Experiment: lim MOI10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt OHPLBJKB_00799 and OHPLBJKB_00800 are separated by 203 nucleotides OHPLBJKB_00800 and OHPLBJKB_00801 are separated by 141 nucleotides OHPLBJKB_00801 and OHPLBJKB_00802 are separated by 55 nucleotides
OHPLBJKB_00799: OHPLBJKB_00799 - Methylmalonyl-CoA mutase, at 820,396 to 822,540
_00799
OHPLBJKB_00800: OHPLBJKB_00800 - HTH-type transcriptional regulator ArgP, at 822,744 to 823,637
_00800
OHPLBJKB_00801: OHPLBJKB_00801 - hypothetical protein, at 823,779 to 824,009
_00801
OHPLBJKB_00802: OHPLBJKB_00802 - Ribose-5-phosphate isomerase A, at 824,065 to 824,724
_00802
Position (kb) 822
823
824 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 821.777 kb on + strand, within OHPLBJKB_00799 at 821.778 kb on - strand, within OHPLBJKB_00799 at 821.778 kb on - strand, within OHPLBJKB_00799 at 821.778 kb on - strand, within OHPLBJKB_00799 at 821.778 kb on - strand, within OHPLBJKB_00799 at 821.778 kb on - strand, within OHPLBJKB_00799 at 821.778 kb on - strand, within OHPLBJKB_00799 at 821.778 kb on - strand, within OHPLBJKB_00799 at 821.799 kb on + strand, within OHPLBJKB_00799 at 821.799 kb on + strand, within OHPLBJKB_00799 at 821.800 kb on - strand, within OHPLBJKB_00799 at 821.856 kb on + strand, within OHPLBJKB_00799 at 821.865 kb on + strand, within OHPLBJKB_00799 at 821.865 kb on + strand, within OHPLBJKB_00799 at 821.868 kb on + strand, within OHPLBJKB_00799 at 821.868 kb on + strand, within OHPLBJKB_00799 at 821.868 kb on + strand, within OHPLBJKB_00799 at 821.868 kb on + strand, within OHPLBJKB_00799 at 821.869 kb on - strand, within OHPLBJKB_00799 at 821.943 kb on + strand, within OHPLBJKB_00799 at 821.943 kb on + strand, within OHPLBJKB_00799 at 821.943 kb on + strand, within OHPLBJKB_00799 at 821.944 kb on - strand, within OHPLBJKB_00799 at 821.944 kb on - strand, within OHPLBJKB_00799 at 821.944 kb on - strand, within OHPLBJKB_00799 at 821.944 kb on - strand, within OHPLBJKB_00799 at 821.944 kb on - strand, within OHPLBJKB_00799 at 821.944 kb on - strand, within OHPLBJKB_00799 at 821.945 kb on + strand, within OHPLBJKB_00799 at 821.945 kb on + strand, within OHPLBJKB_00799 at 821.945 kb on + strand, within OHPLBJKB_00799 at 821.945 kb on + strand, within OHPLBJKB_00799 at 821.945 kb on + strand, within OHPLBJKB_00799 at 821.945 kb on + strand, within OHPLBJKB_00799 at 821.945 kb on + strand, within OHPLBJKB_00799 at 821.946 kb on - strand, within OHPLBJKB_00799 at 821.946 kb on - strand, within OHPLBJKB_00799 at 821.946 kb on - strand, within OHPLBJKB_00799 at 821.946 kb on - strand, within OHPLBJKB_00799 at 821.946 kb on - strand, within OHPLBJKB_00799 at 821.963 kb on + strand, within OHPLBJKB_00799 at 821.963 kb on + strand, within OHPLBJKB_00799 at 821.963 kb on + strand, within OHPLBJKB_00799 at 821.976 kb on + strand, within OHPLBJKB_00799 at 822.003 kb on + strand, within OHPLBJKB_00799 at 822.013 kb on - strand, within OHPLBJKB_00799 at 822.013 kb on - strand, within OHPLBJKB_00799 at 822.013 kb on - strand, within OHPLBJKB_00799 at 822.041 kb on + strand, within OHPLBJKB_00799 at 822.041 kb on + strand, within OHPLBJKB_00799 at 822.041 kb on + strand, within OHPLBJKB_00799 at 822.041 kb on + strand, within OHPLBJKB_00799 at 822.041 kb on + strand, within OHPLBJKB_00799 at 822.042 kb on - strand, within OHPLBJKB_00799 at 822.200 kb on + strand, within OHPLBJKB_00799 at 822.308 kb on + strand, within OHPLBJKB_00799 at 822.309 kb on - strand, within OHPLBJKB_00799 at 822.309 kb on - strand, within OHPLBJKB_00799 at 822.338 kb on + strand at 822.338 kb on + strand at 822.338 kb on + strand at 822.338 kb on + strand at 822.338 kb on + strand at 822.338 kb on + strand at 822.338 kb on + strand at 822.338 kb on + strand at 822.338 kb on + strand at 822.338 kb on + strand at 822.338 kb on + strand at 822.338 kb on + strand at 822.338 kb on + strand at 822.338 kb on + strand at 822.338 kb on + strand at 822.338 kb on + strand at 822.338 kb on + strand at 822.338 kb on + strand at 822.339 kb on - strand at 822.339 kb on - strand at 822.339 kb on - strand at 822.339 kb on - strand at 822.339 kb on - strand at 822.339 kb on - strand at 822.339 kb on - strand at 822.339 kb on - strand at 822.339 kb on - strand at 822.339 kb on - strand at 822.339 kb on - strand at 822.339 kb on - strand at 822.339 kb on - strand at 822.339 kb on - strand at 822.339 kb on - strand at 822.339 kb on - strand at 822.339 kb on - strand at 822.339 kb on - strand at 822.342 kb on + strand at 822.366 kb on - strand at 822.425 kb on + strand at 822.425 kb on + strand at 822.426 kb on - strand at 822.426 kb on - strand at 822.534 kb on + strand at 822.541 kb on + strand at 822.541 kb on + strand at 822.542 kb on - strand at 822.574 kb on + strand at 822.598 kb on + strand at 822.599 kb on - strand at 822.599 kb on - strand at 822.689 kb on - strand at 822.716 kb on + strand at 822.716 kb on + strand at 822.717 kb on - strand at 822.717 kb on - strand at 822.717 kb on - strand at 822.724 kb on - strand at 822.734 kb on - strand at 822.746 kb on - strand at 822.746 kb on - strand at 822.772 kb on + strand at 822.798 kb on - strand at 822.835 kb on + strand, within OHPLBJKB_00800 at 822.855 kb on + strand, within OHPLBJKB_00800 at 822.923 kb on + strand, within OHPLBJKB_00800 at 822.923 kb on + strand, within OHPLBJKB_00800 at 822.924 kb on - strand, within OHPLBJKB_00800 at 822.924 kb on - strand, within OHPLBJKB_00800 at 822.924 kb on - strand, within OHPLBJKB_00800 at 822.924 kb on - strand, within OHPLBJKB_00800 at 822.974 kb on + strand, within OHPLBJKB_00800 at 823.112 kb on - strand, within OHPLBJKB_00800 at 823.147 kb on + strand, within OHPLBJKB_00800 at 823.167 kb on - strand, within OHPLBJKB_00800 at 823.202 kb on + strand, within OHPLBJKB_00800 at 823.203 kb on - strand, within OHPLBJKB_00800 at 823.203 kb on - strand, within OHPLBJKB_00800 at 823.263 kb on + strand, within OHPLBJKB_00800 at 823.264 kb on - strand, within OHPLBJKB_00800 at 823.505 kb on + strand, within OHPLBJKB_00800 at 823.506 kb on - strand, within OHPLBJKB_00800 at 823.506 kb on - strand, within OHPLBJKB_00800 at 823.506 kb on - strand, within OHPLBJKB_00800 at 823.520 kb on + strand, within OHPLBJKB_00800 at 823.520 kb on + strand, within OHPLBJKB_00800 at 823.520 kb on + strand, within OHPLBJKB_00800 at 823.591 kb on - strand at 823.611 kb on + strand at 823.612 kb on - strand at 823.622 kb on - strand at 823.622 kb on - strand at 823.622 kb on - strand at 823.657 kb on + strand at 823.657 kb on + strand at 823.657 kb on + strand at 823.658 kb on - strand at 823.658 kb on - strand at 823.676 kb on + strand at 823.676 kb on + strand at 823.677 kb on - strand at 823.703 kb on + strand at 823.703 kb on + strand at 823.704 kb on - strand at 823.704 kb on - strand at 823.704 kb on - strand at 823.705 kb on + strand at 823.705 kb on + strand at 823.706 kb on - strand at 823.706 kb on - strand at 823.706 kb on - strand at 823.734 kb on - strand at 823.734 kb on - strand at 823.850 kb on + strand, within OHPLBJKB_00801 at 823.920 kb on + strand, within OHPLBJKB_00801 at 823.920 kb on + strand, within OHPLBJKB_00801 at 823.920 kb on + strand, within OHPLBJKB_00801 at 823.920 kb on + strand, within OHPLBJKB_00801 at 823.921 kb on - strand, within OHPLBJKB_00801 at 823.921 kb on - strand, within OHPLBJKB_00801 at 823.921 kb on - strand, within OHPLBJKB_00801 at 823.921 kb on - strand, within OHPLBJKB_00801 at 823.927 kb on + strand, within OHPLBJKB_00801 at 823.928 kb on - strand, within OHPLBJKB_00801 at 823.965 kb on + strand, within OHPLBJKB_00801 at 824.025 kb on + strand at 824.026 kb on - strand at 824.026 kb on - strand at 824.026 kb on - strand at 824.026 kb on - strand at 824.027 kb on + strand at 824.027 kb on + strand at 824.027 kb on + strand at 824.027 kb on + strand at 824.027 kb on + strand at 824.027 kb on + strand at 824.027 kb on + strand at 824.027 kb on + strand at 824.027 kb on + strand at 824.027 kb on + strand at 824.027 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction lim MOI10 remove 821,777 + OHPLBJKB_00799 0.64 -1.4 821,778 - OHPLBJKB_00799 0.64 +0.8 821,778 - OHPLBJKB_00799 0.64 -0.4 821,778 - OHPLBJKB_00799 0.64 -1.0 821,778 - OHPLBJKB_00799 0.64 -0.5 821,778 - OHPLBJKB_00799 0.64 -0.8 821,778 - OHPLBJKB_00799 0.64 -0.4 821,778 - OHPLBJKB_00799 0.64 +0.0 821,799 + OHPLBJKB_00799 0.65 +1.2 821,799 + OHPLBJKB_00799 0.65 -0.5 821,800 - OHPLBJKB_00799 0.65 +1.3 821,856 + OHPLBJKB_00799 0.68 -0.0 821,865 + OHPLBJKB_00799 0.68 -1.3 821,865 + OHPLBJKB_00799 0.68 +0.6 821,868 + OHPLBJKB_00799 0.69 +1.1 821,868 + OHPLBJKB_00799 0.69 +0.0 821,868 + OHPLBJKB_00799 0.69 +0.0 821,868 + OHPLBJKB_00799 0.69 -0.4 821,869 - OHPLBJKB_00799 0.69 -0.5 821,943 + OHPLBJKB_00799 0.72 +0.1 821,943 + OHPLBJKB_00799 0.72 -0.2 821,943 + OHPLBJKB_00799 0.72 -0.4 821,944 - OHPLBJKB_00799 0.72 +0.1 821,944 - OHPLBJKB_00799 0.72 -1.0 821,944 - OHPLBJKB_00799 0.72 +0.9 821,944 - OHPLBJKB_00799 0.72 -0.2 821,944 - OHPLBJKB_00799 0.72 -1.0 821,944 - OHPLBJKB_00799 0.72 +0.4 821,945 + OHPLBJKB_00799 0.72 -0.7 821,945 + OHPLBJKB_00799 0.72 -0.4 821,945 + OHPLBJKB_00799 0.72 +0.1 821,945 + OHPLBJKB_00799 0.72 -0.5 821,945 + OHPLBJKB_00799 0.72 +0.1 821,945 + OHPLBJKB_00799 0.72 +0.1 821,945 + OHPLBJKB_00799 0.72 +0.0 821,946 - OHPLBJKB_00799 0.72 +0.1 821,946 - OHPLBJKB_00799 0.72 +0.2 821,946 - OHPLBJKB_00799 0.72 +0.7 821,946 - OHPLBJKB_00799 0.72 -0.0 821,946 - OHPLBJKB_00799 0.72 +0.0 821,963 + OHPLBJKB_00799 0.73 -0.6 821,963 + OHPLBJKB_00799 0.73 -1.1 821,963 + OHPLBJKB_00799 0.73 -1.2 821,976 + OHPLBJKB_00799 0.74 +0.7 822,003 + OHPLBJKB_00799 0.75 -1.2 822,013 - OHPLBJKB_00799 0.75 -0.0 822,013 - OHPLBJKB_00799 0.75 +0.6 822,013 - OHPLBJKB_00799 0.75 +0.9 822,041 + OHPLBJKB_00799 0.77 +0.3 822,041 + OHPLBJKB_00799 0.77 +0.5 822,041 + OHPLBJKB_00799 0.77 -0.0 822,041 + OHPLBJKB_00799 0.77 -0.1 822,041 + OHPLBJKB_00799 0.77 -0.4 822,042 - OHPLBJKB_00799 0.77 +0.1 822,200 + OHPLBJKB_00799 0.84 -0.3 822,308 + OHPLBJKB_00799 0.89 -0.1 822,309 - OHPLBJKB_00799 0.89 -0.7 822,309 - OHPLBJKB_00799 0.89 +0.0 822,338 + -1.4 822,338 + -1.3 822,338 + -0.1 822,338 + +0.1 822,338 + +1.3 822,338 + +0.3 822,338 + -0.1 822,338 + +0.6 822,338 + -1.8 822,338 + -0.2 822,338 + +0.6 822,338 + +0.4 822,338 + -1.0 822,338 + -0.4 822,338 + +0.2 822,338 + +0.7 822,338 + -1.2 822,338 + +0.4 822,339 - -0.4 822,339 - +0.2 822,339 - -0.1 822,339 - +0.2 822,339 - +0.3 822,339 - -0.7 822,339 - +0.5 822,339 - +0.8 822,339 - -1.2 822,339 - +0.2 822,339 - -0.2 822,339 - -0.1 822,339 - -0.5 822,339 - -0.2 822,339 - +0.6 822,339 - -0.2 822,339 - +0.2 822,339 - +0.2 822,342 + +1.5 822,366 - +0.8 822,425 + -0.7 822,425 + +0.5 822,426 - +0.3 822,426 - -0.5 822,534 + -0.2 822,541 + -0.2 822,541 + +0.9 822,542 - +0.5 822,574 + +0.6 822,598 + -0.3 822,599 - +0.2 822,599 - -0.4 822,689 - +0.0 822,716 + -0.1 822,716 + +0.6 822,717 - +0.6 822,717 - +0.4 822,717 - -0.6 822,724 - +0.3 822,734 - -1.0 822,746 - +0.1 822,746 - +0.9 822,772 + -0.4 822,798 - +0.1 822,835 + OHPLBJKB_00800 0.10 -1.7 822,855 + OHPLBJKB_00800 0.12 -0.8 822,923 + OHPLBJKB_00800 0.20 -0.7 822,923 + OHPLBJKB_00800 0.20 +0.1 822,924 - OHPLBJKB_00800 0.20 -1.4 822,924 - OHPLBJKB_00800 0.20 -3.4 822,924 - OHPLBJKB_00800 0.20 +0.2 822,924 - OHPLBJKB_00800 0.20 -0.1 822,974 + OHPLBJKB_00800 0.26 -2.1 823,112 - OHPLBJKB_00800 0.41 -1.7 823,147 + OHPLBJKB_00800 0.45 -2.0 823,167 - OHPLBJKB_00800 0.47 -1.9 823,202 + OHPLBJKB_00800 0.51 -1.5 823,203 - OHPLBJKB_00800 0.51 -0.1 823,203 - OHPLBJKB_00800 0.51 +0.6 823,263 + OHPLBJKB_00800 0.58 +0.9 823,264 - OHPLBJKB_00800 0.58 -1.2 823,505 + OHPLBJKB_00800 0.85 -1.9 823,506 - OHPLBJKB_00800 0.85 -2.2 823,506 - OHPLBJKB_00800 0.85 -2.2 823,506 - OHPLBJKB_00800 0.85 -1.1 823,520 + OHPLBJKB_00800 0.87 +1.3 823,520 + OHPLBJKB_00800 0.87 -0.4 823,520 + OHPLBJKB_00800 0.87 -1.5 823,591 - -2.0 823,611 + -1.7 823,612 - -1.7 823,622 - -1.5 823,622 - -1.9 823,622 - -0.2 823,657 + +0.2 823,657 + +0.3 823,657 + -1.0 823,658 - -0.1 823,658 - +0.5 823,676 + -0.1 823,676 + -0.3 823,677 - -0.3 823,703 + -0.8 823,703 + -0.1 823,704 - -0.6 823,704 - -2.7 823,704 - -0.1 823,705 + -1.4 823,705 + +0.6 823,706 - -0.0 823,706 - +0.1 823,706 - -0.8 823,734 - +0.1 823,734 - -1.2 823,850 + OHPLBJKB_00801 0.31 +1.0 823,920 + OHPLBJKB_00801 0.61 +0.4 823,920 + OHPLBJKB_00801 0.61 -0.1 823,920 + OHPLBJKB_00801 0.61 -0.2 823,920 + OHPLBJKB_00801 0.61 -0.1 823,921 - OHPLBJKB_00801 0.61 +0.0 823,921 - OHPLBJKB_00801 0.61 -0.5 823,921 - OHPLBJKB_00801 0.61 -0.1 823,921 - OHPLBJKB_00801 0.61 -0.4 823,927 + OHPLBJKB_00801 0.64 -0.1 823,928 - OHPLBJKB_00801 0.65 +0.1 823,965 + OHPLBJKB_00801 0.81 -0.3 824,025 + -0.2 824,026 - -0.3 824,026 - -1.0 824,026 - -0.8 824,026 - +0.6 824,027 + -1.7 824,027 + -0.7 824,027 + -0.2 824,027 + -1.2 824,027 + -0.1 824,027 + +0.7 824,027 + +0.1 824,027 + +1.0 824,027 + +0.2 824,027 + -0.9 824,027 + +0.1
Or see this region's nucleotide sequence