Strain Fitness in Escherichia coli HS(pFamp)R (ATCC 700891) around OHPLBJKB_00717

Experiment: lim MOI10

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOHPLBJKB_00716 and OHPLBJKB_00717 overlap by 1 nucleotidesOHPLBJKB_00717 and OHPLBJKB_00718 are separated by 11 nucleotidesOHPLBJKB_00718 and OHPLBJKB_00719 are separated by 30 nucleotides OHPLBJKB_00716: OHPLBJKB_00716 - hypothetical protein, at 733,663 to 735,012 _00716 OHPLBJKB_00717: OHPLBJKB_00717 - hypothetical protein, at 735,012 to 735,836 _00717 OHPLBJKB_00718: OHPLBJKB_00718 - putative protein YtfJ, at 735,848 to 736,408 _00718 OHPLBJKB_00719: OHPLBJKB_00719 - hypothetical protein, at 736,439 to 737,509 _00719 Position (kb) 735 736Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 734.015 kb on + strand, within OHPLBJKB_00716at 734.016 kb on - strand, within OHPLBJKB_00716at 734.039 kb on + strand, within OHPLBJKB_00716at 734.040 kb on - strand, within OHPLBJKB_00716at 734.040 kb on - strand, within OHPLBJKB_00716at 734.078 kb on - strand, within OHPLBJKB_00716at 734.135 kb on + strand, within OHPLBJKB_00716at 734.135 kb on + strand, within OHPLBJKB_00716at 734.159 kb on + strand, within OHPLBJKB_00716at 734.205 kb on - strand, within OHPLBJKB_00716at 734.212 kb on + strand, within OHPLBJKB_00716at 734.251 kb on + strand, within OHPLBJKB_00716at 734.252 kb on - strand, within OHPLBJKB_00716at 734.281 kb on + strand, within OHPLBJKB_00716at 734.281 kb on + strand, within OHPLBJKB_00716at 734.281 kb on + strand, within OHPLBJKB_00716at 734.281 kb on + strand, within OHPLBJKB_00716at 734.281 kb on + strand, within OHPLBJKB_00716at 734.281 kb on + strand, within OHPLBJKB_00716at 734.281 kb on + strand, within OHPLBJKB_00716at 734.282 kb on - strand, within OHPLBJKB_00716at 734.282 kb on - strand, within OHPLBJKB_00716at 734.282 kb on - strand, within OHPLBJKB_00716at 734.282 kb on - strand, within OHPLBJKB_00716at 734.282 kb on - strand, within OHPLBJKB_00716at 734.488 kb on - strand, within OHPLBJKB_00716at 734.488 kb on - strand, within OHPLBJKB_00716at 734.534 kb on + strand, within OHPLBJKB_00716at 734.570 kb on + strand, within OHPLBJKB_00716at 734.571 kb on - strand, within OHPLBJKB_00716at 734.705 kb on - strand, within OHPLBJKB_00716at 734.717 kb on - strand, within OHPLBJKB_00716at 734.787 kb on - strand, within OHPLBJKB_00716at 734.845 kb on + strand, within OHPLBJKB_00716at 734.852 kb on + strand, within OHPLBJKB_00716at 734.853 kb on - strand, within OHPLBJKB_00716at 734.943 kb on - strandat 734.955 kb on - strandat 734.986 kb on + strandat 734.986 kb on + strandat 734.987 kb on - strandat 734.987 kb on - strandat 734.987 kb on - strandat 734.989 kb on - strandat 735.053 kb on - strandat 735.110 kb on + strand, within OHPLBJKB_00717at 735.111 kb on - strand, within OHPLBJKB_00717at 735.118 kb on + strand, within OHPLBJKB_00717at 735.125 kb on + strand, within OHPLBJKB_00717at 735.125 kb on + strand, within OHPLBJKB_00717at 735.125 kb on + strand, within OHPLBJKB_00717at 735.146 kb on + strand, within OHPLBJKB_00717at 735.151 kb on - strand, within OHPLBJKB_00717at 735.151 kb on - strand, within OHPLBJKB_00717at 735.157 kb on + strand, within OHPLBJKB_00717at 735.200 kb on - strand, within OHPLBJKB_00717at 735.263 kb on + strand, within OHPLBJKB_00717at 735.263 kb on + strand, within OHPLBJKB_00717at 735.264 kb on - strand, within OHPLBJKB_00717at 735.267 kb on + strand, within OHPLBJKB_00717at 735.268 kb on - strand, within OHPLBJKB_00717at 735.268 kb on - strand, within OHPLBJKB_00717at 735.268 kb on - strand, within OHPLBJKB_00717at 735.268 kb on - strand, within OHPLBJKB_00717at 735.282 kb on + strand, within OHPLBJKB_00717at 735.312 kb on + strand, within OHPLBJKB_00717at 735.316 kb on + strand, within OHPLBJKB_00717at 735.317 kb on - strand, within OHPLBJKB_00717at 735.317 kb on - strand, within OHPLBJKB_00717at 735.404 kb on + strand, within OHPLBJKB_00717at 735.404 kb on + strand, within OHPLBJKB_00717at 735.438 kb on + strand, within OHPLBJKB_00717at 735.439 kb on - strand, within OHPLBJKB_00717at 735.443 kb on - strand, within OHPLBJKB_00717at 735.471 kb on + strand, within OHPLBJKB_00717at 735.472 kb on - strand, within OHPLBJKB_00717at 735.472 kb on - strand, within OHPLBJKB_00717at 735.502 kb on + strand, within OHPLBJKB_00717at 735.503 kb on - strand, within OHPLBJKB_00717at 735.553 kb on + strand, within OHPLBJKB_00717at 735.572 kb on - strand, within OHPLBJKB_00717at 735.633 kb on - strand, within OHPLBJKB_00717at 735.638 kb on - strand, within OHPLBJKB_00717at 735.638 kb on - strand, within OHPLBJKB_00717at 735.659 kb on + strand, within OHPLBJKB_00717at 735.762 kb on + strandat 735.762 kb on + strandat 735.762 kb on + strandat 735.762 kb on + strandat 735.763 kb on - strandat 735.806 kb on - strandat 735.833 kb on - strandat 735.878 kb on - strandat 735.944 kb on + strand, within OHPLBJKB_00718at 735.945 kb on - strand, within OHPLBJKB_00718at 735.945 kb on - strand, within OHPLBJKB_00718at 735.945 kb on - strand, within OHPLBJKB_00718at 735.945 kb on - strand, within OHPLBJKB_00718at 735.945 kb on - strand, within OHPLBJKB_00718at 735.946 kb on + strand, within OHPLBJKB_00718at 735.947 kb on - strand, within OHPLBJKB_00718at 736.060 kb on + strand, within OHPLBJKB_00718at 736.093 kb on + strand, within OHPLBJKB_00718at 736.094 kb on - strand, within OHPLBJKB_00718at 736.094 kb on - strand, within OHPLBJKB_00718at 736.094 kb on - strand, within OHPLBJKB_00718at 736.181 kb on + strand, within OHPLBJKB_00718at 736.181 kb on + strand, within OHPLBJKB_00718at 736.181 kb on + strand, within OHPLBJKB_00718at 736.182 kb on - strand, within OHPLBJKB_00718at 736.182 kb on - strand, within OHPLBJKB_00718at 736.365 kb on + strandat 736.365 kb on + strandat 736.365 kb on + strandat 736.366 kb on - strandat 736.366 kb on - strandat 736.366 kb on - strandat 736.366 kb on - strandat 736.457 kb on + strandat 736.457 kb on + strandat 736.458 kb on - strandat 736.458 kb on - strandat 736.527 kb on - strandat 736.569 kb on + strand, within OHPLBJKB_00719at 736.569 kb on + strand, within OHPLBJKB_00719at 736.569 kb on + strand, within OHPLBJKB_00719at 736.569 kb on + strand, within OHPLBJKB_00719at 736.570 kb on - strand, within OHPLBJKB_00719at 736.570 kb on - strand, within OHPLBJKB_00719at 736.646 kb on + strand, within OHPLBJKB_00719at 736.646 kb on + strand, within OHPLBJKB_00719at 736.646 kb on + strand, within OHPLBJKB_00719at 736.646 kb on + strand, within OHPLBJKB_00719at 736.646 kb on + strand, within OHPLBJKB_00719at 736.646 kb on + strand, within OHPLBJKB_00719at 736.646 kb on + strand, within OHPLBJKB_00719at 736.646 kb on + strand, within OHPLBJKB_00719at 736.647 kb on - strand, within OHPLBJKB_00719at 736.647 kb on - strand, within OHPLBJKB_00719at 736.679 kb on + strand, within OHPLBJKB_00719at 736.679 kb on + strand, within OHPLBJKB_00719at 736.679 kb on + strand, within OHPLBJKB_00719at 736.679 kb on + strand, within OHPLBJKB_00719at 736.680 kb on - strand, within OHPLBJKB_00719at 736.680 kb on - strand, within OHPLBJKB_00719at 736.680 kb on - strand, within OHPLBJKB_00719at 736.737 kb on - strand, within OHPLBJKB_00719at 736.737 kb on - strand, within OHPLBJKB_00719at 736.768 kb on - strand, within OHPLBJKB_00719at 736.772 kb on - strand, within OHPLBJKB_00719at 736.796 kb on + strand, within OHPLBJKB_00719at 736.796 kb on + strand, within OHPLBJKB_00719at 736.796 kb on + strand, within OHPLBJKB_00719at 736.796 kb on + strand, within OHPLBJKB_00719at 736.797 kb on - strand, within OHPLBJKB_00719at 736.797 kb on - strand, within OHPLBJKB_00719at 736.797 kb on - strand, within OHPLBJKB_00719at 736.797 kb on - strand, within OHPLBJKB_00719at 736.797 kb on - strand, within OHPLBJKB_00719at 736.797 kb on - strand, within OHPLBJKB_00719at 736.815 kb on - strand, within OHPLBJKB_00719at 736.826 kb on + strand, within OHPLBJKB_00719at 736.826 kb on + strand, within OHPLBJKB_00719at 736.826 kb on + strand, within OHPLBJKB_00719at 736.827 kb on - strand, within OHPLBJKB_00719

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Per-strain Table

Position Strand Gene LocusTag Fraction lim MOI10
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734,015 + OHPLBJKB_00716 0.26 -0.3
734,016 - OHPLBJKB_00716 0.26 -1.0
734,039 + OHPLBJKB_00716 0.28 +0.5
734,040 - OHPLBJKB_00716 0.28 -0.1
734,040 - OHPLBJKB_00716 0.28 +0.3
734,078 - OHPLBJKB_00716 0.31 +1.9
734,135 + OHPLBJKB_00716 0.35 +1.1
734,135 + OHPLBJKB_00716 0.35 -0.3
734,159 + OHPLBJKB_00716 0.37 -0.3
734,205 - OHPLBJKB_00716 0.40 +0.5
734,212 + OHPLBJKB_00716 0.41 -0.7
734,251 + OHPLBJKB_00716 0.44 +0.1
734,252 - OHPLBJKB_00716 0.44 +0.3
734,281 + OHPLBJKB_00716 0.46 +0.7
734,281 + OHPLBJKB_00716 0.46 -1.0
734,281 + OHPLBJKB_00716 0.46 +0.0
734,281 + OHPLBJKB_00716 0.46 +0.7
734,281 + OHPLBJKB_00716 0.46 +0.2
734,281 + OHPLBJKB_00716 0.46 +0.3
734,281 + OHPLBJKB_00716 0.46 -0.4
734,282 - OHPLBJKB_00716 0.46 -0.9
734,282 - OHPLBJKB_00716 0.46 -0.4
734,282 - OHPLBJKB_00716 0.46 +0.2
734,282 - OHPLBJKB_00716 0.46 +0.7
734,282 - OHPLBJKB_00716 0.46 -1.7
734,488 - OHPLBJKB_00716 0.61 -0.5
734,488 - OHPLBJKB_00716 0.61 -1.3
734,534 + OHPLBJKB_00716 0.65 -0.3
734,570 + OHPLBJKB_00716 0.67 +0.5
734,571 - OHPLBJKB_00716 0.67 +1.3
734,705 - OHPLBJKB_00716 0.77 +0.3
734,717 - OHPLBJKB_00716 0.78 +0.1
734,787 - OHPLBJKB_00716 0.83 +0.5
734,845 + OHPLBJKB_00716 0.88 -2.0
734,852 + OHPLBJKB_00716 0.88 -0.7
734,853 - OHPLBJKB_00716 0.88 +0.3
734,943 - +0.7
734,955 - +0.2
734,986 + +0.4
734,986 + +0.3
734,987 - -0.8
734,987 - +0.4
734,987 - +0.2
734,989 - -1.5
735,053 - +0.2
735,110 + OHPLBJKB_00717 0.12 -0.7
735,111 - OHPLBJKB_00717 0.12 -0.4
735,118 + OHPLBJKB_00717 0.13 +0.6
735,125 + OHPLBJKB_00717 0.14 -0.4
735,125 + OHPLBJKB_00717 0.14 +0.1
735,125 + OHPLBJKB_00717 0.14 -0.8
735,146 + OHPLBJKB_00717 0.16 +0.3
735,151 - OHPLBJKB_00717 0.17 +0.6
735,151 - OHPLBJKB_00717 0.17 -1.9
735,157 + OHPLBJKB_00717 0.18 -0.1
735,200 - OHPLBJKB_00717 0.23 +0.5
735,263 + OHPLBJKB_00717 0.30 -0.1
735,263 + OHPLBJKB_00717 0.30 -0.3
735,264 - OHPLBJKB_00717 0.31 -0.0
735,267 + OHPLBJKB_00717 0.31 -0.5
735,268 - OHPLBJKB_00717 0.31 +0.8
735,268 - OHPLBJKB_00717 0.31 +0.9
735,268 - OHPLBJKB_00717 0.31 +0.5
735,268 - OHPLBJKB_00717 0.31 -0.1
735,282 + OHPLBJKB_00717 0.33 +0.5
735,312 + OHPLBJKB_00717 0.36 +0.0
735,316 + OHPLBJKB_00717 0.37 -0.4
735,317 - OHPLBJKB_00717 0.37 +0.1
735,317 - OHPLBJKB_00717 0.37 +1.4
735,404 + OHPLBJKB_00717 0.48 -0.1
735,404 + OHPLBJKB_00717 0.48 -2.0
735,438 + OHPLBJKB_00717 0.52 -0.2
735,439 - OHPLBJKB_00717 0.52 +0.2
735,443 - OHPLBJKB_00717 0.52 -0.9
735,471 + OHPLBJKB_00717 0.56 -0.2
735,472 - OHPLBJKB_00717 0.56 -0.2
735,472 - OHPLBJKB_00717 0.56 +0.2
735,502 + OHPLBJKB_00717 0.59 -0.4
735,503 - OHPLBJKB_00717 0.60 +1.2
735,553 + OHPLBJKB_00717 0.66 +0.4
735,572 - OHPLBJKB_00717 0.68 +0.4
735,633 - OHPLBJKB_00717 0.75 -0.4
735,638 - OHPLBJKB_00717 0.76 +0.5
735,638 - OHPLBJKB_00717 0.76 +0.9
735,659 + OHPLBJKB_00717 0.78 -3.2
735,762 + -0.7
735,762 + +0.3
735,762 + -1.0
735,762 + +0.3
735,763 - +0.3
735,806 - +1.1
735,833 - -0.5
735,878 - +1.3
735,944 + OHPLBJKB_00718 0.17 -0.1
735,945 - OHPLBJKB_00718 0.17 -0.3
735,945 - OHPLBJKB_00718 0.17 -1.0
735,945 - OHPLBJKB_00718 0.17 -0.8
735,945 - OHPLBJKB_00718 0.17 -0.6
735,945 - OHPLBJKB_00718 0.17 -0.2
735,946 + OHPLBJKB_00718 0.17 +0.2
735,947 - OHPLBJKB_00718 0.18 +0.2
736,060 + OHPLBJKB_00718 0.38 +0.9
736,093 + OHPLBJKB_00718 0.44 -0.3
736,094 - OHPLBJKB_00718 0.44 +0.0
736,094 - OHPLBJKB_00718 0.44 +0.1
736,094 - OHPLBJKB_00718 0.44 -0.9
736,181 + OHPLBJKB_00718 0.59 -1.3
736,181 + OHPLBJKB_00718 0.59 +0.6
736,181 + OHPLBJKB_00718 0.59 -0.2
736,182 - OHPLBJKB_00718 0.60 +0.3
736,182 - OHPLBJKB_00718 0.60 +0.2
736,365 + -0.1
736,365 + -0.7
736,365 + -0.7
736,366 - -0.3
736,366 - -0.2
736,366 - +0.8
736,366 - -0.5
736,457 + +0.2
736,457 + +0.8
736,458 - +0.1
736,458 - -0.0
736,527 - -0.4
736,569 + OHPLBJKB_00719 0.12 +0.7
736,569 + OHPLBJKB_00719 0.12 -0.8
736,569 + OHPLBJKB_00719 0.12 +0.0
736,569 + OHPLBJKB_00719 0.12 -0.1
736,570 - OHPLBJKB_00719 0.12 -0.1
736,570 - OHPLBJKB_00719 0.12 -0.7
736,646 + OHPLBJKB_00719 0.19 -0.3
736,646 + OHPLBJKB_00719 0.19 +0.0
736,646 + OHPLBJKB_00719 0.19 -0.4
736,646 + OHPLBJKB_00719 0.19 +1.4
736,646 + OHPLBJKB_00719 0.19 -0.2
736,646 + OHPLBJKB_00719 0.19 +0.3
736,646 + OHPLBJKB_00719 0.19 +0.6
736,646 + OHPLBJKB_00719 0.19 +0.8
736,647 - OHPLBJKB_00719 0.19 -0.8
736,647 - OHPLBJKB_00719 0.19 +0.2
736,679 + OHPLBJKB_00719 0.22 +0.2
736,679 + OHPLBJKB_00719 0.22 +0.1
736,679 + OHPLBJKB_00719 0.22 +1.0
736,679 + OHPLBJKB_00719 0.22 +0.3
736,680 - OHPLBJKB_00719 0.23 -1.1
736,680 - OHPLBJKB_00719 0.23 -0.1
736,680 - OHPLBJKB_00719 0.23 +1.9
736,737 - OHPLBJKB_00719 0.28 +0.3
736,737 - OHPLBJKB_00719 0.28 +0.1
736,768 - OHPLBJKB_00719 0.31 -1.0
736,772 - OHPLBJKB_00719 0.31 -0.1
736,796 + OHPLBJKB_00719 0.33 -0.5
736,796 + OHPLBJKB_00719 0.33 +0.2
736,796 + OHPLBJKB_00719 0.33 +0.3
736,796 + OHPLBJKB_00719 0.33 +0.2
736,797 - OHPLBJKB_00719 0.33 +0.1
736,797 - OHPLBJKB_00719 0.33 +0.5
736,797 - OHPLBJKB_00719 0.33 +0.4
736,797 - OHPLBJKB_00719 0.33 +0.7
736,797 - OHPLBJKB_00719 0.33 +0.0
736,797 - OHPLBJKB_00719 0.33 -2.2
736,815 - OHPLBJKB_00719 0.35 -0.5
736,826 + OHPLBJKB_00719 0.36 -0.8
736,826 + OHPLBJKB_00719 0.36 -0.7
736,826 + OHPLBJKB_00719 0.36 -0.3
736,827 - OHPLBJKB_00719 0.36 -0.3

Or see this region's nucleotide sequence