Strain Fitness in Escherichia fergusonii Becca around EFB2_03500

Experiment: phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2)
3,649,265	+		EFB2_03499	0.31	+0.0
3,649,265	+		EFB2_03499	0.31	-0.7
3,649,265	+		EFB2_03499	0.31	+0.9
3,649,293	+		EFB2_03499	0.34	+0.7
3,649,293	+		EFB2_03499	0.34	+0.1
3,649,293	+		EFB2_03499	0.34	+0.3
3,649,294	-		EFB2_03499	0.34	-0.7
3,649,294	-		EFB2_03499	0.34	+1.2
3,649,294	-		EFB2_03499	0.34	-1.6
3,649,301	+		EFB2_03499	0.34	+0.6
3,649,301	+		EFB2_03499	0.34	+0.1
3,649,302	-		EFB2_03499	0.34	+0.4
3,649,302	-		EFB2_03499	0.34	-1.7
3,649,302	-		EFB2_03499	0.34	+1.0
3,649,302	-		EFB2_03499	0.34	+1.4
3,649,317	+		EFB2_03499	0.36	+1.7
3,649,317	+		EFB2_03499	0.36	+1.3
3,649,318	-		EFB2_03499	0.36	-0.3
3,649,318	-		EFB2_03499	0.36	-0.5
3,649,318	-		EFB2_03499	0.36	+1.1
3,649,318	-		EFB2_03499	0.36	-1.5
3,649,318	-		EFB2_03499	0.36	+1.4
3,649,318	-		EFB2_03499	0.36	+0.4
3,649,451	+		EFB2_03499	0.47	+1.3
3,649,451	+		EFB2_03499	0.47	-0.4
3,649,451	+		EFB2_03499	0.47	+1.6
3,649,451	+		EFB2_03499	0.47	+1.5
3,649,452	-		EFB2_03499	0.47	-1.2
3,649,452	-		EFB2_03499	0.47	+0.9
3,649,452	-		EFB2_03499	0.47	-0.3
3,649,469	+		EFB2_03499	0.49	+1.1
3,649,473	+		EFB2_03499	0.49	-3.0
3,649,473	+		EFB2_03499	0.49	-3.0
3,649,473	+		EFB2_03499	0.49	+0.5
3,649,473	+		EFB2_03499	0.49	-1.8
3,649,473	+		EFB2_03499	0.49	+0.7
3,649,473	+		EFB2_03499	0.49	-1.6
3,649,474	-		EFB2_03499	0.49	-1.3
3,649,474	-		EFB2_03499	0.49	-1.4
3,649,474	-		EFB2_03499	0.49	+1.0
3,649,474	-		EFB2_03499	0.49	-1.6
3,649,474	-		EFB2_03499	0.49	-2.6
3,649,474	-		EFB2_03499	0.49	+1.8
3,649,474	-		EFB2_03499	0.49	-2.2
3,649,474	-		EFB2_03499	0.49	+0.2
3,649,474	-		EFB2_03499	0.49	-2.0
3,649,575	+		EFB2_03499	0.58	+1.3
3,649,575	+		EFB2_03499	0.58	-1.6
3,649,575	+		EFB2_03499	0.58	+0.3
3,649,576	-		EFB2_03499	0.58	-1.4
3,649,576	-		EFB2_03499	0.58	+0.9
3,649,576	-		EFB2_03499	0.58	-0.4
3,649,583	+		EFB2_03499	0.58	-1.7
3,649,584	-		EFB2_03499	0.58	-1.0
3,649,584	-		EFB2_03499	0.58	-0.2
3,649,601	+		EFB2_03499	0.60	-0.1
3,649,601	+		EFB2_03499	0.60	-0.0
3,649,602	-		EFB2_03499	0.60	+0.1
3,649,602	-		EFB2_03499	0.60	-0.4
3,649,602	-		EFB2_03499	0.60	-0.8
3,649,602	-		EFB2_03499	0.60	+1.0
3,649,608	-		EFB2_03499	0.60	+0.6
3,649,655	+		EFB2_03499	0.64	-0.1
3,649,656	-		EFB2_03499	0.65	+1.2
3,649,805	+		EFB2_03499	0.77	-1.9
3,649,805	+		EFB2_03499	0.77	+0.5
3,649,805	+		EFB2_03499	0.77	-2.1
3,649,806	-		EFB2_03499	0.77	-1.5
3,649,806	-		EFB2_03499	0.77	+1.3
3,649,806	-		EFB2_03499	0.77	-1.3
3,649,806	-		EFB2_03499	0.77	+0.0
3,649,806	-		EFB2_03499	0.77	-3.1
3,649,806	-		EFB2_03499	0.77	-2.0
3,649,806	-		EFB2_03499	0.77	+1.3
3,649,807	+		EFB2_03499	0.77	+0.3
3,649,807	+		EFB2_03499	0.77	-1.3
3,649,807	+		EFB2_03499	0.77	+1.4
3,649,807	+		EFB2_03499	0.77	+0.7
3,649,807	+		EFB2_03499	0.77	-0.0
3,649,807	+		EFB2_03499	0.77	+0.6
3,649,807	+		EFB2_03499	0.77	+0.8
3,649,807	+		EFB2_03499	0.77	+0.6
3,649,807	+		EFB2_03499	0.77	-2.0
3,649,807	+		EFB2_03499	0.77	+0.2
3,649,807	+		EFB2_03499	0.77	+1.2
3,649,808	-		EFB2_03499	0.77	+0.5
3,649,808	-		EFB2_03499	0.77	+0.3
3,649,808	-		EFB2_03499	0.77	+0.0
3,649,808	-		EFB2_03499	0.77	-0.2
3,649,808	-		EFB2_03499	0.77	+0.9
3,649,808	-		EFB2_03499	0.77	-0.4
3,649,808	-		EFB2_03499	0.77	+0.2
3,649,808	-		EFB2_03499	0.77	+0.5
3,649,808	-		EFB2_03499	0.77	-2.1
3,649,808	-		EFB2_03499	0.77	+1.9
3,649,808	-		EFB2_03499	0.77	-0.8
3,649,808	-		EFB2_03499	0.77	-0.1
3,649,982	+				-1.4
3,649,983	-				+0.2
3,650,003	+				-0.5
3,650,004	-				+2.1
3,650,004	-				+1.4
3,650,004	-				-1.0
3,650,046	+				-1.4
3,650,046	+				+0.4
3,650,046	+				-0.7
3,650,046	+				+2.1
3,650,047	-				-1.7
3,650,047	-				+0.6
3,650,066	+				-0.5
3,650,066	+				-0.4
3,650,066	+				+0.9
3,650,066	+				+1.1
3,650,066	+				-0.3
3,650,066	+				+2.1
3,650,066	+				+2.7
3,650,066	+				-0.0
3,650,066	+				-1.0
3,650,066	+				-1.8
3,650,066	+				-2.0
3,650,066	+				+0.7
3,650,067	-				-1.0
3,650,067	-				-2.3
3,650,067	-				+0.1
3,650,067	-				+0.3
3,650,067	-				-2.2
3,650,067	-				-2.5
3,650,067	-				-1.8
3,650,067	-				-1.0
3,650,067	-				+0.2
3,650,067	-				+0.5
3,650,067	-				+0.7
3,650,067	-				+0.5
3,650,067	-				+0.4
3,650,067	-				-0.8
3,650,067	-				-1.4
3,650,072	+				+0.8
3,650,072	+				+0.3
3,650,072	+				-2.3
3,650,072	+				+0.3
3,650,072	+				-0.4
3,650,073	-				+1.3
3,650,101	+				-1.1
3,650,104	+				+1.0
3,650,105	-				-2.6
3,650,112	-				-0.0
3,650,112	-				-0.3
3,650,118	+				-1.6
3,650,118	+				+2.1
3,650,120	+				+0.9
3,650,139	-				+2.0
3,650,139	-				+1.0
3,650,155	+				-1.3
3,650,155	+				-1.6
3,650,155	+				-1.0
3,650,155	+				-0.1
3,650,155	+				+1.2
3,650,155	+				+0.7
3,650,155	+				-1.5
3,650,155	+				+1.3
3,650,155	+				-1.3
3,650,155	+				-3.7
3,650,155	+				-1.1
3,650,155	+				-2.4
3,650,155	+				+1.9
3,650,155	+				-2.6
3,650,155	+				+3.0
3,650,155	+				-1.3
3,650,155	+				-0.9
3,650,155	+				+0.7
3,650,155	+				+0.4
3,650,155	+				-1.4
3,650,155	+				-2.8
3,650,155	+				+1.6
3,650,155	+				+0.8
3,650,156	-				+2.2
3,650,156	-				+0.4
3,650,156	-				-1.5
3,650,156	-				-2.0
3,650,156	-				+0.1
3,650,156	-				+0.3
3,650,156	-				-2.0
3,650,156	-				+2.0
3,650,156	-				+1.7
3,650,156	-				-0.7
3,650,156	-				+0.3
3,650,156	-				-0.8
3,650,156	-				-2.3
3,650,156	-				-2.5
3,650,244	+				+0.6
3,650,295	+				+3.2
3,650,296	-				-1.0
3,650,405	-		EFB2_03500	0.15	-0.5
3,650,564	+		EFB2_03500	0.32	+2.3
3,650,564	+		EFB2_03500	0.32	+0.7
3,650,699	+		EFB2_03500	0.46	+1.3
3,650,856	-		EFB2_03500	0.62	+3.9
3,651,082	+		EFB2_03500	0.86	-0.5
3,651,082	+		EFB2_03500	0.86	-0.0
3,651,082	+		EFB2_03500	0.86	+0.3
3,651,083	-		EFB2_03500	0.86	-0.3
3,651,086	+		EFB2_03500	0.86	-0.0
3,651,087	-		EFB2_03500	0.86	-0.9
3,651,121	-		EFB2_03500	0.90	-0.0
3,651,138	-				+1.3
3,651,202	+				-0.0
3,651,202	+				-2.1
3,651,202	+				-0.7
3,651,202	+				-0.3
3,651,202	+				-0.2
3,651,202	+				+0.8
3,651,203	-				+0.2
3,651,203	-				-1.0
3,651,203	-				-1.3
3,651,203	-				-2.8
3,651,203	-				+1.5
3,651,216	-				+1.6
3,651,216	-				-1.9
3,651,216	-				+0.3
3,651,216	-				+1.4
3,651,216	-				+1.3
3,651,222	+				+0.3
3,651,222	+				-0.4
3,651,222	+				-0.6
3,651,222	+				-2.3
3,651,222	+				-0.7
3,651,223	-				+0.3
3,651,223	-				-0.7
3,651,223	-				-1.7
3,651,223	-				-2.9
3,651,223	-				+1.5
3,651,223	-				+0.4
3,651,223	-				-1.2
3,651,278	+				-2.0
3,651,278	+				-1.7
3,651,278	+				-2.2
3,651,278	+				+0.9
3,651,279	-				+0.4
3,651,279	-				-0.7
3,651,279	-				+1.1
3,651,279	-				+1.2
3,651,279	-				-0.6
3,651,279	-				+1.0
3,651,279	-				-0.3
3,651,279	-				+1.1
3,651,281	+				-1.5
3,651,281	+				+0.5
3,651,281	+				+0.7
3,651,281	+				+1.4
3,651,282	-				+1.4
3,651,282	-				-0.9
3,651,282	-				+1.1
3,651,282	-				-2.5
3,651,282	-				+1.0
3,651,386	+		EFB2_03501	0.13	+0.4
3,651,386	+		EFB2_03501	0.13	+0.8
3,651,386	+		EFB2_03501	0.13	+2.5
3,651,437	+		EFB2_03501	0.17	+1.9
3,651,472	+		EFB2_03501	0.20	-0.9
3,651,472	+		EFB2_03501	0.20	+0.1
3,651,472	+		EFB2_03501	0.20	+0.4
3,651,472	+		EFB2_03501	0.20	+1.0
3,651,472	+		EFB2_03501	0.20	-1.6
3,651,472	+		EFB2_03501	0.20	+0.6
3,651,472	+		EFB2_03501	0.20	-1.2
3,651,472	+		EFB2_03501	0.20	+1.2
3,651,472	+		EFB2_03501	0.20	+2.5
3,651,472	+		EFB2_03501	0.20	+0.0
3,651,472	+		EFB2_03501	0.20	+1.6
3,651,472	+		EFB2_03501	0.20	-2.7
3,651,472	+		EFB2_03501	0.20	+0.6
3,651,472	+		EFB2_03501	0.20	-1.8
3,651,472	+		EFB2_03501	0.20	-0.2
3,651,472	+		EFB2_03501	0.20	-2.2
3,651,472	+		EFB2_03501	0.20	+0.8
3,651,472	+		EFB2_03501	0.20	-1.6
3,651,472	+		EFB2_03501	0.20	-1.2
3,651,472	+		EFB2_03501	0.20	-1.6
3,651,472	+		EFB2_03501	0.20	-0.2
3,651,472	+		EFB2_03501	0.20	-2.4
3,651,472	+		EFB2_03501	0.20	-2.5
3,651,472	+		EFB2_03501	0.20	+0.9
3,651,472	+		EFB2_03501	0.20	+1.4
3,651,472	+		EFB2_03501	0.20	+2.7
3,651,472	+		EFB2_03501	0.20	-2.1
3,651,472	+		EFB2_03501	0.20	-1.9
3,651,472	+		EFB2_03501	0.20	-1.3
3,651,472	+		EFB2_03501	0.20	+1.5
3,651,472	+		EFB2_03501	0.20	-2.0
3,651,472	+		EFB2_03501	0.20	-0.2
3,651,472	+		EFB2_03501	0.20	+0.3
3,651,472	+		EFB2_03501	0.20	+1.2
3,651,472	+		EFB2_03501	0.20	+2.6
3,651,472	+		EFB2_03501	0.20	-3.2
3,651,472	+		EFB2_03501	0.20	-2.0
3,651,472	+		EFB2_03501	0.20	+1.8
3,651,472	+		EFB2_03501	0.20	-2.0
3,651,472	+		EFB2_03501	0.20	+0.4
3,651,473	-		EFB2_03501	0.20	+0.8
3,651,473	-		EFB2_03501	0.20	+1.0
3,651,473	-		EFB2_03501	0.20	+1.4
3,651,473	-		EFB2_03501	0.20	-0.6
3,651,473	-		EFB2_03501	0.20	+0.1
3,651,473	-		EFB2_03501	0.20	-1.8
3,651,473	-		EFB2_03501	0.20	-2.0
3,651,473	-		EFB2_03501	0.20	+0.2
3,651,473	-		EFB2_03501	0.20	+0.5
3,651,473	-		EFB2_03501	0.20	+0.9
3,651,473	-		EFB2_03501	0.20	+0.2
3,651,473	-		EFB2_03501	0.20	+0.4
3,651,473	-		EFB2_03501	0.20	+0.2
3,651,473	-		EFB2_03501	0.20	+0.8
3,651,473	-		EFB2_03501	0.20	+1.0
3,651,473	-		EFB2_03501	0.20	+2.1
3,651,473	-		EFB2_03501	0.20	-0.3
3,651,473	-		EFB2_03501	0.20	-1.1
3,651,473	-		EFB2_03501	0.20	-3.5
3,651,473	-		EFB2_03501	0.20	-2.8
3,651,473	-		EFB2_03501	0.20	+0.2
3,651,473	-		EFB2_03501	0.20	-1.2
3,651,473	-		EFB2_03501	0.20	+0.1
3,651,473	-		EFB2_03501	0.20	+0.2
3,651,473	-		EFB2_03501	0.20	-0.5
3,651,473	-		EFB2_03501	0.20	+1.4
3,651,473	-		EFB2_03501	0.20	-3.8
3,651,473	-		EFB2_03501	0.20	-1.2
3,651,473	-		EFB2_03501	0.20	+2.4
3,651,473	-		EFB2_03501	0.20	-1.3
3,651,473	-		EFB2_03501	0.20	+0.4
3,651,473	-		EFB2_03501	0.20	-0.1
3,651,473	-		EFB2_03501	0.20	-0.3
3,651,473	-		EFB2_03501	0.20	+0.5
3,651,473	-		EFB2_03501	0.20	-0.8
3,651,473	-		EFB2_03501	0.20	+0.1
3,651,473	-		EFB2_03501	0.20	+3.0
3,651,473	-		EFB2_03501	0.20	-1.0
3,651,473	-		EFB2_03501	0.20	+1.3
3,651,473	-		EFB2_03501	0.20	-2.4
3,651,474	+		EFB2_03501	0.20	+1.8
3,651,474	+		EFB2_03501	0.20	+0.2
3,651,475	-		EFB2_03501	0.20	+2.3
3,651,490	+		EFB2_03501	0.22	-2.1
3,651,490	+		EFB2_03501	0.22	-1.3
3,651,490	+		EFB2_03501	0.22	-0.9
3,651,533	+		EFB2_03501	0.25	-2.0
3,651,533	+		EFB2_03501	0.25	+0.8
3,651,617	+		EFB2_03501	0.32	-1.2
3,651,622	+		EFB2_03501	0.32	-0.9
3,651,622	+		EFB2_03501	0.32	+1.9
3,651,622	+		EFB2_03501	0.32	-0.3
3,651,623	-		EFB2_03501	0.32	+1.7
3,651,623	-		EFB2_03501	0.32	+1.1
3,651,623	-		EFB2_03501	0.32	+0.1
3,651,623	-		EFB2_03501	0.32	+0.2
3,651,681	+		EFB2_03501	0.37	-0.0
3,651,735	+		EFB2_03501	0.41	+1.8
3,651,736	-		EFB2_03501	0.41	-2.1
3,651,768	-		EFB2_03501	0.44	-3.2
3,651,768	-		EFB2_03501	0.44	-2.4
3,651,833	+		EFB2_03501	0.49	-0.2
3,651,834	-		EFB2_03501	0.49	-1.2
3,651,834	-		EFB2_03501	0.49	-1.3
3,651,876	-		EFB2_03501	0.52	-2.3
3,651,891	-		EFB2_03501	0.54	-0.1
3,651,891	-		EFB2_03501	0.54	-2.4
3,651,899	+		EFB2_03501	0.54	+1.7
3,651,899	+		EFB2_03501	0.54	+0.9
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3,651,936	+		EFB2_03501	0.57	+0.8
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3,651,969	-		EFB2_03501	0.60	+1.3
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