Strain Fitness in Escherichia fergusonii Becca around EFB2_03354

Experiment: phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2)
3,509,835	-		EFB2_03352	0.86	-2.7
3,509,835	-		EFB2_03352	0.86	-2.7
3,509,974	+				+0.8
3,510,001	+				-1.0
3,510,001	+				-1.5
3,510,001	+				-1.4
3,510,001	+				-1.5
3,510,002	-				-2.7
3,510,002	-				-3.1
3,510,002	-				-0.9
3,510,002	-				-2.7
3,510,005	+				-2.4
3,510,005	+				+3.7
3,510,006	-				+1.2
3,510,006	-				-2.0
3,510,006	-				+0.4
3,510,006	-				+1.3
3,510,006	-				+1.0
3,510,011	-				-0.3
3,510,022	+				-0.7
3,510,023	-				-1.5
3,510,023	-				-1.6
3,510,033	+				+0.1
3,510,033	+				-2.2
3,510,033	+				-1.3
3,510,033	+				-3.0
3,510,034	-				+0.7
3,510,034	-				+0.1
3,510,034	-				-2.0
3,510,034	-				+1.5
3,510,035	+				+1.5
3,510,036	-				-1.0
3,510,036	-				-1.3
3,510,066	+				-2.2
3,510,066	+				-0.1
3,510,067	-				+0.8
3,510,071	+				-0.2
3,510,072	-				-0.5
3,510,082	+				-1.4
3,510,082	+				-1.6
3,510,094	+				+1.3
3,510,095	-				+1.1
3,510,138	+				-0.3
3,510,148	-				-1.5
3,510,153	+				+0.3
3,510,153	+				+0.4
3,510,153	+				+0.2
3,510,153	+				-1.8
3,510,154	-				+0.3
3,510,154	-				+0.4
3,510,154	-				+0.4
3,510,154	-				-1.0
3,510,154	-				+1.8
3,510,154	-				-2.1
3,510,170	-				+0.8
3,510,174	-				+2.0
3,510,196	-				-0.8
3,510,217	+				-2.0
3,510,217	+				+0.2
3,510,218	-				+0.1
3,510,218	-				-0.9
3,510,218	-				+2.0
3,510,230	+				-1.0
3,510,230	+				-0.8
3,510,230	+				-2.1
3,510,230	+				+0.1
3,510,230	+				-2.1
3,510,231	-				-0.7
3,510,231	-				-0.2
3,510,231	-				+0.4
3,510,231	-				-1.4
3,510,231	-				-2.8
3,510,232	+				-1.0
3,510,232	+				+0.9
3,510,232	+				-0.3
3,510,232	+				+1.1
3,510,232	+				-1.3
3,510,232	+				+1.3
3,510,232	+				-1.7
3,510,232	+				-2.4
3,510,232	+				-1.9
3,510,232	+				-0.3
3,510,232	+				+1.4
3,510,232	+				-0.3
3,510,232	+				-0.1
3,510,232	+				-0.3
3,510,232	+				+1.5
3,510,233	-				+1.0
3,510,233	-				+2.3
3,510,233	-				+0.2
3,510,233	-				-0.5
3,510,233	-				+1.9
3,510,233	-				+0.7
3,510,233	-				-2.1
3,510,233	-				-0.3
3,510,233	-				+1.8
3,510,233	-				-0.9
3,510,233	-				+0.7
3,510,233	-				+0.6
3,510,233	-				+0.5
3,510,233	-				+1.2
3,510,233	-				-1.1
3,510,233	-				+0.1
3,510,233	-				+0.4
3,510,233	-				-3.5
3,510,233	-				-2.5
3,510,233	-				+2.6
3,510,233	-				+2.1
3,510,233	-				+0.7
3,510,233	-				-0.7
3,510,233	-				+0.7
3,510,233	-				-1.5
3,510,264	+				-0.1
3,510,273	+				-1.8
3,510,273	+				-0.9
3,510,273	+				+2.5
3,510,273	+				-1.9
3,510,274	-				+0.9
3,510,274	-				+0.0
3,510,274	-				+0.6
3,510,274	-				-2.7
3,510,283	-				-2.5
3,510,296	+				-0.1
3,510,297	-				+0.7
3,510,322	+				-1.0
3,510,322	+				+1.4
3,510,322	+				-1.5
3,510,322	+				+1.3
3,510,340	+		EFB2_03353	0.11	-0.1
3,510,341	-		EFB2_03353	0.12	+0.3
3,510,341	-		EFB2_03353	0.12	+0.5
3,510,341	-		EFB2_03353	0.12	-1.9
3,510,393	-		EFB2_03353	0.25	+1.6
3,510,430	+		EFB2_03353	0.35	+1.0
3,510,430	+		EFB2_03353	0.35	+1.5
3,510,431	-		EFB2_03353	0.35	-1.1
3,510,431	-		EFB2_03353	0.35	-1.6
3,510,464	+		EFB2_03353	0.44	+1.0
3,510,465	-		EFB2_03353	0.44	+2.3
3,510,465	-		EFB2_03353	0.44	+1.0
3,510,465	-		EFB2_03353	0.44	+0.1
3,510,473	+		EFB2_03353	0.46	+0.4
3,510,474	-		EFB2_03353	0.46	+2.8
3,510,484	+		EFB2_03353	0.49	+0.4
3,510,485	-		EFB2_03353	0.49	+0.1
3,510,485	-		EFB2_03353	0.49	-0.6
3,510,581	+		EFB2_03353	0.75	+1.2
3,510,581	+		EFB2_03353	0.75	-2.1
3,510,581	+		EFB2_03353	0.75	-2.0
3,510,582	-		EFB2_03353	0.75	-1.0
3,510,582	-		EFB2_03353	0.75	-1.0
3,510,582	-		EFB2_03353	0.75	-1.0
3,510,582	-		EFB2_03353	0.75	-1.4
3,510,609	-		EFB2_03353	0.82	+0.3
3,510,609	-		EFB2_03353	0.82	+0.7
3,510,616	+		EFB2_03353	0.84	-0.2
3,510,616	+		EFB2_03353	0.84	+0.2
3,510,616	+		EFB2_03353	0.84	+2.3
3,510,616	+		EFB2_03353	0.84	-0.1
3,510,665	+				+2.8
3,510,665	+				-1.3
3,510,676	-				-1.4
3,510,676	-				-1.4
3,510,676	-				+2.3
3,510,695	+				+0.7
3,510,695	+				+0.6
3,510,736	+				+3.5
3,510,736	+				+1.0
3,510,736	+				+1.6
3,510,737	-				+1.2
3,510,737	-				+0.5
3,510,745	+				+1.1
3,510,745	+				-1.8
3,510,745	+				-3.4
3,510,745	+				+0.7
3,510,745	+				-0.1
3,510,746	-				-0.5
3,510,756	-				-1.3
3,510,762	-				-2.1
3,510,762	-				+1.8
3,510,762	-				-0.4
3,510,762	-				-0.9
3,510,771	+				-1.6
3,510,771	+				-0.2
3,510,771	+				+2.3
3,510,772	-				+1.5
3,510,772	-				-0.6
3,510,772	-				-1.8
3,510,772	-				+0.1
3,510,772	-				+0.7
3,510,776	-				-2.9
3,510,835	+				-0.7
3,510,836	-				+0.0
3,510,836	-				-0.3
3,510,836	-				-0.7
3,510,836	-				+0.9
3,510,836	-				-0.2
3,510,836	-				-0.9
3,510,836	-				-1.5
3,510,836	-				-1.8
3,510,838	+				-1.7
3,510,838	+				-0.5
3,510,838	+				+1.0
3,510,838	+				-1.4
3,510,838	+				+1.0
3,510,838	+				+0.4
3,510,838	+				+1.9
3,510,839	-				+1.8
3,510,839	-				+1.1
3,510,839	-				+1.3
3,510,839	-				-2.4
3,510,839	-				-1.6
3,510,839	-				+1.7
3,510,839	-				+0.2
3,510,839	-				+0.3
3,510,839	-				-0.1
3,510,839	-				-2.2
3,510,839	-				+1.9
3,510,839	-				-0.5
3,510,839	-				+1.9
3,510,857	+				-2.8
3,510,857	+				+1.4
3,510,857	+				+1.7
3,510,857	+				+0.7
3,510,857	+				-2.6
3,510,857	+				+0.8
3,510,857	+				-1.1
3,510,857	+				-3.5
3,510,857	+				+0.7
3,510,857	+				+1.3
3,510,857	+				+1.4
3,510,857	+				-2.1
3,510,857	+				+1.0
3,510,858	-				+1.4
3,510,858	-				+1.3
3,510,858	-				-2.1
3,510,858	-				+0.3
3,510,858	-				+0.2
3,510,883	+				-1.8
3,510,884	-				-1.2
3,510,884	-				+2.6
3,510,884	-				+0.6
3,510,884	-				-0.9
3,510,884	-				+1.1
3,510,891	+		EFB2_03354	0.11	-0.1
3,510,891	+		EFB2_03354	0.11	-2.1
3,510,891	+		EFB2_03354	0.11	-1.5
3,510,892	-		EFB2_03354	0.11	+1.5
3,510,892	-		EFB2_03354	0.11	-1.8
3,510,892	-		EFB2_03354	0.11	-0.5
3,510,949	+		EFB2_03354	0.17	-1.8
3,510,949	+		EFB2_03354	0.17	+0.5
3,510,949	+		EFB2_03354	0.17	-0.3
3,510,949	+		EFB2_03354	0.17	+0.7
3,510,949	+		EFB2_03354	0.17	+1.6
3,510,949	+		EFB2_03354	0.17	-1.9
3,510,949	+		EFB2_03354	0.17	-0.5
3,510,949	+		EFB2_03354	0.17	+0.3
3,510,950	-		EFB2_03354	0.17	-1.0
3,510,950	-		EFB2_03354	0.17	-1.2
3,510,950	-		EFB2_03354	0.17	-1.4
3,510,950	-		EFB2_03354	0.17	-0.6
3,510,950	-		EFB2_03354	0.17	+2.5
3,510,950	-		EFB2_03354	0.17	-0.5
3,510,950	-		EFB2_03354	0.17	-0.4
3,510,950	-		EFB2_03354	0.17	-2.2
3,510,950	-		EFB2_03354	0.17	+0.3
3,510,950	-		EFB2_03354	0.17	-2.0
3,510,950	-		EFB2_03354	0.17	+0.5
3,510,950	-		EFB2_03354	0.17	+0.5
3,510,950	-		EFB2_03354	0.17	+1.5
3,510,950	-		EFB2_03354	0.17	-2.0
3,510,962	-		EFB2_03354	0.18	-0.4
3,511,041	+		EFB2_03354	0.27	+0.1
3,511,041	+		EFB2_03354	0.27	+0.6
3,511,042	-		EFB2_03354	0.27	+0.3
3,511,042	-		EFB2_03354	0.27	-0.9
3,511,042	-		EFB2_03354	0.27	+1.2
3,511,093	+		EFB2_03354	0.32	-3.2
3,511,093	+		EFB2_03354	0.32	-2.2
3,511,093	+		EFB2_03354	0.32	-0.3
3,511,094	-		EFB2_03354	0.32	+1.9
3,511,094	-		EFB2_03354	0.32	-1.3
3,511,096	+		EFB2_03354	0.32	-2.4
3,511,096	+		EFB2_03354	0.32	-0.5
3,511,096	+		EFB2_03354	0.32	-1.0
3,511,096	+		EFB2_03354	0.32	+1.7
3,511,097	-		EFB2_03354	0.32	-1.0
3,511,097	-		EFB2_03354	0.32	-2.5
3,511,119	+		EFB2_03354	0.35	-1.6
3,511,120	-		EFB2_03354	0.35	+1.0
3,511,120	-		EFB2_03354	0.35	-1.5
3,511,195	+		EFB2_03354	0.43	+0.7
3,511,195	+		EFB2_03354	0.43	+2.0
3,511,195	+		EFB2_03354	0.43	-0.0
3,511,196	-		EFB2_03354	0.43	-1.0
3,511,196	-		EFB2_03354	0.43	-0.8
3,511,196	-		EFB2_03354	0.43	+2.5
3,511,196	-		EFB2_03354	0.43	-1.4
3,511,197	+		EFB2_03354	0.43	+0.9
3,511,197	+		EFB2_03354	0.43	-0.0
3,511,197	+		EFB2_03354	0.43	+1.0
3,511,198	-		EFB2_03354	0.43	-2.2
3,511,198	-		EFB2_03354	0.43	-0.9
3,511,198	-		EFB2_03354	0.43	+0.1
3,511,212	+		EFB2_03354	0.45	+2.0
3,511,212	+		EFB2_03354	0.45	-1.0
3,511,213	-		EFB2_03354	0.45	+0.4
3,511,300	+		EFB2_03354	0.54	-0.3
3,511,300	+		EFB2_03354	0.54	-2.0
3,511,301	-		EFB2_03354	0.54	-2.6
3,511,301	-		EFB2_03354	0.54	+1.1
3,511,301	-		EFB2_03354	0.54	+1.1
3,511,303	+		EFB2_03354	0.54	-1.4
3,511,304	-		EFB2_03354	0.54	-0.3
3,511,304	-		EFB2_03354	0.54	+0.3
3,511,318	+		EFB2_03354	0.56	+2.6
3,511,318	+		EFB2_03354	0.56	-1.3
3,511,321	+		EFB2_03354	0.56	+1.5
3,511,321	+		EFB2_03354	0.56	+1.1
3,511,321	+		EFB2_03354	0.56	+2.9
3,511,322	-		EFB2_03354	0.56	+2.1
3,511,322	-		EFB2_03354	0.56	-1.7
3,511,322	-		EFB2_03354	0.56	-0.4
3,511,362	+		EFB2_03354	0.61	+1.0
3,511,362	+		EFB2_03354	0.61	-0.8
3,511,411	+		EFB2_03354	0.66	+0.1
3,511,411	+		EFB2_03354	0.66	-1.7
3,511,411	+		EFB2_03354	0.66	-1.4
3,511,411	+		EFB2_03354	0.66	-2.4
3,511,411	+		EFB2_03354	0.66	+1.6
3,511,411	+		EFB2_03354	0.66	-2.1
3,511,412	-		EFB2_03354	0.66	+0.1
3,511,412	-		EFB2_03354	0.66	-0.3
3,511,412	-		EFB2_03354	0.66	+1.1
3,511,412	-		EFB2_03354	0.66	+1.3
3,511,425	+		EFB2_03354	0.67	+1.7
3,511,426	-		EFB2_03354	0.67	-1.0
3,511,521	+		EFB2_03354	0.77	+0.8
3,511,521	+		EFB2_03354	0.77	+2.3
3,511,521	+		EFB2_03354	0.77	-0.9
3,511,521	+		EFB2_03354	0.77	-1.7
3,511,521	+		EFB2_03354	0.77	+0.1
3,511,521	+		EFB2_03354	0.77	-1.5
3,511,521	+		EFB2_03354	0.77	+0.5
3,511,521	+		EFB2_03354	0.77	-1.9
3,511,521	+		EFB2_03354	0.77	+0.2
3,511,521	+		EFB2_03354	0.77	+0.8
3,511,521	+		EFB2_03354	0.77	-2.4
3,511,521	+		EFB2_03354	0.77	-1.8
3,511,521	+		EFB2_03354	0.77	+0.4
3,511,521	+		EFB2_03354	0.77	-1.5
3,511,521	+		EFB2_03354	0.77	-2.5
3,511,521	+		EFB2_03354	0.77	-0.3
3,511,521	+		EFB2_03354	0.77	+0.3
3,511,521	+		EFB2_03354	0.77	+0.3
3,511,521	+		EFB2_03354	0.77	+0.3
3,511,521	+		EFB2_03354	0.77	-0.4
3,511,521	+		EFB2_03354	0.77	+1.9
3,511,521	+		EFB2_03354	0.77	-0.7
3,511,521	+		EFB2_03354	0.77	-0.0
3,511,521	+		EFB2_03354	0.77	+0.4
3,511,522	-		EFB2_03354	0.78	-0.4
3,511,522	-		EFB2_03354	0.78	+0.3
3,511,522	-		EFB2_03354	0.78	+0.1
3,511,522	-		EFB2_03354	0.78	+0.6
3,511,522	-		EFB2_03354	0.78	-0.3
3,511,522	-		EFB2_03354	0.78	-0.2
3,511,522	-		EFB2_03354	0.78	+0.7
3,511,522	-		EFB2_03354	0.78	+0.3
3,511,522	-		EFB2_03354	0.78	-1.9
3,511,522	-		EFB2_03354	0.78	+0.1
3,511,522	-		EFB2_03354	0.78	-0.6
3,511,522	-		EFB2_03354	0.78	-1.9
3,511,522	-		EFB2_03354	0.78	+1.2
3,511,522	-		EFB2_03354	0.78	-2.9
3,511,522	-		EFB2_03354	0.78	-0.2
3,511,522	-		EFB2_03354	0.78	+0.2
3,511,522	-		EFB2_03354	0.78	-2.7
3,511,522	-		EFB2_03354	0.78	+1.7
3,511,522	-		EFB2_03354	0.78	+0.0
3,511,522	-		EFB2_03354	0.78	-1.2
3,511,522	-		EFB2_03354	0.78	+0.7
3,511,522	-		EFB2_03354	0.78	-0.0
3,511,522	-		EFB2_03354	0.78	+2.2
3,511,522	-		EFB2_03354	0.78	+0.6
3,511,522	-		EFB2_03354	0.78	+0.5
3,511,522	-		EFB2_03354	0.78	-0.5
3,511,522	-		EFB2_03354	0.78	+0.3
3,511,522	-		EFB2_03354	0.78	+1.6
3,511,522	-		EFB2_03354	0.78	-1.3
3,511,522	-		EFB2_03354	0.78	+1.8
3,511,522	-		EFB2_03354	0.78	-0.9
3,511,596	+		EFB2_03354	0.85	-1.7
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3,512,496	-				-1.4
3,512,496	-				+1.1
3,512,500	+				-1.0
3,512,500	+				-0.1
3,512,501	-				+0.8
3,512,518	+				-2.8
3,512,519	-				-0.3
3,512,565	+				+1.3
3,512,565	+				+0.3
3,512,565	+				+0.2
3,512,565	+				-2.8
3,512,565	+				-0.7
3,512,565	+				-0.1
3,512,566	-				+0.9
3,512,566	-				-2.0
3,512,566	-				+0.0
3,512,566	-				+0.9
3,512,594	+		EFB2_03356	0.10	-1.8
3,512,595	-		EFB2_03356	0.10	-0.0
3,512,595	-		EFB2_03356	0.10	+1.2
3,512,595	-		EFB2_03356	0.10	-2.7
3,512,595	-		EFB2_03356	0.10	-2.1
3,512,693	+		EFB2_03356	0.20	-0.6