Strain Fitness in Escherichia coli HS(pFamp)R (ATCC 700891) around OHPLBJKB_04421

Experiment: lim MOI10

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOHPLBJKB_04419 and OHPLBJKB_04420 overlap by 4 nucleotidesOHPLBJKB_04420 and OHPLBJKB_04421 are separated by 54 nucleotidesOHPLBJKB_04421 and OHPLBJKB_04422 are separated by 65 nucleotidesOHPLBJKB_04422 and OHPLBJKB_04423 are separated by 56 nucleotides OHPLBJKB_04419: OHPLBJKB_04419 - hypothetical protein, at 71,406 to 72,125 _04419 OHPLBJKB_04420: OHPLBJKB_04420 - Protein PsiB, at 72,122 to 72,556 _04420 OHPLBJKB_04421: OHPLBJKB_04421 - Nucleoid occlusion protein, at 72,611 to 74,569 _04421 OHPLBJKB_04422: OHPLBJKB_04422 - hypothetical protein, at 74,635 to 74,868 _04422 OHPLBJKB_04423: OHPLBJKB_04423 - Plasmid-derived single-stranded DNA-binding protein, at 74,925 to 75,464 _04423 Position (kb) 72 73 74 75Strain fitness (log2 ratio) -2 -1 0 1 2at 71.743 kb on + strand, within OHPLBJKB_04419at 71.743 kb on + strand, within OHPLBJKB_04419at 71.744 kb on - strand, within OHPLBJKB_04419at 71.887 kb on + strand, within OHPLBJKB_04419at 71.887 kb on + strand, within OHPLBJKB_04419at 71.888 kb on - strand, within OHPLBJKB_04419at 71.888 kb on - strand, within OHPLBJKB_04419at 71.888 kb on - strand, within OHPLBJKB_04419at 72.117 kb on + strandat 72.117 kb on + strandat 72.118 kb on - strandat 72.118 kb on - strandat 72.125 kb on + strandat 72.125 kb on + strandat 72.126 kb on - strandat 72.126 kb on - strandat 72.152 kb on - strandat 72.184 kb on + strand, within OHPLBJKB_04420at 72.504 kb on + strand, within OHPLBJKB_04420at 72.505 kb on - strand, within OHPLBJKB_04420at 72.505 kb on - strand, within OHPLBJKB_04420at 72.527 kb on + strandat 72.528 kb on - strandat 72.528 kb on - strandat 72.530 kb on + strandat 72.530 kb on + strandat 72.530 kb on + strandat 72.531 kb on - strandat 72.531 kb on - strandat 72.531 kb on - strandat 72.531 kb on - strandat 72.562 kb on + strandat 72.974 kb on + strand, within OHPLBJKB_04421at 73.129 kb on + strand, within OHPLBJKB_04421at 73.129 kb on + strand, within OHPLBJKB_04421at 73.400 kb on - strand, within OHPLBJKB_04421at 73.614 kb on + strand, within OHPLBJKB_04421at 73.755 kb on + strand, within OHPLBJKB_04421at 73.756 kb on - strand, within OHPLBJKB_04421at 73.756 kb on - strand, within OHPLBJKB_04421at 73.834 kb on + strand, within OHPLBJKB_04421at 73.835 kb on - strand, within OHPLBJKB_04421at 73.835 kb on - strand, within OHPLBJKB_04421at 74.437 kb on + strandat 74.437 kb on + strandat 74.437 kb on + strandat 74.551 kb on + strandat 74.551 kb on + strandat 74.552 kb on - strandat 74.569 kb on + strandat 74.569 kb on + strandat 74.570 kb on - strandat 74.570 kb on - strandat 74.570 kb on - strandat 74.570 kb on - strandat 74.573 kb on + strandat 74.573 kb on + strandat 74.573 kb on + strandat 74.573 kb on + strandat 74.573 kb on + strandat 74.573 kb on + strandat 74.573 kb on + strandat 74.573 kb on + strandat 74.574 kb on - strandat 74.574 kb on - strandat 74.574 kb on - strandat 74.574 kb on - strandat 74.576 kb on + strandat 74.576 kb on + strandat 74.576 kb on + strandat 74.577 kb on - strandat 74.594 kb on + strandat 74.595 kb on - strandat 74.637 kb on - strandat 74.640 kb on + strandat 74.640 kb on + strandat 74.641 kb on - strandat 74.641 kb on - strandat 74.641 kb on - strandat 74.641 kb on - strandat 74.641 kb on - strandat 74.707 kb on - strand, within OHPLBJKB_04422at 74.727 kb on + strand, within OHPLBJKB_04422at 74.727 kb on + strand, within OHPLBJKB_04422at 74.848 kb on + strandat 74.848 kb on + strandat 74.849 kb on - strandat 75.002 kb on + strand, within OHPLBJKB_04423at 75.002 kb on + strand, within OHPLBJKB_04423at 75.002 kb on + strand, within OHPLBJKB_04423at 75.003 kb on - strand, within OHPLBJKB_04423at 75.126 kb on + strand, within OHPLBJKB_04423at 75.126 kb on + strand, within OHPLBJKB_04423at 75.127 kb on - strand, within OHPLBJKB_04423at 75.155 kb on + strand, within OHPLBJKB_04423at 75.229 kb on + strand, within OHPLBJKB_04423at 75.230 kb on - strand, within OHPLBJKB_04423at 75.397 kb on + strand, within OHPLBJKB_04423at 75.398 kb on - strand, within OHPLBJKB_04423at 75.398 kb on - strand, within OHPLBJKB_04423at 75.429 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction lim MOI10
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71,743 + OHPLBJKB_04419 0.47 +0.0
71,743 + OHPLBJKB_04419 0.47 -0.9
71,744 - OHPLBJKB_04419 0.47 -1.4
71,887 + OHPLBJKB_04419 0.67 +0.4
71,887 + OHPLBJKB_04419 0.67 +1.2
71,888 - OHPLBJKB_04419 0.67 +1.4
71,888 - OHPLBJKB_04419 0.67 +0.2
71,888 - OHPLBJKB_04419 0.67 -0.9
72,117 + -1.7
72,117 + +0.4
72,118 - -0.0
72,118 - +1.4
72,125 + +1.0
72,125 + +1.4
72,126 - +0.6
72,126 - -0.1
72,152 - +0.0
72,184 + OHPLBJKB_04420 0.14 +1.0
72,504 + OHPLBJKB_04420 0.88 -0.6
72,505 - OHPLBJKB_04420 0.88 +0.4
72,505 - OHPLBJKB_04420 0.88 -0.1
72,527 + +0.4
72,528 - -0.1
72,528 - -0.6
72,530 + +1.6
72,530 + +0.6
72,530 + +1.4
72,531 - +1.8
72,531 - +1.2
72,531 - -0.6
72,531 - +1.2
72,562 + -0.4
72,974 + OHPLBJKB_04421 0.19 -0.9
73,129 + OHPLBJKB_04421 0.26 +1.8
73,129 + OHPLBJKB_04421 0.26 -0.3
73,400 - OHPLBJKB_04421 0.40 +1.4
73,614 + OHPLBJKB_04421 0.51 +0.9
73,755 + OHPLBJKB_04421 0.58 +1.0
73,756 - OHPLBJKB_04421 0.58 +1.2
73,756 - OHPLBJKB_04421 0.58 +0.4
73,834 + OHPLBJKB_04421 0.62 +1.2
73,835 - OHPLBJKB_04421 0.62 +0.7
73,835 - OHPLBJKB_04421 0.62 -1.0
74,437 + +0.1
74,437 + +0.2
74,437 + +1.9
74,551 + +1.8
74,551 + -0.6
74,552 - +0.9
74,569 + -1.1
74,569 + -0.6
74,570 - -1.1
74,570 - +0.0
74,570 - -0.7
74,570 - +0.1
74,573 + -0.1
74,573 + +0.5
74,573 + +1.2
74,573 + -1.0
74,573 + -0.6
74,573 + +0.2
74,573 + +0.8
74,573 + -0.0
74,574 - -0.4
74,574 - +0.4
74,574 - -0.1
74,574 - -0.4
74,576 + -0.1
74,576 + +0.1
74,576 + +0.9
74,577 - +0.3
74,594 + +0.7
74,595 - -0.4
74,637 - +0.3
74,640 + +0.4
74,640 + -0.7
74,641 - +0.4
74,641 - -2.4
74,641 - -1.2
74,641 - -2.6
74,641 - -0.0
74,707 - OHPLBJKB_04422 0.31 -0.9
74,727 + OHPLBJKB_04422 0.39 +0.1
74,727 + OHPLBJKB_04422 0.39 -1.4
74,848 + +0.6
74,848 + -1.1
74,849 - +0.1
75,002 + OHPLBJKB_04423 0.14 +0.5
75,002 + OHPLBJKB_04423 0.14 +1.6
75,002 + OHPLBJKB_04423 0.14 -0.1
75,003 - OHPLBJKB_04423 0.14 -0.6
75,126 + OHPLBJKB_04423 0.37 -0.6
75,126 + OHPLBJKB_04423 0.37 -0.1
75,127 - OHPLBJKB_04423 0.37 -1.1
75,155 + OHPLBJKB_04423 0.43 +0.3
75,229 + OHPLBJKB_04423 0.56 -1.3
75,230 - OHPLBJKB_04423 0.56 +0.6
75,397 + OHPLBJKB_04423 0.87 -0.9
75,398 - OHPLBJKB_04423 0.88 +1.2
75,398 - OHPLBJKB_04423 0.88 -1.1
75,429 + +0.3

Or see this region's nucleotide sequence