Strain Fitness in Escherichia fergusonii Becca around EFB2_02690

Experiment: phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2)
2,846,633	-				-0.5
2,846,633	-				+2.5
2,846,633	-				+1.0
2,846,634	+				-1.7
2,846,634	+				+3.3
2,846,635	-				+1.8
2,846,635	-				+2.3
2,846,635	-				+0.6
2,846,635	-				-1.3
2,846,635	-				+2.5
2,846,642	+				+1.2
2,846,642	+				-0.5
2,846,661	-				-0.3
2,846,689	+				+0.9
2,846,689	+				-0.3
2,846,689	+				-0.5
2,846,689	+				-1.4
2,846,689	+				+0.7
2,846,689	+				-0.1
2,846,689	+				+0.7
2,846,689	+				+2.5
2,846,689	+				-1.3
2,846,689	+				+0.2
2,846,690	-				+0.2
2,846,690	-				-0.5
2,846,690	-				+0.3
2,846,690	-				-0.3
2,846,690	-				+1.1
2,846,690	-				+0.3
2,846,690	-				-2.3
2,846,690	-				+0.5
2,846,690	-				-0.2
2,846,690	-				+0.5
2,846,690	-				+0.9
2,846,690	-				-0.6
2,846,690	-				-1.3
2,846,690	-				+0.9
2,846,693	-				-1.5
2,846,693	-				-1.7
2,846,693	-				-0.9
2,846,693	-				+3.2
2,846,717	+				-0.6
2,846,718	-				-1.6
2,846,725	+				-1.2
2,846,725	+				+1.9
2,846,725	+				-0.8
2,846,725	+				-1.5
2,846,725	+				+0.2
2,846,725	+				+1.7
2,846,725	+				-0.2
2,846,726	-				+0.3
2,846,726	-				-2.3
2,846,728	+				-0.6
2,846,728	+				-2.3
2,846,729	-				-2.0
2,846,729	-				+1.3
2,846,729	-				+1.4
2,846,756	+				-2.2
2,846,757	-				+1.8
2,846,801	-				-0.9
2,846,801	-				-2.6
2,846,801	-				-1.9
2,846,804	-				-3.0
2,846,829	+				-1.2
2,846,835	+				+0.2
2,846,836	-				-2.6
2,846,836	-				-0.9
2,846,836	-				-2.7
2,846,905	+				-0.2
2,846,911	+				+0.5
2,846,911	+				-0.6
2,846,912	-				+0.3
2,846,912	-				-1.5
2,846,912	-				+0.3
2,846,912	-				-3.1
2,846,912	-				-0.8
2,846,914	-				-2.0
2,847,366	+		EFB2_02689	0.70	-1.5
2,847,366	+		EFB2_02689	0.70	-1.0
2,847,370	+		EFB2_02689	0.71	-1.9
2,847,370	+		EFB2_02689	0.71	+2.5
2,847,370	+		EFB2_02689	0.71	-1.3
2,847,370	+		EFB2_02689	0.71	-1.9
2,847,370	+		EFB2_02689	0.71	-1.0
2,847,370	+		EFB2_02689	0.71	+0.2
2,847,370	+		EFB2_02689	0.71	-1.7
2,847,370	+		EFB2_02689	0.71	-0.6
2,847,417	+		EFB2_02689	0.82	-0.1
2,847,456	+				+1.0
2,847,456	+				+1.0
2,847,559	+				+1.1
2,847,559	+				+2.5
2,847,560	-				-0.9
2,847,560	-				-3.7
2,847,560	-				+2.5
2,847,560	-				+2.5
2,847,560	-				+0.1
2,847,560	-				+0.2
2,847,560	-				+0.1
2,847,561	+				+0.2
2,847,562	-				-2.5
2,847,562	-				+2.1
2,847,562	-				-1.5
2,847,562	-				+1.9
2,847,562	-				+1.5
2,847,562	-				-0.9
2,847,565	-				+0.5
2,847,570	+				+1.5
2,847,570	+				-0.5
2,847,571	-				-0.3
2,847,571	-				+1.5
2,847,571	-				+0.4
2,847,571	-				+0.5
2,847,571	-				+0.9
2,847,571	-				+0.6
2,847,571	-				+2.0
2,847,571	-				-1.5
2,847,571	-				+0.5
2,847,576	-				+0.3
2,847,634	+				+1.3
2,847,635	-				-2.9
2,847,635	-				+2.5
2,847,635	-				-0.9
2,847,635	-				+0.3
2,847,642	-				+1.0
2,847,886	-		EFB2_02690	0.28	-0.6
2,848,582	-				-0.3
2,848,582	-				+1.4
2,848,582	-				-3.0
2,848,582	-				+0.7
2,848,582	-				-1.9
2,848,582	-				-0.0
2,848,582	-				-0.9
2,848,603	-				+2.4
2,848,603	-				+0.4
2,848,603	-				-1.6
2,848,603	-				+3.6
2,848,603	-				+1.2
2,848,603	-				+0.0
2,848,604	+				-1.0
2,848,605	-				-0.2
2,848,605	-				+0.3
2,848,605	-				-3.3
2,848,625	-				+0.9
2,848,625	-				+1.6
2,848,625	-				-1.4
2,848,648	-				-0.2
2,848,653	-				+0.2
2,848,653	-				+1.9
2,848,653	-				+0.2
2,848,657	-				-1.0
2,848,657	-				-1.2
2,848,657	-				+1.0
2,848,665	+				-0.0
2,848,665	+				+1.9
2,848,665	+				+2.1
2,848,666	-				-0.0
2,848,666	-				+1.4
2,848,666	-				-0.9
2,848,666	-				-1.6
2,848,666	-				+1.2
2,848,666	-				+0.5
2,848,666	-				+1.1
2,848,666	-				+2.0
2,848,666	-				-3.1
2,848,666	-				-3.0
2,848,666	-				-2.2
2,848,669	+				+3.9
2,848,669	+				+1.0
2,848,669	+				+0.5
2,848,669	+				+2.8
2,848,670	-				-0.7
2,848,670	-				-0.3
2,848,670	-				+2.1
2,848,686	+				-1.5
2,848,687	-				-0.3
2,848,687	-				+3.2
2,848,689	+				-2.4
2,848,690	-				+0.8
2,848,690	-				+0.5
2,848,690	-				+0.5
2,848,712	+				+2.5
2,848,713	-				-2.7
2,848,724	-				-0.6
2,848,788	+				-0.6
2,848,789	-				-0.8
2,848,789	-				+3.1
2,848,835	-				+2.2
2,848,835	-				+1.4
2,848,842	-				-0.6
2,848,845	+		EFB2_02691	0.10	+1.5
2,848,846	-		EFB2_02691	0.10	+0.8
2,848,869	-		EFB2_02691	0.12	+0.3
2,848,900	-		EFB2_02691	0.15	-1.0
2,848,954	+		EFB2_02691	0.21	-0.9
2,848,955	-		EFB2_02691	0.21	+1.5
2,848,958	-		EFB2_02691	0.21	-0.8
2,848,958	-		EFB2_02691	0.21	+1.0
2,848,965	+		EFB2_02691	0.22	+1.0
2,848,966	-		EFB2_02691	0.22	+3.3
2,848,966	-		EFB2_02691	0.22	+1.8
2,848,966	-		EFB2_02691	0.22	+0.5
2,848,966	-		EFB2_02691	0.22	+1.7
2,848,966	-		EFB2_02691	0.22	+0.5
2,848,966	-		EFB2_02691	0.22	-0.6
2,848,966	-		EFB2_02691	0.22	-1.9
2,848,966	-		EFB2_02691	0.22	-1.6
2,848,966	-		EFB2_02691	0.22	+0.2
2,848,966	-		EFB2_02691	0.22	-0.6
2,848,966	-		EFB2_02691	0.22	+0.5
2,849,004	+		EFB2_02691	0.26	-0.3
2,849,005	-		EFB2_02691	0.26	+1.5
2,849,005	-		EFB2_02691	0.26	+1.7
2,849,013	+		EFB2_02691	0.27	+0.5
2,849,077	-		EFB2_02691	0.33	+2.0
2,849,077	-		EFB2_02691	0.33	-0.3
2,849,079	+		EFB2_02691	0.33	-1.2
2,849,101	-		EFB2_02691	0.35	-1.3
2,849,101	-		EFB2_02691	0.35	+0.5
2,849,119	-		EFB2_02691	0.37	+0.5
2,849,127	-		EFB2_02691	0.38	+2.5
2,849,127	-		EFB2_02691	0.38	+1.0
2,849,127	-		EFB2_02691	0.38	+2.5
2,849,223	+		EFB2_02691	0.47	+0.2
2,849,223	+		EFB2_02691	0.47	+0.5
2,849,223	+		EFB2_02691	0.47	-0.9
2,849,223	+		EFB2_02691	0.47	+0.7
2,849,224	-		EFB2_02691	0.47	+2.5
2,849,224	-		EFB2_02691	0.47	+3.4
2,849,224	-		EFB2_02691	0.47	-1.0
2,849,224	-		EFB2_02691	0.47	-0.5
2,849,234	-		EFB2_02691	0.48	-0.3
2,849,234	-		EFB2_02691	0.48	-0.6
2,849,238	-		EFB2_02691	0.49	-0.4
2,849,278	-		EFB2_02691	0.53	-1.0
2,849,278	-		EFB2_02691	0.53	-1.8
2,849,278	-		EFB2_02691	0.53	+2.1
2,849,289	+		EFB2_02691	0.54	+2.0
2,849,290	-		EFB2_02691	0.54	-1.5
2,849,290	-		EFB2_02691	0.54	-1.0
2,849,290	-		EFB2_02691	0.54	+2.9
2,849,369	+		EFB2_02691	0.62	+0.5
2,849,369	+		EFB2_02691	0.62	+2.5
2,849,369	+		EFB2_02691	0.62	-0.0
2,849,369	+		EFB2_02691	0.62	+1.0
2,849,370	-		EFB2_02691	0.62	+1.7
2,849,370	-		EFB2_02691	0.62	+4.3
2,849,463	+		EFB2_02691	0.71	-0.6
2,849,477	+		EFB2_02691	0.72	-1.0
2,849,478	-		EFB2_02691	0.72	-0.8
2,849,503	-		EFB2_02691	0.75	-0.9
2,849,503	-		EFB2_02691	0.75	+0.6
2,849,538	+		EFB2_02691	0.78	-1.2
2,849,538	+		EFB2_02691	0.78	-1.9
2,849,538	+		EFB2_02691	0.78	-0.3
2,849,538	+		EFB2_02691	0.78	+5.3
2,849,538	+		EFB2_02691	0.78	+2.0
2,849,539	-		EFB2_02691	0.79	-1.5
2,849,539	-		EFB2_02691	0.79	-0.5
2,849,539	-		EFB2_02691	0.79	-0.9
2,849,539	-		EFB2_02691	0.79	-1.5
2,849,539	-		EFB2_02691	0.79	+1.0
2,849,539	-		EFB2_02691	0.79	+0.7
2,849,539	-		EFB2_02691	0.79	+1.1
2,849,539	-		EFB2_02691	0.79	+1.0
2,849,539	-		EFB2_02691	0.79	-1.0
2,849,539	-		EFB2_02691	0.79	+1.0
2,849,539	-		EFB2_02691	0.79	-1.2
2,849,539	-		EFB2_02691	0.79	+0.8
2,849,539	-		EFB2_02691	0.79	+1.5
2,849,539	-		EFB2_02691	0.79	-0.0
2,849,539	-		EFB2_02691	0.79	-0.9
2,849,539	-		EFB2_02691	0.79	-0.9
2,849,540	+		EFB2_02691	0.79	+0.2
2,849,541	-		EFB2_02691	0.79	-0.9
2,849,541	-		EFB2_02691	0.79	+1.1