Strain Fitness in Escherichia fergusonii Becca around EFB2_02357

Experiment: phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2)
2,490,604	+				-1.7
2,490,604	+				+0.8
2,490,612	+				-0.7
2,490,612	+				+2.2
2,490,612	+				-1.5
2,490,612	+				-1.7
2,490,654	-				-0.7
2,490,704	+				+0.1
2,490,704	+				+0.2
2,490,705	-				-2.2
2,490,705	-				+0.1
2,490,705	-				-1.0
2,490,705	-				-0.5
2,490,791	-		EFB2_02356	0.14	-0.5
2,490,803	+		EFB2_02356	0.16	+3.2
2,490,877	+		EFB2_02356	0.24	+1.2
2,490,878	-		EFB2_02356	0.24	+3.2
2,490,900	+		EFB2_02356	0.27	-0.8
2,490,900	+		EFB2_02356	0.27	-0.2
2,490,901	-		EFB2_02356	0.27	-0.5
2,490,903	+		EFB2_02356	0.27	-0.8
2,490,903	+		EFB2_02356	0.27	-1.7
2,490,903	+		EFB2_02356	0.27	-2.7
2,490,903	+		EFB2_02356	0.27	+0.4
2,490,903	+		EFB2_02356	0.27	+1.1
2,490,903	+		EFB2_02356	0.27	+0.3
2,490,903	+		EFB2_02356	0.27	-0.2
2,490,904	-		EFB2_02356	0.27	+0.1
2,490,940	+		EFB2_02356	0.32	-1.0
2,490,940	+		EFB2_02356	0.32	+2.7
2,490,940	+		EFB2_02356	0.32	+0.1
2,490,940	+		EFB2_02356	0.32	-0.2
2,490,941	-		EFB2_02356	0.32	-0.2
2,491,119	+		EFB2_02356	0.52	-1.5
2,491,119	+		EFB2_02356	0.52	-0.4
2,491,119	+		EFB2_02356	0.52	-0.2
2,491,119	+		EFB2_02356	0.52	-2.2
2,491,119	+		EFB2_02356	0.52	-1.3
2,491,141	+		EFB2_02356	0.55	-0.3
2,491,141	+		EFB2_02356	0.55	-0.5
2,491,142	-		EFB2_02356	0.55	-0.5
2,491,142	-		EFB2_02356	0.55	-0.9
2,491,229	+		EFB2_02356	0.65	+2.4
2,491,257	+		EFB2_02356	0.68	-0.9
2,491,282	+		EFB2_02356	0.71	+0.8
2,491,282	+		EFB2_02356	0.71	+1.3
2,491,282	+		EFB2_02356	0.71	-1.2
2,491,283	-		EFB2_02356	0.71	+2.7
2,491,350	+		EFB2_02356	0.79	-0.9
2,491,350	+		EFB2_02356	0.79	+0.1
2,491,350	+		EFB2_02356	0.79	-1.2
2,491,418	+		EFB2_02356	0.87	-1.0
2,491,418	+		EFB2_02356	0.87	+0.7
2,491,419	-		EFB2_02356	0.87	+0.1
2,491,419	-		EFB2_02356	0.87	-0.5
2,491,454	+				+0.0
2,491,454	+				-1.0
2,491,455	-				+2.4
2,491,455	-				-1.7
2,491,455	-				+2.2
2,491,486	+				-1.2
2,491,486	+				+0.9
2,491,486	+				+1.4
2,491,486	+				-0.5
2,491,486	+				+1.1
2,491,487	-				+0.9
2,491,487	-				-1.9
2,491,505	+				+0.3
2,491,505	+				+0.1
2,491,505	+				-1.5
2,491,505	+				-1.2
2,491,505	+				+0.6
2,491,505	+				+2.5
2,491,505	+				+0.7
2,491,506	-				+0.8
2,491,506	-				+1.4
2,491,570	+				+2.7
2,491,571	-				-3.4
2,491,573	+				+2.7
2,491,573	+				+0.3
2,491,574	-				+3.2
2,491,574	-				+3.3
2,491,578	+				+4.2
2,491,579	-				+0.1
2,491,579	-				+2.5
2,491,605	+				-0.9
2,491,605	+				+0.7
2,491,606	-				-1.2
2,491,606	-				-0.3
2,491,606	-				-0.7
2,491,625	+				-1.3
2,491,625	+				-0.7
2,491,626	-				+4.2
2,491,626	-				+0.1
2,491,626	-				+0.1
2,491,634	+		EFB2_02357	0.10	-2.0
2,491,635	-		EFB2_02357	0.10	+3.1
2,491,635	-		EFB2_02357	0.10	-0.9
2,491,635	-		EFB2_02357	0.10	-0.1
2,491,635	-		EFB2_02357	0.10	-0.9
2,491,635	-		EFB2_02357	0.10	+0.2
2,491,635	-		EFB2_02357	0.10	-0.5
2,491,635	-		EFB2_02357	0.10	+1.7
2,491,635	-		EFB2_02357	0.10	+2.2
2,491,653	+		EFB2_02357	0.13	-1.2
2,491,681	+		EFB2_02357	0.18	-0.4
2,491,709	-		EFB2_02357	0.23	+0.7
2,491,709	-		EFB2_02357	0.23	-0.7
2,491,709	-		EFB2_02357	0.23	+2.1
2,491,724	+		EFB2_02357	0.25	+1.7
2,491,724	+		EFB2_02357	0.25	-1.3
2,491,725	-		EFB2_02357	0.25	+0.1
2,491,774	+		EFB2_02357	0.33	+0.8
2,491,774	+		EFB2_02357	0.33	+0.3
2,491,774	+		EFB2_02357	0.33	+1.7
2,491,774	+		EFB2_02357	0.33	+0.3
2,491,775	-		EFB2_02357	0.33	+0.8
2,491,775	-		EFB2_02357	0.33	+1.5
2,491,775	-		EFB2_02357	0.33	-1.5
2,491,775	-		EFB2_02357	0.33	-1.1
2,491,775	-		EFB2_02357	0.33	+1.0
2,491,775	-		EFB2_02357	0.33	-1.5
2,491,816	+		EFB2_02357	0.40	+0.3
2,491,816	+		EFB2_02357	0.40	+0.1
2,491,816	+		EFB2_02357	0.40	-1.4
2,491,816	+		EFB2_02357	0.40	+1.4
2,491,830	-		EFB2_02357	0.43	+1.4
2,491,830	-		EFB2_02357	0.43	+1.1
2,491,830	-		EFB2_02357	0.43	+0.4
2,491,879	+		EFB2_02357	0.51	+1.9
2,491,879	+		EFB2_02357	0.51	-0.5
2,491,879	+		EFB2_02357	0.51	+2.7
2,491,880	-		EFB2_02357	0.51	-1.8
2,491,880	-		EFB2_02357	0.51	+1.0
2,491,901	+		EFB2_02357	0.54	-0.9
2,491,901	+		EFB2_02357	0.54	+0.7
2,491,902	-		EFB2_02357	0.54	+1.3
2,491,902	-		EFB2_02357	0.54	+1.4
2,491,902	-		EFB2_02357	0.54	+0.8
2,491,904	-		EFB2_02357	0.55	-2.8
2,491,913	+		EFB2_02357	0.56	-0.5
2,491,913	+		EFB2_02357	0.56	-1.7
2,491,920	+		EFB2_02357	0.57	+0.3
2,491,963	+		EFB2_02357	0.65	+1.0
2,491,963	+		EFB2_02357	0.65	-0.4
2,491,963	+		EFB2_02357	0.65	-0.5
2,491,964	-		EFB2_02357	0.65	+0.7
2,491,964	-		EFB2_02357	0.65	+0.1
2,491,964	-		EFB2_02357	0.65	+4.0
2,491,977	+		EFB2_02357	0.67	+0.7
2,491,997	+		EFB2_02357	0.70	+0.7
2,491,998	-		EFB2_02357	0.70	+1.4
2,491,998	-		EFB2_02357	0.70	+1.3
2,491,998	-		EFB2_02357	0.70	+0.5
2,491,998	-		EFB2_02357	0.70	-2.6
2,492,022	+		EFB2_02357	0.74	+1.5
2,492,022	+		EFB2_02357	0.74	+0.6
2,492,022	+		EFB2_02357	0.74	-0.1
2,492,023	-		EFB2_02357	0.74	-0.8
2,492,023	-		EFB2_02357	0.74	+1.4
2,492,051	-		EFB2_02357	0.79	-0.2
2,492,102	+		EFB2_02357	0.87	+1.1
2,492,102	+		EFB2_02357	0.87	+1.2
2,492,164	+				+0.7
2,492,165	-				+0.3
2,492,165	-				+1.0
2,492,181	+				-1.0
2,492,181	+				+0.6
2,492,202	+				-0.2
2,492,207	+				+1.5
2,492,207	+				+1.7
2,492,207	+				-2.4
2,492,207	+				-1.7
2,492,207	+				+1.4
2,492,208	-				+0.0
2,492,208	-				-2.8
2,492,208	-				-0.2
2,492,208	-				+3.4
2,492,208	-				+0.1
2,492,208	-				+1.0
2,492,208	-				+1.0
2,492,208	-				-2.4
2,492,208	-				-1.2
2,492,212	+				+0.4
2,492,212	+				-2.0
2,492,212	+				+1.7
2,492,212	+				-1.3
2,492,264	-				+2.0
2,492,355	-				-2.2
2,492,368	-				-0.9
2,492,368	-				+1.3
2,492,368	-				-1.3
2,492,368	-				+0.7
2,492,368	-				+1.3
2,492,376	-				+0.0
2,492,407	-				-1.5
2,492,417	-				+1.0
2,492,417	-				-0.3
2,492,417	-				+1.5
2,492,417	-				+0.4
2,492,417	-				-0.2
2,492,468	+		EFB2_02358	0.12	-0.7
2,492,468	+		EFB2_02358	0.12	-0.8
2,492,468	+		EFB2_02358	0.12	+1.1
2,492,469	-		EFB2_02358	0.12	-1.1
2,492,469	-		EFB2_02358	0.12	+0.3
2,492,469	-		EFB2_02358	0.12	+1.1
2,492,469	-		EFB2_02358	0.12	-0.1
2,492,469	-		EFB2_02358	0.12	-0.5
2,492,469	-		EFB2_02358	0.12	-0.8
2,492,469	-		EFB2_02358	0.12	+2.1
2,492,469	-		EFB2_02358	0.12	-2.2
2,492,469	-		EFB2_02358	0.12	-0.1
2,492,469	-		EFB2_02358	0.12	+1.3
2,492,469	-		EFB2_02358	0.12	-0.1
2,492,469	-		EFB2_02358	0.12	-0.2
2,492,469	-		EFB2_02358	0.12	-0.8
2,492,479	+		EFB2_02358	0.13	-0.1
2,492,480	-		EFB2_02358	0.13	-0.1
2,492,480	-		EFB2_02358	0.13	-1.1
2,492,480	-		EFB2_02358	0.13	+0.7
2,492,480	-		EFB2_02358	0.13	+0.8
2,492,480	-		EFB2_02358	0.13	-0.2
2,492,523	-		EFB2_02358	0.16	+1.9
2,492,523	-		EFB2_02358	0.16	-2.9
2,492,621	-		EFB2_02358	0.22	-1.0
2,492,621	-		EFB2_02358	0.22	-1.0
2,492,621	-		EFB2_02358	0.22	+0.4
2,492,621	-		EFB2_02358	0.22	-0.1
2,492,621	-		EFB2_02358	0.22	-0.4
2,492,641	-		EFB2_02358	0.24	-1.1
2,492,641	-		EFB2_02358	0.24	+1.1
2,492,641	-		EFB2_02358	0.24	+1.3
2,492,765	+		EFB2_02358	0.32	-0.1
2,492,766	-		EFB2_02358	0.32	-2.5
2,492,767	+		EFB2_02358	0.32	-0.3
2,492,767	+		EFB2_02358	0.32	+3.9
2,492,767	+		EFB2_02358	0.32	+0.3
2,492,768	-		EFB2_02358	0.32	-0.3
2,492,768	-		EFB2_02358	0.32	+1.6
2,492,768	-		EFB2_02358	0.32	+0.3
2,492,768	-		EFB2_02358	0.32	+1.2
2,492,768	-		EFB2_02358	0.32	-1.0
2,492,768	-		EFB2_02358	0.32	-1.2
2,492,768	-		EFB2_02358	0.32	+0.7
2,492,768	-		EFB2_02358	0.32	-2.1
2,492,768	-		EFB2_02358	0.32	+1.0
2,492,768	-		EFB2_02358	0.32	-2.7
2,492,768	-		EFB2_02358	0.32	-0.8
2,492,768	-		EFB2_02358	0.32	-0.2
2,492,771	+		EFB2_02358	0.32	+0.3
2,492,772	-		EFB2_02358	0.33	+2.0
2,492,772	-		EFB2_02358	0.33	-1.0
2,492,790	-		EFB2_02358	0.34	-1.0
2,492,824	+		EFB2_02358	0.36	+1.1
2,492,825	-		EFB2_02358	0.36	-2.0
2,492,910	-		EFB2_02358	0.42	-1.2
2,492,910	-		EFB2_02358	0.42	+2.7
2,492,910	-		EFB2_02358	0.42	+0.1
2,492,910	-		EFB2_02358	0.42	-0.6
2,492,910	-		EFB2_02358	0.42	+0.4
2,492,911	+		EFB2_02358	0.42	-1.2
2,492,912	-		EFB2_02358	0.42	+1.4
2,492,912	-		EFB2_02358	0.42	+1.3
2,492,912	-		EFB2_02358	0.42	-1.4
2,492,912	-		EFB2_02358	0.42	-2.0
2,492,912	-		EFB2_02358	0.42	-1.7
2,492,928	-		EFB2_02358	0.43	+0.2
2,492,928	-		EFB2_02358	0.43	+0.5
2,492,966	+		EFB2_02358	0.45	+0.3
2,493,012	-		EFB2_02358	0.49	+0.3
2,493,133	+		EFB2_02358	0.57	-0.1
2,493,133	+		EFB2_02358	0.57	+0.3
2,493,133	+		EFB2_02358	0.57	+0.1
2,493,134	-		EFB2_02358	0.57	-0.5
2,493,134	-		EFB2_02358	0.57	-1.5
2,493,134	-		EFB2_02358	0.57	+0.5
2,493,134	-		EFB2_02358	0.57	+0.9
2,493,134	-		EFB2_02358	0.57	+2.0
2,493,134	-		EFB2_02358	0.57	-0.2
2,493,140	+		EFB2_02358	0.57	-0.3
2,493,140	+		EFB2_02358	0.57	+0.3
2,493,141	-		EFB2_02358	0.57	-0.2
2,493,167	-		EFB2_02358	0.59	+1.4
2,493,167	-		EFB2_02358	0.59	-0.3
2,493,167	-		EFB2_02358	0.59	+0.7