2.3

Or see this region's nucleotide sequence