Strain Fitness in Escherichia fergusonii Becca around EFB2_03344

Experiment: phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2)
3,499,704	+				+1.0
3,499,705	-				+0.1
3,499,707	+				-0.4
3,499,707	+				+0.7
3,499,708	-				+2.0
3,499,708	-				+0.2
3,499,708	-				+2.3
3,499,708	-				+1.3
3,499,708	-				-1.5
3,499,737	+				-0.4
3,499,737	+				-1.6
3,499,738	-				-1.5
3,499,738	-				+0.9
3,499,738	-				-1.9
3,499,743	+				-1.8
3,499,743	+				-0.3
3,499,743	+				-0.5
3,499,743	+				+0.9
3,499,743	+				-2.2
3,499,743	+				-1.8
3,499,743	+				+0.4
3,499,743	+				-2.2
3,499,743	+				+0.2
3,499,743	+				-2.0
3,499,743	+				+1.8
3,499,743	+				+0.5
3,499,743	+				+1.3
3,499,743	+				+0.3
3,499,743	+				+0.4
3,499,743	+				+0.9
3,499,744	-				-0.2
3,499,744	-				+0.5
3,499,744	-				+0.4
3,499,744	-				+0.2
3,499,744	-				-0.3
3,499,744	-				+0.5
3,499,744	-				-0.4
3,499,744	-				+1.5
3,499,744	-				-0.2
3,499,744	-				-1.3
3,499,744	-				+1.0
3,499,744	-				+2.0
3,499,744	-				-0.2
3,499,744	-				+1.3
3,499,753	+				+0.2
3,499,753	+				+1.7
3,499,753	+				+2.8
3,499,754	-				-0.8
3,499,754	-				+0.7
3,499,800	+				+0.8
3,499,800	+				-0.0
3,499,800	+				-2.5
3,499,800	+				+1.5
3,499,801	-				-1.3
3,499,801	-				-0.9
3,499,831	+		EFB2_03343	0.11	+1.3
3,499,831	+		EFB2_03343	0.11	+0.7
3,499,831	+		EFB2_03343	0.11	-1.3
3,499,831	+		EFB2_03343	0.11	-2.8
3,499,831	+		EFB2_03343	0.11	-2.1
3,499,831	+		EFB2_03343	0.11	-1.1
3,499,831	+		EFB2_03343	0.11	+0.4
3,499,832	-		EFB2_03343	0.12	+1.0
3,499,832	-		EFB2_03343	0.12	+1.5
3,499,832	-		EFB2_03343	0.12	+1.0
3,499,832	-		EFB2_03343	0.12	-0.3
3,499,832	-		EFB2_03343	0.12	+1.3
3,499,832	-		EFB2_03343	0.12	+1.0
3,499,832	-		EFB2_03343	0.12	+0.6
3,499,858	-		EFB2_03343	0.15	+0.1
3,499,870	+		EFB2_03343	0.17	-0.4
3,499,870	+		EFB2_03343	0.17	+0.0
3,499,871	-		EFB2_03343	0.17	+1.3
3,499,871	-		EFB2_03343	0.17	+1.6
3,499,871	-		EFB2_03343	0.17	+1.1
3,499,905	-		EFB2_03343	0.21	+0.3
3,500,023	+		EFB2_03343	0.36	+0.5
3,500,023	+		EFB2_03343	0.36	+1.8
3,500,024	-		EFB2_03343	0.36	-0.7
3,500,061	+		EFB2_03343	0.41	-1.7
3,500,061	+		EFB2_03343	0.41	-1.7
3,500,061	+		EFB2_03343	0.41	+0.1
3,500,061	+		EFB2_03343	0.41	-2.2
3,500,061	+		EFB2_03343	0.41	-0.4
3,500,062	-		EFB2_03343	0.41	-2.8
3,500,062	-		EFB2_03343	0.41	+0.4
3,500,062	-		EFB2_03343	0.41	-2.0
3,500,062	-		EFB2_03343	0.41	-2.8
3,500,062	-		EFB2_03343	0.41	-1.7
3,500,062	-		EFB2_03343	0.41	+0.2
3,500,180	+		EFB2_03343	0.57	-0.4
3,500,180	+		EFB2_03343	0.57	-1.2
3,500,181	-		EFB2_03343	0.57	+0.6
3,500,181	-		EFB2_03343	0.57	+2.8
3,500,181	-		EFB2_03343	0.57	-2.6
3,500,181	-		EFB2_03343	0.57	-0.0
3,500,181	-		EFB2_03343	0.57	-1.1
3,500,181	-		EFB2_03343	0.57	-1.7
3,500,194	+		EFB2_03343	0.58	-1.2
3,500,195	-		EFB2_03343	0.59	-1.7
3,500,195	-		EFB2_03343	0.59	-0.4
3,500,195	-		EFB2_03343	0.59	+0.4
3,500,279	-		EFB2_03343	0.69	-0.7
3,500,279	-		EFB2_03343	0.69	+1.0
3,500,323	+		EFB2_03343	0.75	+0.7
3,500,323	+		EFB2_03343	0.75	-2.2
3,500,323	+		EFB2_03343	0.75	-1.2
3,500,323	+		EFB2_03343	0.75	-0.0
3,500,323	+		EFB2_03343	0.75	+1.3
3,500,323	+		EFB2_03343	0.75	+2.8
3,500,323	+		EFB2_03343	0.75	+2.7
3,500,324	-		EFB2_03343	0.75	+0.2
3,500,324	-		EFB2_03343	0.75	+0.7
3,500,324	-		EFB2_03343	0.75	-1.7
3,500,324	-		EFB2_03343	0.75	-1.0
3,500,324	-		EFB2_03343	0.75	-0.9
3,500,324	-		EFB2_03343	0.75	-0.8
3,500,324	-		EFB2_03343	0.75	-0.9
3,500,348	+		EFB2_03343	0.78	-2.0
3,500,348	+		EFB2_03343	0.78	-1.9
3,500,348	+		EFB2_03343	0.78	+0.1
3,500,348	+		EFB2_03343	0.78	-2.7
3,500,348	+		EFB2_03343	0.78	+1.8
3,500,348	+		EFB2_03343	0.78	+0.6
3,500,348	+		EFB2_03343	0.78	+1.5
3,500,349	-		EFB2_03343	0.78	+0.7
3,500,349	-		EFB2_03343	0.78	+1.4
3,500,349	-		EFB2_03343	0.78	-0.5
3,500,349	-		EFB2_03343	0.78	+0.5
3,500,349	-		EFB2_03343	0.78	+0.7
3,500,349	-		EFB2_03343	0.78	-1.6
3,500,349	-		EFB2_03343	0.78	+0.7
3,500,349	-		EFB2_03343	0.78	+0.1
3,500,349	-		EFB2_03343	0.78	+1.3
3,500,349	-		EFB2_03343	0.78	+1.4
3,500,349	-		EFB2_03343	0.78	+2.5
3,500,371	+		EFB2_03343	0.81	-0.4
3,500,372	-		EFB2_03343	0.81	+1.0
3,500,372	-		EFB2_03343	0.81	+1.7
3,500,373	+		EFB2_03343	0.82	-0.5
3,500,373	+		EFB2_03343	0.82	-0.3
3,500,374	-		EFB2_03343	0.82	+1.1
3,500,380	+		EFB2_03343	0.82	-0.7
3,500,381	-		EFB2_03343	0.83	-2.9
3,500,381	-		EFB2_03343	0.83	-0.3
3,500,401	+		EFB2_03343	0.85	+1.8
3,500,402	-		EFB2_03343	0.85	-1.0
3,500,402	-		EFB2_03343	0.85	-2.5
3,500,506	+				-0.7
3,500,506	+				+0.7
3,500,506	+				-0.0
3,500,506	+				-0.2
3,500,506	+				+1.4
3,500,506	+				+0.4
3,500,506	+				-1.7
3,500,506	+				-0.0
3,500,507	-				+0.4
3,500,507	-				+1.2
3,500,507	-				-2.7
3,500,507	-				-3.2
3,500,507	-				+0.7
3,500,507	-				+1.3
3,500,507	-				-0.8
3,500,527	+				+0.3
3,500,533	-				-0.9
3,500,538	+				-0.5
3,500,539	-				+1.0
3,500,539	-				+1.3
3,500,539	-				-2.2
3,500,539	-				-0.3
3,500,539	-				-3.2
3,500,552	+				-1.4
3,500,553	-				+0.7
3,500,553	-				+0.1
3,500,553	-				+1.3
3,500,553	-				-0.2
3,500,584	+				+1.8
3,500,584	+				-1.5
3,500,584	+				-2.3
3,500,585	-				-2.1
3,500,585	-				-1.9
3,500,585	-				-0.4
3,500,585	-				+1.3
3,500,604	+				-3.9
3,500,604	+				+2.5
3,500,605	-				+1.1
3,500,605	-				+0.3
3,500,605	-				-0.2
3,500,605	-				-2.5
3,500,605	-				+1.6
3,500,605	-				+0.9
3,500,664	-				-0.2
3,500,711	+		EFB2_03344	0.19	-0.9
3,500,712	-		EFB2_03344	0.20	+2.5
3,500,752	+		EFB2_03344	0.47	+0.7
3,500,752	+		EFB2_03344	0.47	+2.4
3,500,752	+		EFB2_03344	0.47	+0.0
3,500,753	-		EFB2_03344	0.47	+0.3
3,500,788	-		EFB2_03344	0.71	+0.4
3,500,788	-		EFB2_03344	0.71	-0.0
3,500,788	-		EFB2_03344	0.71	-0.6
3,500,788	-		EFB2_03344	0.71	+0.8
3,500,797	-		EFB2_03344	0.77	+0.5
3,500,805	+		EFB2_03344	0.82	+1.7
3,500,806	-		EFB2_03344	0.83	-1.4
3,500,806	-		EFB2_03344	0.83	+0.6
3,500,806	-		EFB2_03344	0.83	+0.1
3,500,817	+				+2.3
3,500,820	+				-1.0
3,500,820	+				+0.5
3,500,820	+				-3.0
3,500,821	-				+1.8
3,500,821	-				+0.4
3,500,821	-				+1.0
3,500,826	+				+1.9
3,500,826	+				+2.0
3,500,826	+				-0.9
3,500,826	+				+1.8
3,500,826	+				-0.6
3,500,826	+				+1.2
3,500,827	-				-2.2
3,500,827	-				-2.9
3,500,827	-				-0.0
3,500,827	-				+0.3
3,500,827	-				-0.0
3,500,827	-				-2.2
3,500,845	+				-2.0
3,500,845	+				-0.5
3,500,845	+				-1.0
3,500,845	+				-2.7
3,500,845	+				+0.0
3,500,845	+				+0.0
3,500,845	+				+1.0
3,500,846	-				-0.1
3,500,846	-				-0.8
3,500,846	-				-0.7
3,500,846	-				-1.5
3,500,847	+				-0.1
3,500,847	+				+2.3
3,500,847	+				+1.2
3,500,847	+				+0.0
3,500,847	+				-1.0
3,500,847	+				-1.6
3,500,847	+				-1.5
3,500,847	+				+1.1
3,500,847	+				-0.3
3,500,847	+				+0.0
3,500,847	+				+2.3
3,500,847	+				-1.2
3,500,847	+				-2.7
3,500,847	+				+0.7
3,500,847	+				+0.1
3,500,847	+				-2.0
3,500,847	+				-1.3
3,500,847	+				+0.2
3,500,847	+				-1.2
3,500,847	+				+1.2
3,500,847	+				-0.3
3,500,848	-				+1.5
3,500,848	-				+1.9
3,500,848	-				+1.6
3,500,848	-				+1.8
3,500,848	-				+0.8
3,500,848	-				+1.9
3,500,848	-				-0.3
3,500,848	-				-1.7
3,500,848	-				+0.8
3,500,848	-				+0.6
3,500,848	-				-1.3
3,500,848	-				-1.4
3,500,848	-				+1.0
3,500,848	-				-0.3
3,500,848	-				+1.0
3,500,848	-				-0.4
3,500,848	-				-1.1
3,500,848	-				-0.1
3,500,848	-				+0.8
3,500,848	-				+1.3
3,500,848	-				-1.4
3,500,848	-				-0.7
3,500,848	-				-0.1
3,500,848	-				-0.6
3,500,848	-				+0.1
3,500,848	-				+0.2
3,500,859	+				+1.6
3,500,859	+				-2.6
3,500,859	+				-1.7
3,500,860	-				+0.5
3,500,860	-				+0.6
3,500,860	-				-0.1
3,500,860	-				-0.6
3,500,860	-				+1.2
3,500,860	-				-2.4
3,500,864	+				-1.2
3,500,871	+				-1.6
3,500,936	+				+0.7
3,500,937	-				-0.4
3,500,953	+				-2.1
3,500,953	+				+1.1
3,500,953	+				+0.5
3,500,953	+				-1.4
3,500,953	+				-1.0
3,500,954	-				-0.3
3,500,959	+				+0.7
3,500,959	+				+0.3
3,500,959	+				-1.2
3,500,959	+				-0.5
3,500,959	+				+0.9
3,500,960	-				+0.6
3,500,986	+				-1.8
3,500,986	+				-0.9
3,500,986	+				+1.5
3,500,987	-				-0.1
3,500,987	-				+0.6
3,501,033	+				+0.6
3,501,092	+		EFB2_03345	0.17	-0.2
3,501,092	+		EFB2_03345	0.17	+1.0
3,501,092	+		EFB2_03345	0.17	+4.4
3,501,092	+		EFB2_03345	0.17	+0.8
3,501,092	+		EFB2_03345	0.17	-1.9
3,501,092	+		EFB2_03345	0.17	+1.1
3,501,092	+		EFB2_03345	0.17	+1.4
3,501,093	-		EFB2_03345	0.17	+0.7
3,501,093	-		EFB2_03345	0.17	+0.9
3,501,093	-		EFB2_03345	0.17	-2.0
3,501,093	-		EFB2_03345	0.17	-0.7
3,501,093	-		EFB2_03345	0.17	+0.7
3,501,093	-		EFB2_03345	0.17	-0.8
3,501,094	+		EFB2_03345	0.17	-0.2
3,501,094	+		EFB2_03345	0.17	+0.5
3,501,094	+		EFB2_03345	0.17	+0.8
3,501,094	+		EFB2_03345	0.17	+0.7
3,501,095	-		EFB2_03345	0.17	+1.6
3,501,095	-		EFB2_03345	0.17	-0.0
3,501,095	-		EFB2_03345	0.17	+1.7
3,501,132	+		EFB2_03345	0.22	-1.2
3,501,132	+		EFB2_03345	0.22	+2.9
3,501,132	+		EFB2_03345	0.22	-2.2
3,501,132	+		EFB2_03345	0.22	-1.9
3,501,133	-		EFB2_03345	0.22	-0.9
3,501,133	-		EFB2_03345	0.22	-0.7
3,501,133	-		EFB2_03345	0.22	-0.3
3,501,133	-		EFB2_03345	0.22	-0.2
3,501,142	+		EFB2_03345	0.23	+0.1
3,501,142	+		EFB2_03345	0.23	+0.0
3,501,142	+		EFB2_03345	0.23	+0.3
3,501,142	+		EFB2_03345	0.23	-1.1
3,501,142	+		EFB2_03345	0.23	-2.7
3,501,142	+		EFB2_03345	0.23	+0.9
3,501,142	+		EFB2_03345	0.23	-3.5
3,501,142	+		EFB2_03345	0.23	-2.9
3,501,142	+		EFB2_03345	0.23	+0.4
3,501,142	+		EFB2_03345	0.23	-0.2
3,501,143	-		EFB2_03345	0.23	-2.4
3,501,143	-		EFB2_03345	0.23	+1.3
3,501,143	-		EFB2_03345	0.23	+0.5
3,501,189	+		EFB2_03345	0.29	+0.5
3,501,189	+		EFB2_03345	0.29	+2.7
3,501,190	-		EFB2_03345	0.29	+0.0
3,501,190	-		EFB2_03345	0.29	+0.6
3,501,224	+		EFB2_03345	0.33	-1.2
3,501,224	+		EFB2_03345	0.33	-3.1
3,501,224	+		EFB2_03345	0.33	-1.8
3,501,225	-		EFB2_03345	0.34	+0.1
3,501,225	-		EFB2_03345	0.34	-2.5
3,501,225	-		EFB2_03345	0.34	-2.4
3,501,231	+		EFB2_03345	0.34	+0.3
3,501,231	+		EFB2_03345	0.34	-2.1
3,501,231	+		EFB2_03345	0.34	-0.2
3,501,231	+		EFB2_03345	0.34	+0.3
3,501,231	+		EFB2_03345	0.34	-2.1
3,501,232	-		EFB2_03345	0.34	-1.5
3,501,232	-		EFB2_03345	0.34	-1.9
3,501,232	-		EFB2_03345	0.34	-0.9
3,501,267	+		EFB2_03345	0.39	-0.1
3,501,267	+		EFB2_03345	0.39	-0.5
3,501,267	+		EFB2_03345	0.39	+0.1
3,501,267	+		EFB2_03345	0.39	-1.2
3,501,267	+		EFB2_03345	0.39	+0.3
3,501,268	-		EFB2_03345	0.39	+0.6
3,501,268	-		EFB2_03345	0.39	-0.5
3,501,268	-		EFB2_03345	0.39	-0.5
3,501,268	-		EFB2_03345	0.39	-2.2
3,501,268	-		EFB2_03345	0.39	-0.2
3,501,268	-		EFB2_03345	0.39	-0.2
3,501,268	-		EFB2_03345	0.39	-1.8
3,501,408	+		EFB2_03345	0.57	+0.7
3,501,408	+		EFB2_03345	0.57	-1.7
3,501,409	-		EFB2_03345	0.57	+1.3
3,501,445	+		EFB2_03345	0.61	-2.3
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