Strain Fitness in Escherichia fergusonii Becca around EFB2_04085

Experiment: phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2)
4,290,113	+				+0.5
4,290,113	+				+0.2
4,290,114	-				-0.2
4,290,117	+				+0.1
4,290,117	+				-3.1
4,290,117	+				-0.7
4,290,117	+				+0.4
4,290,118	-				-1.1
4,290,118	-				+0.6
4,290,143	+				-2.3
4,290,157	+				+1.5
4,290,158	-				-0.3
4,290,158	-				-2.7
4,290,158	-				+0.4
4,290,158	-				-0.5
4,290,164	-				+1.1
4,290,198	+				-0.5
4,290,198	+				-3.5
4,290,198	+				+1.3
4,290,199	-				+0.2
4,290,240	+				+1.8
4,290,261	+				-2.0
4,290,261	+				-3.3
4,290,262	-				+4.1
4,290,262	-				-0.4
4,290,267	-				+1.6
4,290,292	+				+1.1
4,290,292	+				+0.3
4,290,292	+				-1.3
4,290,292	+				+1.9
4,290,293	-				+1.0
4,290,293	-				+0.6
4,290,320	+				+0.7
4,290,321	-				-1.2
4,290,333	+				-0.7
4,290,334	-				-0.2
4,290,351	-				-0.8
4,290,351	-				+1.5
4,290,351	-				-1.3
4,290,351	-				-2.3
4,290,376	+				-1.0
4,290,376	+				+0.4
4,290,390	-				-0.7
4,290,390	-				+0.0
4,290,403	+				+0.0
4,290,403	+				-0.1
4,290,404	-				+1.7
4,290,404	-				+0.2
4,290,497	+		EFB2_04084	0.19	+0.7
4,290,497	+		EFB2_04084	0.19	+0.1
4,290,497	+		EFB2_04084	0.19	+1.3
4,290,497	+		EFB2_04084	0.19	-1.2
4,290,498	-		EFB2_04084	0.19	-2.1
4,290,498	-		EFB2_04084	0.19	-0.4
4,290,514	+		EFB2_04084	0.21	+1.8
4,290,514	+		EFB2_04084	0.21	+0.3
4,290,514	+		EFB2_04084	0.21	-2.1
4,290,514	+		EFB2_04084	0.21	+1.7
4,290,514	+		EFB2_04084	0.21	-1.7
4,290,515	-		EFB2_04084	0.21	-0.1
4,290,530	+		EFB2_04084	0.23	+0.8
4,290,530	+		EFB2_04084	0.23	-0.4
4,290,530	+		EFB2_04084	0.23	-1.1
4,290,530	+		EFB2_04084	0.23	-1.5
4,290,560	+		EFB2_04084	0.27	-0.1
4,290,560	+		EFB2_04084	0.27	+0.9
4,290,561	-		EFB2_04084	0.27	-0.4
4,290,581	+		EFB2_04084	0.30	-0.3
4,290,581	+		EFB2_04084	0.30	-0.6
4,290,582	-		EFB2_04084	0.30	+0.9
4,290,582	-		EFB2_04084	0.30	-1.5
4,290,582	-		EFB2_04084	0.30	-2.3
4,290,582	-		EFB2_04084	0.30	-1.1
4,290,582	-		EFB2_04084	0.30	-1.1
4,290,582	-		EFB2_04084	0.30	-0.1
4,290,582	-		EFB2_04084	0.30	-0.0
4,290,584	+		EFB2_04084	0.30	-1.1
4,290,584	+		EFB2_04084	0.30	-2.6
4,290,584	+		EFB2_04084	0.30	-2.5
4,290,584	+		EFB2_04084	0.30	+0.2
4,290,584	+		EFB2_04084	0.30	+0.1
4,290,584	+		EFB2_04084	0.30	-0.7
4,290,584	+		EFB2_04084	0.30	-1.2
4,290,584	+		EFB2_04084	0.30	-2.9
4,290,584	+		EFB2_04084	0.30	-2.0
4,290,584	+		EFB2_04084	0.30	-0.0
4,290,584	+		EFB2_04084	0.30	+0.3
4,290,584	+		EFB2_04084	0.30	-1.4
4,290,584	+		EFB2_04084	0.30	-0.4
4,290,584	+		EFB2_04084	0.30	-2.0
4,290,584	+		EFB2_04084	0.30	+0.1
4,290,584	+		EFB2_04084	0.30	-0.3
4,290,584	+		EFB2_04084	0.30	+0.4
4,290,585	-		EFB2_04084	0.30	-0.4
4,290,585	-		EFB2_04084	0.30	-1.1
4,290,585	-		EFB2_04084	0.30	-0.8
4,290,585	-		EFB2_04084	0.30	+0.5
4,290,585	-		EFB2_04084	0.30	+1.0
4,290,585	-		EFB2_04084	0.30	+1.3
4,290,585	-		EFB2_04084	0.30	+0.8
4,290,585	-		EFB2_04084	0.30	-3.0
4,290,585	-		EFB2_04084	0.30	-0.4
4,290,585	-		EFB2_04084	0.30	+1.0
4,290,585	-		EFB2_04084	0.30	-1.4
4,290,585	-		EFB2_04084	0.30	-2.6
4,290,585	-		EFB2_04084	0.30	+2.0
4,290,616	+		EFB2_04084	0.34	-2.3
4,290,616	+		EFB2_04084	0.34	-0.3
4,290,616	+		EFB2_04084	0.34	+1.4
4,290,616	+		EFB2_04084	0.34	+1.8
4,290,616	+		EFB2_04084	0.34	-0.5
4,290,616	+		EFB2_04084	0.34	+1.0
4,290,617	-		EFB2_04084	0.35	-2.2
4,290,617	-		EFB2_04084	0.35	-2.1
4,290,617	-		EFB2_04084	0.35	-0.4
4,290,617	-		EFB2_04084	0.35	-0.3
4,290,617	-		EFB2_04084	0.35	+0.4
4,290,645	+		EFB2_04084	0.38	+0.6
4,290,645	+		EFB2_04084	0.38	+0.2
4,290,645	+		EFB2_04084	0.38	+0.0
4,290,645	+		EFB2_04084	0.38	+2.0
4,290,645	+		EFB2_04084	0.38	+0.9
4,290,646	-		EFB2_04084	0.38	+1.3
4,290,655	+		EFB2_04084	0.39	+0.3
4,290,668	+		EFB2_04084	0.41	+0.9
4,290,685	+		EFB2_04084	0.43	-0.5
4,290,685	+		EFB2_04084	0.43	-2.0
4,290,685	+		EFB2_04084	0.43	+1.4
4,290,685	+		EFB2_04084	0.43	+0.2
4,290,685	+		EFB2_04084	0.43	+0.4
4,290,685	+		EFB2_04084	0.43	-0.7
4,290,685	+		EFB2_04084	0.43	-2.7
4,290,685	+		EFB2_04084	0.43	-1.1
4,290,686	-		EFB2_04084	0.43	+0.8
4,290,686	-		EFB2_04084	0.43	+0.2
4,290,686	-		EFB2_04084	0.43	+0.6
4,290,686	-		EFB2_04084	0.43	+0.8
4,290,686	-		EFB2_04084	0.43	+0.9
4,290,686	-		EFB2_04084	0.43	+0.3
4,290,686	-		EFB2_04084	0.43	+1.3
4,290,686	-		EFB2_04084	0.43	+0.5
4,290,686	-		EFB2_04084	0.43	+1.2
4,290,686	-		EFB2_04084	0.43	-0.3
4,290,686	-		EFB2_04084	0.43	-1.3
4,290,686	-		EFB2_04084	0.43	-1.2
4,290,686	-		EFB2_04084	0.43	+0.6
4,290,686	-		EFB2_04084	0.43	-0.9
4,290,706	+		EFB2_04084	0.46	-0.1
4,290,706	+		EFB2_04084	0.46	-0.7
4,290,712	+		EFB2_04084	0.47	-0.1
4,290,712	+		EFB2_04084	0.47	-0.0
4,290,713	-		EFB2_04084	0.47	-0.6
4,290,743	+		EFB2_04084	0.51	+0.6
4,290,743	+		EFB2_04084	0.51	-3.3
4,290,807	+		EFB2_04084	0.59	-1.4
4,290,807	+		EFB2_04084	0.59	-2.1
4,290,807	+		EFB2_04084	0.59	-2.4
4,290,807	+		EFB2_04084	0.59	-1.0
4,290,807	+		EFB2_04084	0.59	-1.9
4,290,807	+		EFB2_04084	0.59	+1.2
4,290,807	+		EFB2_04084	0.59	-2.9
4,290,807	+		EFB2_04084	0.59	+0.9
4,290,807	+		EFB2_04084	0.59	-2.1
4,290,807	+		EFB2_04084	0.59	-0.4
4,290,807	+		EFB2_04084	0.59	+1.9
4,290,807	+		EFB2_04084	0.59	+1.9
4,290,807	+		EFB2_04084	0.59	-3.0
4,290,807	+		EFB2_04084	0.59	-0.2
4,290,807	+		EFB2_04084	0.59	-0.1
4,290,807	+		EFB2_04084	0.59	+1.4
4,290,807	+		EFB2_04084	0.59	-1.5
4,290,807	+		EFB2_04084	0.59	-0.1
4,290,807	+		EFB2_04084	0.59	-3.6
4,290,807	+		EFB2_04084	0.59	+0.4
4,290,807	+		EFB2_04084	0.59	-0.7
4,290,807	+		EFB2_04084	0.59	-1.3
4,290,807	+		EFB2_04084	0.59	+0.7
4,290,807	+		EFB2_04084	0.59	-1.4
4,290,807	+		EFB2_04084	0.59	+2.3
4,290,807	+		EFB2_04084	0.59	+2.3
4,290,807	+		EFB2_04084	0.59	+1.3
4,290,807	+		EFB2_04084	0.59	-0.5
4,290,807	+		EFB2_04084	0.59	-0.8
4,290,807	+		EFB2_04084	0.59	+0.9
4,290,807	+		EFB2_04084	0.59	-2.3
4,290,807	+		EFB2_04084	0.59	-0.1
4,290,807	+		EFB2_04084	0.59	-0.5
4,290,807	+		EFB2_04084	0.59	-1.1
4,290,807	+		EFB2_04084	0.59	-3.5
4,290,807	+		EFB2_04084	0.59	-0.0
4,290,807	+		EFB2_04084	0.59	-1.1
4,290,807	+		EFB2_04084	0.59	+0.0
4,290,808	-		EFB2_04084	0.59	+0.9
4,290,808	-		EFB2_04084	0.59	-1.4
4,290,808	-		EFB2_04084	0.59	+1.2
4,290,808	-		EFB2_04084	0.59	-0.6
4,290,808	-		EFB2_04084	0.59	+1.2
4,290,808	-		EFB2_04084	0.59	-1.4
4,290,808	-		EFB2_04084	0.59	-0.2
4,290,808	-		EFB2_04084	0.59	-0.1
4,290,808	-		EFB2_04084	0.59	-1.6
4,290,808	-		EFB2_04084	0.59	-0.1
4,290,808	-		EFB2_04084	0.59	+1.1
4,290,808	-		EFB2_04084	0.59	+0.7
4,290,808	-		EFB2_04084	0.59	+1.8
4,290,808	-		EFB2_04084	0.59	+1.2
4,290,808	-		EFB2_04084	0.59	+1.1
4,290,808	-		EFB2_04084	0.59	+1.1
4,290,808	-		EFB2_04084	0.59	-0.4
4,290,808	-		EFB2_04084	0.59	-0.2
4,290,808	-		EFB2_04084	0.59	-0.7
4,290,808	-		EFB2_04084	0.59	+2.2
4,290,808	-		EFB2_04084	0.59	-1.5
4,290,808	-		EFB2_04084	0.59	-1.7
4,290,808	-		EFB2_04084	0.59	+1.3
4,290,808	-		EFB2_04084	0.59	+1.6
4,290,808	-		EFB2_04084	0.59	-1.0
4,290,808	-		EFB2_04084	0.59	-0.5
4,290,808	-		EFB2_04084	0.59	-1.6
4,290,808	-		EFB2_04084	0.59	-0.1
4,290,808	-		EFB2_04084	0.59	-1.3
4,290,808	-		EFB2_04084	0.59	+0.0
4,290,808	-		EFB2_04084	0.59	+1.9
4,290,808	-		EFB2_04084	0.59	-0.5
4,290,808	-		EFB2_04084	0.59	+1.2
4,290,808	-		EFB2_04084	0.59	+1.3
4,290,982	+		EFB2_04084	0.82	-0.1
4,290,982	+		EFB2_04084	0.82	+0.9
4,290,982	+		EFB2_04084	0.82	+3.3
4,290,983	-		EFB2_04084	0.82	+0.4
4,290,983	-		EFB2_04084	0.82	+0.0
4,290,983	-		EFB2_04084	0.82	-0.0
4,290,983	-		EFB2_04084	0.82	+0.6
4,290,983	-		EFB2_04084	0.82	-0.6
4,290,983	-		EFB2_04084	0.82	-2.9
4,290,983	-		EFB2_04084	0.82	-1.0
4,290,998	+		EFB2_04084	0.84	-3.0
4,290,999	-		EFB2_04084	0.84	-3.6
4,291,004	+		EFB2_04084	0.85	-3.3
4,291,004	+		EFB2_04084	0.85	-1.5
4,291,004	+		EFB2_04084	0.85	-0.2
4,291,005	-		EFB2_04084	0.85	+1.7
4,291,005	-		EFB2_04084	0.85	+0.7
4,291,005	-		EFB2_04084	0.85	-1.1
4,291,064	+				-2.1
4,291,065	-				-3.9
4,291,065	-				+0.9
4,291,079	-				+0.4
4,291,079	-				+0.4
4,291,079	-				-2.1
4,291,079	-				-0.3
4,291,081	+				+0.4
4,291,081	+				+0.4
4,291,081	+				+0.2
4,291,081	+				+3.6
4,291,081	+				-0.8
4,291,082	-				-1.9
4,291,082	-				-0.1
4,291,082	-				-0.2
4,291,082	-				-1.6
4,291,082	-				+0.2
4,291,135	-				-0.1
4,291,150	+				-1.0
4,291,150	+				-2.3
4,291,150	+				+1.7
4,291,151	-				+0.0
4,291,151	-				-0.8
4,291,151	-				-1.5
4,291,151	-				+0.8
4,291,151	-				-2.5
4,291,216	-		EFB2_04085	0.22	+0.2
4,291,242	+		EFB2_04085	0.27	+0.6
4,291,242	+		EFB2_04085	0.27	-0.3
4,291,242	+		EFB2_04085	0.27	+0.2
4,291,242	+		EFB2_04085	0.27	+0.5
4,291,243	-		EFB2_04085	0.28	-1.1
4,291,243	-		EFB2_04085	0.28	-0.5
4,291,266	+		EFB2_04085	0.32	-0.4
4,291,266	+		EFB2_04085	0.32	-1.2
4,291,266	+		EFB2_04085	0.32	+0.6
4,291,267	-		EFB2_04085	0.33	+0.9
4,291,267	-		EFB2_04085	0.33	+0.6
4,291,285	+		EFB2_04085	0.36	-0.1
4,291,285	+		EFB2_04085	0.36	+1.5
4,291,286	-		EFB2_04085	0.37	-1.3
4,291,286	-		EFB2_04085	0.37	-0.9
4,291,303	+		EFB2_04085	0.40	-0.1
4,291,312	+		EFB2_04085	0.42	-0.8
4,291,312	+		EFB2_04085	0.42	-1.6
4,291,312	+		EFB2_04085	0.42	-2.1
4,291,312	+		EFB2_04085	0.42	-0.4
4,291,312	+		EFB2_04085	0.42	-2.6
4,291,312	+		EFB2_04085	0.42	+1.2
4,291,312	+		EFB2_04085	0.42	-0.2
4,291,313	-		EFB2_04085	0.42	+1.8
4,291,313	-		EFB2_04085	0.42	-1.5
4,291,313	-		EFB2_04085	0.42	+0.4
4,291,313	-		EFB2_04085	0.42	-1.2
4,291,313	-		EFB2_04085	0.42	+0.2
4,291,313	-		EFB2_04085	0.42	-0.8
4,291,313	-		EFB2_04085	0.42	+2.0
4,291,313	-		EFB2_04085	0.42	-0.3
4,291,333	+		EFB2_04085	0.47	+0.5
4,291,333	+		EFB2_04085	0.47	+0.0
4,291,333	+		EFB2_04085	0.47	-0.4
4,291,333	+		EFB2_04085	0.47	+0.8
4,291,334	-		EFB2_04085	0.47	-2.1
4,291,334	-		EFB2_04085	0.47	-0.5
4,291,334	-		EFB2_04085	0.47	-0.1
4,291,334	-		EFB2_04085	0.47	-1.9
4,291,390	+		EFB2_04085	0.59	-0.1
4,291,391	-		EFB2_04085	0.59	+1.4
4,291,396	+		EFB2_04085	0.60	+1.2
4,291,396	+		EFB2_04085	0.60	+0.3
4,291,397	-		EFB2_04085	0.60	+1.0
4,291,397	-		EFB2_04085	0.60	+0.1
4,291,397	-		EFB2_04085	0.60	+0.5
4,291,410	+		EFB2_04085	0.63	+0.8
4,291,410	+		EFB2_04085	0.63	+2.3
4,291,410	+		EFB2_04085	0.63	+0.4
4,291,410	+		EFB2_04085	0.63	-0.9
4,291,410	+		EFB2_04085	0.63	-2.1
4,291,410	+		EFB2_04085	0.63	+0.4
4,291,411	-		EFB2_04085	0.63	+0.7
4,291,411	-		EFB2_04085	0.63	-3.0
4,291,411	-		EFB2_04085	0.63	-0.3
4,291,411	-		EFB2_04085	0.63	+0.2
4,291,411	-		EFB2_04085	0.63	-2.0
4,291,411	-		EFB2_04085	0.63	-2.8
4,291,411	-		EFB2_04085	0.63	-2.2
4,291,418	+		EFB2_04085	0.65	+0.6
4,291,418	+		EFB2_04085	0.65	-1.9
4,291,418	+		EFB2_04085	0.65	+0.1
4,291,418	+		EFB2_04085	0.65	-1.8
4,291,418	+		EFB2_04085	0.65	-0.9
4,291,418	+		EFB2_04085	0.65	+0.8
4,291,419	-		EFB2_04085	0.65	+1.6
4,291,419	-		EFB2_04085	0.65	-1.0
4,291,419	-		EFB2_04085	0.65	-1.8
4,291,420	+		EFB2_04085	0.65	-2.5
4,291,420	+		EFB2_04085	0.65	-2.0
4,291,420	+		EFB2_04085	0.65	-2.8
4,291,421	-		EFB2_04085	0.65	-0.0
4,291,421	-		EFB2_04085	0.65	-2.5
4,291,421	-		EFB2_04085	0.65	-1.9
4,291,421	-		EFB2_04085	0.65	+1.1
4,291,421	-		EFB2_04085	0.65	+0.5
4,291,421	-		EFB2_04085	0.65	-0.5
4,291,455	+		EFB2_04085	0.72	-0.9
4,291,455	+		EFB2_04085	0.72	-0.5
4,291,455	+		EFB2_04085	0.72	-0.5
4,291,455	+		EFB2_04085	0.72	-2.1
4,291,455	+		EFB2_04085	0.72	-0.2
4,291,455	+		EFB2_04085	0.72	-0.7
4,291,455	+		EFB2_04085	0.72	+0.8
4,291,455	+		EFB2_04085	0.72	-0.7
4,291,456	-		EFB2_04085	0.73	+0.2
4,291,456	-		EFB2_04085	0.73	-0.1
4,291,456	-		EFB2_04085	0.73	-0.7
4,291,456	-		EFB2_04085	0.73	+0.3
4,291,456	-		EFB2_04085	0.73	-0.5
4,291,460	+		EFB2_04085	0.73	-0.7
4,291,554	+				+0.4
4,291,554	+				-2.6
4,291,554	+				-2.0
4,291,554	+				-1.0
4,291,554	+				-1.8
4,291,554	+				-1.1
4,291,554	+				+0.7
4,291,554	+				-0.9
4,291,555	-				+1.4
4,291,555	-				+0.1
4,291,555	-				+0.7
4,291,555	-				-0.9
4,291,555	-				-0.8
4,291,562	+				+1.6
4,291,563	-				-1.5
4,291,583	+				-2.4
4,291,583	+				+0.8
4,291,583	+				-1.1
4,291,583	+				-1.6
4,291,598	+				-0.2
4,291,598	+				-2.1
4,291,598	+				+1.3
4,291,598	+				+0.8
4,291,640	+				-1.4
4,291,640	+				+0.4
4,291,640	+				-0.3
4,291,640	+				-0.1
4,291,640	+				-0.7
4,291,643	+				+1.2
4,291,643	+				-0.8
4,291,643	+				+0.3
4,291,643	+				-0.0
4,291,643	+				-1.0
4,291,643	+				+0.6
4,291,643	+				+0.6
4,291,645	+				+0.8
4,291,652	+				+0.1
4,291,652	+				-2.6
4,291,652	+				+1.9
4,291,678	+				+0.6
4,291,678	+				+1.1
4,291,692	+				-3.7
4,291,692	+				-0.1
4,291,692	+				+2.3
4,291,692	+				-0.3