Strain Fitness in Escherichia fergusonii Becca around EFB2_03391

Experiment: phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2)
3,540,519	-		EFB2_03389	0.73	-2.8
3,540,536	+		EFB2_03389	0.75	+0.2
3,540,536	+		EFB2_03389	0.75	+0.1
3,540,537	-		EFB2_03389	0.75	-0.2
3,540,537	-		EFB2_03389	0.75	-0.3
3,540,544	+		EFB2_03389	0.76	+0.8
3,540,544	+		EFB2_03389	0.76	+1.5
3,540,544	+		EFB2_03389	0.76	+2.0
3,540,544	+		EFB2_03389	0.76	+1.2
3,540,544	+		EFB2_03389	0.76	-0.7
3,540,544	+		EFB2_03389	0.76	+1.3
3,540,545	-		EFB2_03389	0.76	-0.9
3,540,545	-		EFB2_03389	0.76	+0.2
3,540,545	-		EFB2_03389	0.76	+0.4
3,540,545	-		EFB2_03389	0.76	+1.5
3,540,545	-		EFB2_03389	0.76	-0.3
3,540,565	+		EFB2_03389	0.79	+0.7
3,540,565	+		EFB2_03389	0.79	-0.7
3,540,566	-		EFB2_03389	0.79	-2.5
3,540,576	+		EFB2_03389	0.80	+1.0
3,540,576	+		EFB2_03389	0.80	-0.2
3,540,577	-		EFB2_03389	0.80	-1.0
3,540,612	+		EFB2_03389	0.85	+0.7
3,540,612	+		EFB2_03389	0.85	-1.8
3,540,612	+		EFB2_03389	0.85	-2.3
3,540,612	+		EFB2_03389	0.85	-0.7
3,540,612	+		EFB2_03389	0.85	+1.1
3,540,612	+		EFB2_03389	0.85	-2.4
3,540,613	-		EFB2_03389	0.85	-1.9
3,540,634	+		EFB2_03389	0.88	+1.5
3,540,634	+		EFB2_03389	0.88	+1.6
3,540,634	+		EFB2_03389	0.88	+0.4
3,540,664	+				-2.4
3,540,664	+				-2.6
3,540,664	+				-0.5
3,540,664	+				+1.3
3,540,756	+				-1.4
3,540,756	+				+0.2
3,540,756	+				+1.3
3,540,757	-				-0.3
3,540,757	-				-0.1
3,540,759	+				-2.0
3,540,760	-				-1.3
3,540,769	+				-0.3
3,540,770	-				+0.7
3,540,770	-				+1.3
3,540,770	-				-0.1
3,540,783	+				+1.0
3,540,783	+				-0.2
3,540,783	+				-1.0
3,540,784	-				-0.4
3,540,803	+				+1.0
3,540,803	+				+1.2
3,540,803	+				-0.4
3,540,803	+				-0.5
3,540,803	+				+0.2
3,540,803	+				+1.0
3,540,803	+				+1.4
3,540,803	+				+0.5
3,540,803	+				+0.2
3,540,804	-				-1.2
3,540,804	-				-1.3
3,540,804	-				-0.8
3,540,804	-				-1.5
3,540,804	-				-0.1
3,540,804	-				+1.1
3,540,811	-				-1.4
3,540,811	-				+1.1
3,540,852	+		EFB2_03390	0.11	-1.3
3,540,852	+		EFB2_03390	0.11	-2.8
3,540,852	+		EFB2_03390	0.11	-1.5
3,540,852	+		EFB2_03390	0.11	-1.2
3,540,852	+		EFB2_03390	0.11	+1.4
3,540,852	+		EFB2_03390	0.11	+2.2
3,540,853	-		EFB2_03390	0.12	-2.4
3,540,853	-		EFB2_03390	0.12	-0.0
3,540,853	-		EFB2_03390	0.12	+0.2
3,540,853	-		EFB2_03390	0.12	-1.3
3,540,853	-		EFB2_03390	0.12	-0.9
3,540,853	-		EFB2_03390	0.12	-2.2
3,540,853	-		EFB2_03390	0.12	+1.2
3,540,853	-		EFB2_03390	0.12	-0.3
3,540,853	-		EFB2_03390	0.12	+0.4
3,540,853	-		EFB2_03390	0.12	-0.1
3,540,853	-		EFB2_03390	0.12	-2.5
3,540,896	+		EFB2_03390	0.17	-1.2
3,540,896	+		EFB2_03390	0.17	-1.1
3,540,897	-		EFB2_03390	0.18	+1.6
3,540,897	-		EFB2_03390	0.18	-0.0
3,541,120	+		EFB2_03390	0.48	+0.5
3,541,120	+		EFB2_03390	0.48	+0.9
3,541,120	+		EFB2_03390	0.48	+1.9
3,541,120	+		EFB2_03390	0.48	+0.2
3,541,120	+		EFB2_03390	0.48	+1.9
3,541,120	+		EFB2_03390	0.48	-0.2
3,541,120	+		EFB2_03390	0.48	-2.6
3,541,121	-		EFB2_03390	0.48	+1.8
3,541,121	-		EFB2_03390	0.48	+0.1
3,541,121	-		EFB2_03390	0.48	-0.0
3,541,121	-		EFB2_03390	0.48	-3.1
3,541,121	-		EFB2_03390	0.48	-0.3
3,541,121	-		EFB2_03390	0.48	+0.6
3,541,122	+		EFB2_03390	0.48	-0.1
3,541,123	-		EFB2_03390	0.48	-2.6
3,541,123	-		EFB2_03390	0.48	-0.3
3,541,174	+		EFB2_03390	0.55	+0.5
3,541,174	+		EFB2_03390	0.55	-1.4
3,541,174	+		EFB2_03390	0.55	-1.4
3,541,174	+		EFB2_03390	0.55	-2.9
3,541,174	+		EFB2_03390	0.55	+1.3
3,541,174	+		EFB2_03390	0.55	+0.7
3,541,174	+		EFB2_03390	0.55	+0.8
3,541,174	+		EFB2_03390	0.55	+0.1
3,541,174	+		EFB2_03390	0.55	+0.9
3,541,174	+		EFB2_03390	0.55	-1.4
3,541,174	+		EFB2_03390	0.55	-1.1
3,541,174	+		EFB2_03390	0.55	-2.0
3,541,174	+		EFB2_03390	0.55	+0.7
3,541,174	+		EFB2_03390	0.55	+2.0
3,541,174	+		EFB2_03390	0.55	+1.4
3,541,174	+		EFB2_03390	0.55	-0.1
3,541,174	+		EFB2_03390	0.55	+0.4
3,541,174	+		EFB2_03390	0.55	+3.3
3,541,175	-		EFB2_03390	0.55	+2.3
3,541,175	-		EFB2_03390	0.55	-3.0
3,541,175	-		EFB2_03390	0.55	+0.3
3,541,175	-		EFB2_03390	0.55	-1.8
3,541,175	-		EFB2_03390	0.55	+1.6
3,541,175	-		EFB2_03390	0.55	+1.5
3,541,175	-		EFB2_03390	0.55	+0.4
3,541,175	-		EFB2_03390	0.55	-0.2
3,541,175	-		EFB2_03390	0.55	-0.4
3,541,175	-		EFB2_03390	0.55	+0.1
3,541,175	-		EFB2_03390	0.55	+1.3
3,541,175	-		EFB2_03390	0.55	-0.7
3,541,175	-		EFB2_03390	0.55	+0.9
3,541,175	-		EFB2_03390	0.55	+1.0
3,541,175	-		EFB2_03390	0.55	-1.1
3,541,175	-		EFB2_03390	0.55	+2.4
3,541,175	-		EFB2_03390	0.55	+3.8
3,541,175	-		EFB2_03390	0.55	+1.0
3,541,176	+		EFB2_03390	0.56	+0.0
3,541,176	+		EFB2_03390	0.56	+1.7
3,541,176	+		EFB2_03390	0.56	-0.4
3,541,176	+		EFB2_03390	0.56	+0.2
3,541,177	-		EFB2_03390	0.56	-2.5
3,541,177	-		EFB2_03390	0.56	+0.9
3,541,177	-		EFB2_03390	0.56	+2.4
3,541,206	+		EFB2_03390	0.60	+1.1
3,541,206	+		EFB2_03390	0.60	-0.3
3,541,206	+		EFB2_03390	0.60	-0.0
3,541,207	-		EFB2_03390	0.60	+0.4
3,541,207	-		EFB2_03390	0.60	+0.2
3,541,207	-		EFB2_03390	0.60	-3.1
3,541,207	-		EFB2_03390	0.60	-0.6
3,541,252	+		EFB2_03390	0.66	-2.6
3,541,360	-		EFB2_03390	0.81	+1.2
3,541,360	-		EFB2_03390	0.81	-0.7
3,541,422	-		EFB2_03390	0.89	+0.7
3,541,422	-		EFB2_03390	0.89	+0.7
3,541,444	-				-1.0
3,541,444	-				-1.5
3,541,446	+				-1.4
3,541,446	+				-1.8
3,541,446	+				-0.4
3,541,446	+				+0.8
3,541,446	+				-2.4
3,541,446	+				+0.0
3,541,446	+				+1.7
3,541,446	+				+0.1
3,541,446	+				+0.6
3,541,447	-				+0.7
3,541,447	-				-0.5
3,541,447	-				-2.3
3,541,447	-				-1.1
3,541,447	-				-1.8
3,541,519	+				-1.2
3,541,519	+				-0.3
3,541,519	+				+1.4
3,541,519	+				-1.5
3,541,520	-				+0.2
3,541,520	-				-3.4
3,541,520	-				+1.7
3,541,520	-				-1.0
3,541,520	-				-2.7
3,541,520	-				-1.4
3,541,520	-				-1.9
3,541,520	-				-2.4
3,541,532	+				-0.8
3,541,532	+				-2.6
3,541,532	+				-1.0
3,541,532	+				+0.6
3,541,532	+				-2.1
3,541,532	+				+0.2
3,541,532	+				-0.3
3,541,533	-				+0.7
3,541,533	-				+1.7
3,541,533	-				-0.5
3,541,533	-				+0.4
3,541,533	-				-2.1
3,541,533	-				-3.2
3,541,533	-				-2.6
3,541,625	+		EFB2_03391	0.14	+1.2
3,541,625	+		EFB2_03391	0.14	+2.5
3,541,625	+		EFB2_03391	0.14	-0.4
3,541,625	+		EFB2_03391	0.14	+0.0
3,541,625	+		EFB2_03391	0.14	-1.5
3,541,625	+		EFB2_03391	0.14	+0.3
3,541,625	+		EFB2_03391	0.14	-1.8
3,541,625	+		EFB2_03391	0.14	+0.9
3,541,625	+		EFB2_03391	0.14	+0.5
3,541,625	+		EFB2_03391	0.14	-0.2
3,541,626	-		EFB2_03391	0.14	-3.4
3,541,626	-		EFB2_03391	0.14	+0.2
3,541,626	-		EFB2_03391	0.14	+0.0
3,541,626	-		EFB2_03391	0.14	+1.6
3,541,626	-		EFB2_03391	0.14	-1.6
3,541,626	-		EFB2_03391	0.14	-1.6
3,541,626	-		EFB2_03391	0.14	+2.0
3,541,626	-		EFB2_03391	0.14	-0.3
3,541,626	-		EFB2_03391	0.14	+1.1
3,541,626	-		EFB2_03391	0.14	-2.3
3,541,626	-		EFB2_03391	0.14	+1.9
3,541,626	-		EFB2_03391	0.14	-1.6
3,541,626	-		EFB2_03391	0.14	-1.3
3,541,626	-		EFB2_03391	0.14	-2.7
3,541,626	-		EFB2_03391	0.14	-0.8
3,541,626	-		EFB2_03391	0.14	+0.3
3,541,629	+		EFB2_03391	0.15	-1.4
3,541,629	+		EFB2_03391	0.15	-0.7
3,541,629	+		EFB2_03391	0.15	+1.0
3,541,629	+		EFB2_03391	0.15	-2.0
3,541,629	+		EFB2_03391	0.15	+1.9
3,541,629	+		EFB2_03391	0.15	-0.4
3,541,629	+		EFB2_03391	0.15	-0.6
3,541,629	+		EFB2_03391	0.15	+0.3
3,541,629	+		EFB2_03391	0.15	-0.5
3,541,629	+		EFB2_03391	0.15	-2.5
3,541,629	+		EFB2_03391	0.15	-2.3
3,541,629	+		EFB2_03391	0.15	-2.8
3,541,629	+		EFB2_03391	0.15	-0.7
3,541,629	+		EFB2_03391	0.15	-0.6
3,541,629	+		EFB2_03391	0.15	+1.3
3,541,629	+		EFB2_03391	0.15	+0.0
3,541,629	+		EFB2_03391	0.15	-0.1
3,541,629	+		EFB2_03391	0.15	+1.7
3,541,629	+		EFB2_03391	0.15	+0.4
3,541,629	+		EFB2_03391	0.15	-1.3
3,541,629	+		EFB2_03391	0.15	-2.4
3,541,629	+		EFB2_03391	0.15	-2.4
3,541,629	+		EFB2_03391	0.15	+0.2
3,541,629	+		EFB2_03391	0.15	+0.6
3,541,630	-		EFB2_03391	0.15	-0.2
3,541,630	-		EFB2_03391	0.15	-2.0
3,541,630	-		EFB2_03391	0.15	+0.8
3,541,630	-		EFB2_03391	0.15	+0.2
3,541,630	-		EFB2_03391	0.15	-1.2
3,541,630	-		EFB2_03391	0.15	+0.9
3,541,630	-		EFB2_03391	0.15	+1.6
3,541,630	-		EFB2_03391	0.15	-1.4
3,541,630	-		EFB2_03391	0.15	+1.4
3,541,630	-		EFB2_03391	0.15	+1.5
3,541,630	-		EFB2_03391	0.15	-1.5
3,541,630	-		EFB2_03391	0.15	+0.9
3,541,630	-		EFB2_03391	0.15	+0.8
3,541,630	-		EFB2_03391	0.15	+1.0
3,541,630	-		EFB2_03391	0.15	-0.7
3,541,630	-		EFB2_03391	0.15	+1.0
3,541,630	-		EFB2_03391	0.15	+3.3
3,541,630	-		EFB2_03391	0.15	+1.3
3,541,630	-		EFB2_03391	0.15	+0.4
3,541,630	-		EFB2_03391	0.15	-1.4
3,541,644	+		EFB2_03391	0.16	+0.8
3,541,644	+		EFB2_03391	0.16	+1.1
3,541,645	-		EFB2_03391	0.16	-0.2
3,541,645	-		EFB2_03391	0.16	-0.1
3,541,645	-		EFB2_03391	0.16	-0.8
3,541,653	+		EFB2_03391	0.17	-1.6
3,541,653	+		EFB2_03391	0.17	+2.8
3,541,653	+		EFB2_03391	0.17	-0.4
3,541,710	+		EFB2_03391	0.23	-1.4
3,541,711	-		EFB2_03391	0.23	+0.9
3,541,750	+		EFB2_03391	0.28	+1.5
3,541,750	+		EFB2_03391	0.28	+1.7
3,541,750	+		EFB2_03391	0.28	-0.7
3,541,751	-		EFB2_03391	0.28	+0.6
3,541,751	-		EFB2_03391	0.28	-3.2
3,541,751	-		EFB2_03391	0.28	-0.5
3,541,751	-		EFB2_03391	0.28	+0.5
3,541,751	-		EFB2_03391	0.28	-1.5
3,541,777	+		EFB2_03391	0.31	-2.3
3,541,792	+		EFB2_03391	0.32	+1.3
3,541,792	+		EFB2_03391	0.32	-1.6
3,541,793	-		EFB2_03391	0.32	+0.8
3,541,793	-		EFB2_03391	0.32	+0.2
3,541,793	-		EFB2_03391	0.32	-0.8
3,541,793	-		EFB2_03391	0.32	+1.8
3,541,812	+		EFB2_03391	0.34	+0.3
3,541,824	+		EFB2_03391	0.36	+0.0
3,541,824	+		EFB2_03391	0.36	+5.7
3,541,824	+		EFB2_03391	0.36	-0.7
3,541,824	+		EFB2_03391	0.36	-2.7
3,541,824	+		EFB2_03391	0.36	+1.1
3,541,824	+		EFB2_03391	0.36	+0.0
3,541,824	+		EFB2_03391	0.36	+0.4
3,541,825	-		EFB2_03391	0.36	-0.3
3,541,825	-		EFB2_03391	0.36	-1.2
3,541,825	-		EFB2_03391	0.36	+0.4
3,541,825	-		EFB2_03391	0.36	+0.2
3,541,825	-		EFB2_03391	0.36	-0.6
3,541,825	-		EFB2_03391	0.36	-0.9
3,541,825	-		EFB2_03391	0.36	-0.3
3,541,825	-		EFB2_03391	0.36	+0.2
3,541,825	-		EFB2_03391	0.36	+0.1
3,541,825	-		EFB2_03391	0.36	-3.7
3,541,880	+		EFB2_03391	0.42	-3.3
3,541,880	+		EFB2_03391	0.42	+0.5
3,541,880	+		EFB2_03391	0.42	+2.3
3,541,881	-		EFB2_03391	0.42	+1.5
3,541,948	-		EFB2_03391	0.49	+0.9
3,541,948	-		EFB2_03391	0.49	-3.6
3,541,996	+		EFB2_03391	0.54	+2.4
3,541,996	+		EFB2_03391	0.54	+1.1
3,541,997	-		EFB2_03391	0.54	+1.0
3,542,070	+		EFB2_03391	0.62	-2.8
3,542,070	+		EFB2_03391	0.62	-2.4
3,542,070	+		EFB2_03391	0.62	-0.0
3,542,070	+		EFB2_03391	0.62	+1.5
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