Strain Fitness in Escherichia fergusonii Becca around EFB2_03348

Experiment: phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2)
3,503,594	+				+1.4
3,503,608	+				-1.7
3,503,608	+				-0.0
3,503,608	+				-1.8
3,503,609	-				+1.7
3,503,643	-				-0.9
3,503,651	+				-2.0
3,503,651	+				-2.2
3,503,651	+				+2.1
3,503,652	-		EFB2_03347	0.10	+0.3
3,503,652	-		EFB2_03347	0.10	+1.1
3,503,657	+		EFB2_03347	0.11	+0.7
3,503,657	+		EFB2_03347	0.11	-1.6
3,503,657	+		EFB2_03347	0.11	+1.1
3,503,657	+		EFB2_03347	0.11	+0.8
3,503,658	-		EFB2_03347	0.11	-0.6
3,503,658	-		EFB2_03347	0.11	-0.3
3,503,658	-		EFB2_03347	0.11	+1.0
3,503,668	+		EFB2_03347	0.12	+0.6
3,503,668	+		EFB2_03347	0.12	+2.3
3,503,668	+		EFB2_03347	0.12	-1.3
3,503,668	+		EFB2_03347	0.12	-0.4
3,503,669	-		EFB2_03347	0.12	-2.2
3,503,690	-		EFB2_03347	0.14	-0.7
3,503,835	+		EFB2_03347	0.28	+2.6
3,503,836	-		EFB2_03347	0.28	+0.7
3,503,838	+		EFB2_03347	0.28	+1.8
3,503,839	-		EFB2_03347	0.28	+0.6
3,503,906	+		EFB2_03347	0.35	+2.7
3,503,912	+		EFB2_03347	0.36	-1.1
3,503,912	+		EFB2_03347	0.36	+0.0
3,503,955	+		EFB2_03347	0.40	-1.3
3,503,956	-		EFB2_03347	0.40	+0.6
3,503,956	-		EFB2_03347	0.40	-0.1
3,503,956	-		EFB2_03347	0.40	-0.8
3,504,078	+		EFB2_03347	0.52	+1.0
3,504,078	+		EFB2_03347	0.52	-0.5
3,504,078	+		EFB2_03347	0.52	+1.0
3,504,156	+		EFB2_03347	0.60	+0.1
3,504,156	+		EFB2_03347	0.60	-1.3
3,504,156	+		EFB2_03347	0.60	-1.1
3,504,156	+		EFB2_03347	0.60	+2.2
3,504,156	+		EFB2_03347	0.60	+0.5
3,504,156	+		EFB2_03347	0.60	-2.0
3,504,156	+		EFB2_03347	0.60	+0.5
3,504,156	+		EFB2_03347	0.60	-0.3
3,504,156	+		EFB2_03347	0.60	+0.8
3,504,156	+		EFB2_03347	0.60	+0.7
3,504,156	+		EFB2_03347	0.60	+1.2
3,504,156	+		EFB2_03347	0.60	+0.4
3,504,156	+		EFB2_03347	0.60	-0.0
3,504,156	+		EFB2_03347	0.60	-2.3
3,504,156	+		EFB2_03347	0.60	-0.3
3,504,156	+		EFB2_03347	0.60	-1.3
3,504,156	+		EFB2_03347	0.60	-1.9
3,504,156	+		EFB2_03347	0.60	+0.2
3,504,156	+		EFB2_03347	0.60	+3.0
3,504,157	-		EFB2_03347	0.60	+0.4
3,504,157	-		EFB2_03347	0.60	+1.0
3,504,157	-		EFB2_03347	0.60	-1.7
3,504,157	-		EFB2_03347	0.60	-0.8
3,504,157	-		EFB2_03347	0.60	-2.3
3,504,157	-		EFB2_03347	0.60	+2.4
3,504,157	-		EFB2_03347	0.60	+3.1
3,504,157	-		EFB2_03347	0.60	+0.3
3,504,157	-		EFB2_03347	0.60	+0.4
3,504,157	-		EFB2_03347	0.60	+2.2
3,504,157	-		EFB2_03347	0.60	+1.1
3,504,157	-		EFB2_03347	0.60	+1.3
3,504,157	-		EFB2_03347	0.60	+1.0
3,504,157	-		EFB2_03347	0.60	-0.3
3,504,157	-		EFB2_03347	0.60	+2.4
3,504,175	+		EFB2_03347	0.61	+1.1
3,504,175	+		EFB2_03347	0.61	+0.3
3,504,176	-		EFB2_03347	0.62	-0.0
3,504,230	+		EFB2_03347	0.67	-0.7
3,504,231	-		EFB2_03347	0.67	+1.3
3,504,246	+		EFB2_03347	0.68	+1.2
3,504,246	+		EFB2_03347	0.68	+1.5
3,504,246	+		EFB2_03347	0.68	-0.2
3,504,246	+		EFB2_03347	0.68	+0.6
3,504,246	+		EFB2_03347	0.68	-0.5
3,504,246	+		EFB2_03347	0.68	+0.8
3,504,246	+		EFB2_03347	0.68	+1.9
3,504,246	+		EFB2_03347	0.68	-1.9
3,504,247	-		EFB2_03347	0.69	+1.3
3,504,247	-		EFB2_03347	0.69	+0.4
3,504,247	-		EFB2_03347	0.69	+0.8
3,504,247	-		EFB2_03347	0.69	+0.3
3,504,247	-		EFB2_03347	0.69	+1.5
3,504,247	-		EFB2_03347	0.69	-0.5
3,504,247	-		EFB2_03347	0.69	-0.7
3,504,247	-		EFB2_03347	0.69	+2.0
3,504,247	-		EFB2_03347	0.69	+0.8
3,504,256	+		EFB2_03347	0.69	+1.0
3,504,256	+		EFB2_03347	0.69	+0.8
3,504,256	+		EFB2_03347	0.69	+1.9
3,504,256	+		EFB2_03347	0.69	+0.4
3,504,256	+		EFB2_03347	0.69	-1.9
3,504,257	-		EFB2_03347	0.70	-1.3
3,504,257	-		EFB2_03347	0.70	+0.3
3,504,257	-		EFB2_03347	0.70	-1.3
3,504,257	-		EFB2_03347	0.70	+1.3
3,504,316	+		EFB2_03347	0.75	+1.3
3,504,316	+		EFB2_03347	0.75	+0.0
3,504,316	+		EFB2_03347	0.75	+1.5
3,504,316	+		EFB2_03347	0.75	-1.6
3,504,316	+		EFB2_03347	0.75	+1.0
3,504,316	+		EFB2_03347	0.75	+0.7
3,504,316	+		EFB2_03347	0.75	+1.2
3,504,316	+		EFB2_03347	0.75	+0.9
3,504,317	-		EFB2_03347	0.75	+0.9
3,504,317	-		EFB2_03347	0.75	+1.3
3,504,317	-		EFB2_03347	0.75	+1.5
3,504,317	-		EFB2_03347	0.75	+1.6
3,504,317	-		EFB2_03347	0.75	-1.0
3,504,317	-		EFB2_03347	0.75	+0.5
3,504,324	+		EFB2_03347	0.76	+0.4
3,504,324	+		EFB2_03347	0.76	+1.6
3,504,324	+		EFB2_03347	0.76	+1.3
3,504,324	+		EFB2_03347	0.76	+2.0
3,504,324	+		EFB2_03347	0.76	+0.0
3,504,324	+		EFB2_03347	0.76	+0.1
3,504,324	+		EFB2_03347	0.76	+1.1
3,504,324	+		EFB2_03347	0.76	-1.5
3,504,324	+		EFB2_03347	0.76	+1.5
3,504,324	+		EFB2_03347	0.76	+2.1
3,504,324	+		EFB2_03347	0.76	+1.9
3,504,325	-		EFB2_03347	0.76	+0.3
3,504,325	-		EFB2_03347	0.76	+0.7
3,504,325	-		EFB2_03347	0.76	+0.8
3,504,325	-		EFB2_03347	0.76	-1.0
3,504,325	-		EFB2_03347	0.76	+2.1
3,504,325	-		EFB2_03347	0.76	+2.0
3,504,325	-		EFB2_03347	0.76	+1.6
3,504,325	-		EFB2_03347	0.76	-1.4
3,504,325	-		EFB2_03347	0.76	+0.1
3,504,325	-		EFB2_03347	0.76	+1.2
3,504,325	-		EFB2_03347	0.76	+1.2
3,504,325	-		EFB2_03347	0.76	+1.6
3,504,325	-		EFB2_03347	0.76	-0.3
3,504,325	-		EFB2_03347	0.76	+2.6
3,504,325	-		EFB2_03347	0.76	+1.5
3,504,325	-		EFB2_03347	0.76	+2.3
3,504,325	-		EFB2_03347	0.76	-1.0
3,504,325	-		EFB2_03347	0.76	-2.9
3,504,325	-		EFB2_03347	0.76	+1.3
3,504,325	-		EFB2_03347	0.76	+1.3
3,504,325	-		EFB2_03347	0.76	+0.2
3,504,401	+		EFB2_03347	0.84	-0.7
3,504,401	+		EFB2_03347	0.84	-0.4
3,504,402	-		EFB2_03347	0.84	+0.4
3,504,402	-		EFB2_03347	0.84	-1.7
3,504,405	+		EFB2_03347	0.84	+1.1
3,504,444	+		EFB2_03347	0.88	+0.7
3,504,444	+		EFB2_03347	0.88	+0.6
3,504,445	-		EFB2_03347	0.88	+0.8
3,504,445	-		EFB2_03347	0.88	+1.3
3,504,587	+				+0.5
3,504,587	+				+1.7
3,504,587	+				+1.3
3,504,588	-				-2.2
3,504,588	-				+0.5
3,504,588	-				-0.5
3,504,615	+				-0.6
3,504,616	-				+0.7
3,504,709	+		EFB2_03348	0.13	+1.5
3,504,709	+		EFB2_03348	0.13	+0.5
3,504,746	+		EFB2_03348	0.16	+1.5
3,504,746	+		EFB2_03348	0.16	-0.2
3,504,747	-		EFB2_03348	0.16	-1.8
3,504,747	-		EFB2_03348	0.16	+1.9
3,504,793	-		EFB2_03348	0.21	-0.5
3,504,923	+		EFB2_03348	0.33	+1.9
3,504,923	+		EFB2_03348	0.33	-2.9
3,504,924	-		EFB2_03348	0.33	+0.3
3,505,059	-		EFB2_03348	0.46	-2.9
3,505,091	+		EFB2_03348	0.49	-1.8
3,505,091	+		EFB2_03348	0.49	+0.1
3,505,091	+		EFB2_03348	0.49	+2.3
3,505,091	+		EFB2_03348	0.49	-2.0
3,505,091	+		EFB2_03348	0.49	+0.4
3,505,092	-		EFB2_03348	0.49	-0.4
3,505,092	-		EFB2_03348	0.49	-0.0
3,505,092	-		EFB2_03348	0.49	+1.1
3,505,092	-		EFB2_03348	0.49	-1.3
3,505,092	-		EFB2_03348	0.49	+1.2
3,505,103	+		EFB2_03348	0.50	+2.1
3,505,103	+		EFB2_03348	0.50	+4.6
3,505,140	+		EFB2_03348	0.54	-1.7
3,505,140	+		EFB2_03348	0.54	+1.0
3,505,141	-		EFB2_03348	0.54	-1.5
3,505,176	+		EFB2_03348	0.57	+1.3
3,505,176	+		EFB2_03348	0.57	-2.8
3,505,176	+		EFB2_03348	0.57	+0.1
3,505,176	+		EFB2_03348	0.57	-0.7
3,505,176	+		EFB2_03348	0.57	+0.6
3,505,176	+		EFB2_03348	0.57	+1.1
3,505,177	-		EFB2_03348	0.57	+1.6
3,505,177	-		EFB2_03348	0.57	+0.1
3,505,177	-		EFB2_03348	0.57	+1.6
3,505,177	-		EFB2_03348	0.57	-1.5
3,505,177	-		EFB2_03348	0.57	-0.3
3,505,177	-		EFB2_03348	0.57	+0.7
3,505,177	-		EFB2_03348	0.57	+1.8
3,505,177	-		EFB2_03348	0.57	+0.2
3,505,177	-		EFB2_03348	0.57	-2.6
3,505,177	-		EFB2_03348	0.57	+0.7
3,505,177	-		EFB2_03348	0.57	+1.3
3,505,177	-		EFB2_03348	0.57	-1.2
3,505,177	-		EFB2_03348	0.57	+1.9
3,505,177	-		EFB2_03348	0.57	+1.1
3,505,177	-		EFB2_03348	0.57	+0.5
3,505,177	-		EFB2_03348	0.57	-1.0
3,505,209	-		EFB2_03348	0.60	+0.7
3,505,243	+		EFB2_03348	0.64	-2.0
3,505,243	+		EFB2_03348	0.64	-0.9
3,505,243	+		EFB2_03348	0.64	-1.4
3,505,243	+		EFB2_03348	0.64	-1.0
3,505,243	+		EFB2_03348	0.64	+1.7
3,505,243	+		EFB2_03348	0.64	-2.2
3,505,243	+		EFB2_03348	0.64	-1.3
3,505,243	+		EFB2_03348	0.64	-0.3
3,505,243	+		EFB2_03348	0.64	+2.6
3,505,243	+		EFB2_03348	0.64	+1.0
3,505,244	-		EFB2_03348	0.64	-3.0
3,505,244	-		EFB2_03348	0.64	-3.0
3,505,244	-		EFB2_03348	0.64	+2.3
3,505,244	-		EFB2_03348	0.64	-1.7
3,505,244	-		EFB2_03348	0.64	-0.7
3,505,244	-		EFB2_03348	0.64	-2.9
3,505,248	+		EFB2_03348	0.64	-1.4
3,505,248	+		EFB2_03348	0.64	-1.4
3,505,371	+		EFB2_03348	0.76	+0.4
3,505,371	+		EFB2_03348	0.76	-1.6
3,505,371	+		EFB2_03348	0.76	+2.0
3,505,401	+		EFB2_03348	0.79	+0.6
3,505,402	-		EFB2_03348	0.79	-3.1
3,505,406	+		EFB2_03348	0.79	-1.2
3,505,406	+		EFB2_03348	0.79	-1.9
3,505,406	+		EFB2_03348	0.79	-0.4
3,505,407	-		EFB2_03348	0.79	-0.3
3,505,407	-		EFB2_03348	0.79	+3.3
3,505,407	-		EFB2_03348	0.79	-2.4
3,505,407	-		EFB2_03348	0.79	-1.0
3,505,407	-		EFB2_03348	0.79	-2.0
3,505,407	-		EFB2_03348	0.79	+1.1
3,505,407	-		EFB2_03348	0.79	+0.2
3,505,407	-		EFB2_03348	0.79	-2.7
3,505,430	+		EFB2_03348	0.82	-0.1
3,505,430	+		EFB2_03348	0.82	-0.5
3,505,430	+		EFB2_03348	0.82	+0.7
3,505,430	+		EFB2_03348	0.82	+1.3
3,505,430	+		EFB2_03348	0.82	-0.7
3,505,431	-		EFB2_03348	0.82	-1.0
3,505,501	+		EFB2_03348	0.88	+0.3
3,505,501	+		EFB2_03348	0.88	-1.3
3,505,501	+		EFB2_03348	0.88	+0.8
3,505,501	+		EFB2_03348	0.88	-2.2
3,505,505	+		EFB2_03348	0.89	+0.7
3,505,505	+		EFB2_03348	0.89	-0.0
3,505,505	+		EFB2_03348	0.89	-2.5
3,505,505	+		EFB2_03348	0.89	+0.5
3,505,506	-		EFB2_03348	0.89	+1.2
3,505,511	+		EFB2_03348	0.89	-1.5
3,505,511	+		EFB2_03348	0.89	-0.5
3,505,511	+		EFB2_03348	0.89	-0.6
3,505,512	-		EFB2_03348	0.89	+0.5
3,505,620	+				+0.5
3,505,620	+				-2.2
3,505,620	+				-1.4
3,505,620	+				+0.3
3,505,620	+				+0.4
3,505,620	+				-0.3
3,505,620	+				+0.6
3,505,620	+				-0.1
3,505,621	-				-2.4
3,505,621	-				+1.8
3,505,737	+				+0.7
3,505,737	+				+0.7
3,505,738	-				-0.3
3,505,738	-				+2.3
3,505,738	-				-1.5
3,505,738	-				-0.7
3,505,738	-				-1.1
3,505,738	-				+0.1
3,505,812	-		EFB2_03349	0.16	+0.8
3,505,836	+		EFB2_03349	0.18	-0.2
3,505,837	-		EFB2_03349	0.18	-1.9
3,505,893	+		EFB2_03349	0.23	+0.1
3,505,893	+		EFB2_03349	0.23	-1.3
3,505,893	+		EFB2_03349	0.23	-0.7
3,505,893	+		EFB2_03349	0.23	+1.3
3,505,893	+		EFB2_03349	0.23	-1.2
3,505,893	+		EFB2_03349	0.23	-1.3
3,505,893	+		EFB2_03349	0.23	-3.4
3,505,893	+		EFB2_03349	0.23	-2.8
3,505,894	-		EFB2_03349	0.23	-1.0
3,505,894	-		EFB2_03349	0.23	+1.2
3,505,904	+		EFB2_03349	0.24	-3.0
3,505,904	+		EFB2_03349	0.24	-0.5
3,505,904	+		EFB2_03349	0.24	-0.4
3,505,904	+		EFB2_03349	0.24	-1.8
3,505,904	+		EFB2_03349	0.24	+0.4
3,505,905	-		EFB2_03349	0.24	-2.9
3,505,905	-		EFB2_03349	0.24	+0.2
3,505,908	+		EFB2_03349	0.25	+0.4
3,505,908	+		EFB2_03349	0.25	+0.6
3,505,908	+		EFB2_03349	0.25	-0.0
3,505,908	+		EFB2_03349	0.25	-1.3
3,505,908	+		EFB2_03349	0.25	+3.4
3,505,908	+		EFB2_03349	0.25	+1.0
3,505,908	+		EFB2_03349	0.25	+2.5
3,505,908	+		EFB2_03349	0.25	-1.2
3,505,908	+		EFB2_03349	0.25	-1.2
3,505,908	+		EFB2_03349	0.25	+0.3
3,505,908	+		EFB2_03349	0.25	+1.0
3,505,908	+		EFB2_03349	0.25	-1.4
3,505,908	+		EFB2_03349	0.25	-1.0
3,505,908	+		EFB2_03349	0.25	-0.6
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