Strain Fitness in Escherichia fergusonii Becca around EFB2_02293

Experiment: phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2)
2,428,883	+		EFB2_02292	0.35	-0.3
2,428,883	+		EFB2_02292	0.35	+0.3
2,428,883	+		EFB2_02292	0.35	+0.5
2,428,883	+		EFB2_02292	0.35	-2.0
2,428,884	-		EFB2_02292	0.35	+1.9
2,428,884	-		EFB2_02292	0.35	-1.7
2,428,884	-		EFB2_02292	0.35	-0.4
2,428,884	-		EFB2_02292	0.35	-1.2
2,428,895	-		EFB2_02292	0.36	-2.0
2,428,895	-		EFB2_02292	0.36	+0.5
2,428,895	-		EFB2_02292	0.36	+1.4
2,428,947	-		EFB2_02292	0.40	+2.6
2,428,992	-		EFB2_02292	0.43	+0.4
2,429,039	+		EFB2_02292	0.47	-1.6
2,429,039	+		EFB2_02292	0.47	+2.6
2,429,039	+		EFB2_02292	0.47	-1.3
2,429,040	-		EFB2_02292	0.47	-0.2
2,429,042	-		EFB2_02292	0.47	-0.7
2,429,042	-		EFB2_02292	0.47	+1.5
2,429,042	-		EFB2_02292	0.47	+0.5
2,429,114	+		EFB2_02292	0.53	-0.7
2,429,120	+		EFB2_02292	0.53	+0.7
2,429,120	+		EFB2_02292	0.53	+2.7
2,429,154	+		EFB2_02292	0.56	-0.4
2,429,155	-		EFB2_02292	0.56	-0.3
2,429,155	-		EFB2_02292	0.56	-1.3
2,429,155	-		EFB2_02292	0.56	+2.6
2,429,155	-		EFB2_02292	0.56	+1.1
2,429,155	-		EFB2_02292	0.56	+0.7
2,429,165	+		EFB2_02292	0.57	-1.0
2,429,180	-		EFB2_02292	0.58	-2.1
2,429,180	-		EFB2_02292	0.58	+1.3
2,429,273	+		EFB2_02292	0.65	+0.3
2,429,273	+		EFB2_02292	0.65	-1.4
2,429,273	+		EFB2_02292	0.65	+0.3
2,429,406	+		EFB2_02292	0.76	+2.0
2,429,406	+		EFB2_02292	0.76	-0.3
2,429,406	+		EFB2_02292	0.76	-1.6
2,429,406	+		EFB2_02292	0.76	-2.4
2,429,406	+		EFB2_02292	0.76	-1.5
2,429,406	+		EFB2_02292	0.76	-0.9
2,429,407	-		EFB2_02292	0.76	+0.9
2,429,407	-		EFB2_02292	0.76	+0.3
2,429,411	+		EFB2_02292	0.76	-0.6
2,429,411	+		EFB2_02292	0.76	-0.5
2,429,411	+		EFB2_02292	0.76	-1.3
2,429,411	+		EFB2_02292	0.76	-0.8
2,429,411	+		EFB2_02292	0.76	+1.1
2,429,411	+		EFB2_02292	0.76	+0.9
2,429,411	+		EFB2_02292	0.76	+0.7
2,429,411	+		EFB2_02292	0.76	+4.7
2,429,412	-		EFB2_02292	0.76	-0.3
2,429,412	-		EFB2_02292	0.76	+0.5
2,429,412	-		EFB2_02292	0.76	-0.9
2,429,412	-		EFB2_02292	0.76	+0.6
2,429,412	-		EFB2_02292	0.76	-0.0
2,429,413	+		EFB2_02292	0.76	+1.2
2,429,413	+		EFB2_02292	0.76	-1.7
2,429,413	+		EFB2_02292	0.76	+0.3
2,429,413	+		EFB2_02292	0.76	-1.6
2,429,413	+		EFB2_02292	0.76	+0.8
2,429,413	+		EFB2_02292	0.76	+1.4
2,429,413	+		EFB2_02292	0.76	+0.7
2,429,414	-		EFB2_02292	0.76	-0.7
2,429,414	-		EFB2_02292	0.76	+0.3
2,429,414	-		EFB2_02292	0.76	-0.6
2,429,414	-		EFB2_02292	0.76	-0.8
2,429,414	-		EFB2_02292	0.76	-1.6
2,429,414	-		EFB2_02292	0.76	-1.6
2,429,414	-		EFB2_02292	0.76	+1.8
2,429,414	-		EFB2_02292	0.76	+0.3
2,429,518	-		EFB2_02292	0.84	-0.6
2,429,546	+		EFB2_02292	0.86	+0.5
2,429,547	-		EFB2_02292	0.87	-0.7
2,429,547	-		EFB2_02292	0.87	+1.1
2,429,569	+		EFB2_02292	0.88	-1.3
2,429,594	+				+1.7
2,429,594	+				+1.9
2,429,594	+				-0.3
2,429,619	+				-1.3
2,429,620	-				-2.2
2,429,726	-				+0.9
2,429,726	-				-0.9
2,429,747	+				+1.3
2,429,747	+				+1.7
2,429,747	+				+2.7
2,429,776	+				+1.6
2,429,777	-				-0.8
2,429,815	+				+1.6
2,429,815	+				-2.0
2,429,815	+				+1.7
2,429,815	+				+1.1
2,429,815	+				+0.9
2,429,816	-				+1.7
2,429,816	-				+2.7
2,429,816	-				+0.3
2,429,816	-				+1.0
2,429,816	-				-0.3
2,429,816	-				-0.2
2,429,816	-				-2.0
2,429,816	-				-1.7
2,429,819	+				+0.9
2,429,820	-				+1.2
2,429,836	+				-0.9
2,429,845	+				-1.2
2,429,845	+				-0.1
2,429,845	+				+2.0
2,429,845	+				+0.7
2,429,845	+				-0.2
2,429,845	+				+2.7
2,429,845	+				+3.1
2,429,845	+				-0.3
2,429,845	+				-0.5
2,429,845	+				+1.7
2,429,846	-				+2.5
2,429,846	-				-0.5
2,429,846	-				-0.5
2,429,846	-				+0.8
2,429,846	-				+0.7
2,429,846	-				+0.1
2,429,846	-				-3.1
2,429,846	-				+0.8
2,429,846	-				+0.6
2,429,846	-				+2.1
2,429,846	-				+0.9
2,429,868	-				+0.3
2,429,873	+		EFB2_02293	0.10	-1.7
2,429,874	-		EFB2_02293	0.11	-1.4
2,429,874	-		EFB2_02293	0.11	+0.6
2,429,874	-		EFB2_02293	0.11	-0.5
2,429,877	-		EFB2_02293	0.11	+0.9
2,429,915	+		EFB2_02293	0.15	-1.7
2,429,915	+		EFB2_02293	0.15	-0.4
2,429,915	+		EFB2_02293	0.15	+0.5
2,429,915	+		EFB2_02293	0.15	+0.8
2,429,915	+		EFB2_02293	0.15	+0.7
2,429,915	+		EFB2_02293	0.15	+0.3
2,429,916	-		EFB2_02293	0.15	-1.3
2,429,916	-		EFB2_02293	0.15	+0.9
2,429,916	-		EFB2_02293	0.15	+1.3
2,429,916	-		EFB2_02293	0.15	+0.3
2,429,916	-		EFB2_02293	0.15	+2.7
2,429,916	-		EFB2_02293	0.15	+0.3
2,429,916	-		EFB2_02293	0.15	-1.3
2,429,916	-		EFB2_02293	0.15	+0.9
2,429,916	-		EFB2_02293	0.15	+1.3
2,429,950	+		EFB2_02293	0.19	+1.8
2,429,950	+		EFB2_02293	0.19	-0.8
2,429,951	-		EFB2_02293	0.19	-0.1
2,429,987	+		EFB2_02293	0.23	+1.4
2,429,987	+		EFB2_02293	0.23	+0.1
2,429,987	+		EFB2_02293	0.23	-0.8
2,429,987	+		EFB2_02293	0.23	+2.5
2,429,988	-		EFB2_02293	0.23	-1.5
2,429,988	-		EFB2_02293	0.23	+0.5
2,429,988	-		EFB2_02293	0.23	-0.3
2,429,988	-		EFB2_02293	0.23	-0.7
2,429,988	-		EFB2_02293	0.23	-1.0
2,429,988	-		EFB2_02293	0.23	+0.8
2,429,988	-		EFB2_02293	0.23	-2.2
2,429,989	+		EFB2_02293	0.23	+1.2
2,429,989	+		EFB2_02293	0.23	+0.5
2,429,989	+		EFB2_02293	0.23	-0.8
2,429,989	+		EFB2_02293	0.23	+0.8
2,429,989	+		EFB2_02293	0.23	-2.0
2,429,990	-		EFB2_02293	0.23	-1.4
2,429,990	-		EFB2_02293	0.23	+1.1
2,429,990	-		EFB2_02293	0.23	-1.4
2,429,990	-		EFB2_02293	0.23	-1.4
2,429,990	-		EFB2_02293	0.23	+1.1
2,429,990	-		EFB2_02293	0.23	-1.2
2,429,990	-		EFB2_02293	0.23	+2.0
2,429,990	-		EFB2_02293	0.23	+0.7
2,429,990	-		EFB2_02293	0.23	-0.3
2,429,990	-		EFB2_02293	0.23	-0.8
2,429,990	-		EFB2_02293	0.23	-2.2
2,429,990	-		EFB2_02293	0.23	-1.8
2,430,208	+		EFB2_02293	0.46	+1.7
2,430,208	+		EFB2_02293	0.46	+0.6
2,430,208	+		EFB2_02293	0.46	-1.8
2,430,208	+		EFB2_02293	0.46	-0.5
2,430,208	+		EFB2_02293	0.46	+2.9
2,430,208	+		EFB2_02293	0.46	+2.0
2,430,208	+		EFB2_02293	0.46	-2.1
2,430,208	+		EFB2_02293	0.46	-0.8
2,430,208	+		EFB2_02293	0.46	+0.5
2,430,208	+		EFB2_02293	0.46	+1.1
2,430,208	+		EFB2_02293	0.46	-1.8
2,430,208	+		EFB2_02293	0.46	-2.3
2,430,208	+		EFB2_02293	0.46	-0.2
2,430,208	+		EFB2_02293	0.46	-0.9
2,430,208	+		EFB2_02293	0.46	-1.4
2,430,208	+		EFB2_02293	0.46	+0.7
2,430,208	+		EFB2_02293	0.46	+1.0
2,430,208	+		EFB2_02293	0.46	+2.4
2,430,208	+		EFB2_02293	0.46	-2.7
2,430,208	+		EFB2_02293	0.46	-0.9
2,430,208	+		EFB2_02293	0.46	-1.8
2,430,208	+		EFB2_02293	0.46	+0.1
2,430,208	+		EFB2_02293	0.46	-0.7
2,430,208	+		EFB2_02293	0.46	-1.6
2,430,208	+		EFB2_02293	0.46	+0.5
2,430,208	+		EFB2_02293	0.46	+2.4
2,430,208	+		EFB2_02293	0.46	+0.3
2,430,208	+		EFB2_02293	0.46	+0.5
2,430,208	+		EFB2_02293	0.46	-0.5
2,430,208	+		EFB2_02293	0.46	+1.2
2,430,208	+		EFB2_02293	0.46	+1.1
2,430,208	+		EFB2_02293	0.46	-1.2
2,430,208	+		EFB2_02293	0.46	+0.3
2,430,208	+		EFB2_02293	0.46	-2.0
2,430,208	+		EFB2_02293	0.46	-2.3
2,430,208	+		EFB2_02293	0.46	+2.8
2,430,208	+		EFB2_02293	0.46	+2.1
2,430,208	+		EFB2_02293	0.46	-0.7
2,430,208	+		EFB2_02293	0.46	-2.7
2,430,208	+		EFB2_02293	0.46	-1.4
2,430,208	+		EFB2_02293	0.46	+1.5
2,430,209	-		EFB2_02293	0.46	+0.3
2,430,209	-		EFB2_02293	0.46	+2.2
2,430,209	-		EFB2_02293	0.46	+1.1
2,430,209	-		EFB2_02293	0.46	-2.4
2,430,209	-		EFB2_02293	0.46	+0.7
2,430,209	-		EFB2_02293	0.46	-1.3
2,430,209	-		EFB2_02293	0.46	+2.2
2,430,209	-		EFB2_02293	0.46	-0.8
2,430,209	-		EFB2_02293	0.46	+0.8
2,430,209	-		EFB2_02293	0.46	-0.6
2,430,209	-		EFB2_02293	0.46	-2.3
2,430,209	-		EFB2_02293	0.46	-2.1
2,430,209	-		EFB2_02293	0.46	+1.6
2,430,209	-		EFB2_02293	0.46	-0.2
2,430,209	-		EFB2_02293	0.46	+0.4
2,430,209	-		EFB2_02293	0.46	-0.9
2,430,209	-		EFB2_02293	0.46	-0.9
2,430,209	-		EFB2_02293	0.46	+0.6
2,430,209	-		EFB2_02293	0.46	-1.3
2,430,209	-		EFB2_02293	0.46	+1.0
2,430,209	-		EFB2_02293	0.46	+0.9
2,430,209	-		EFB2_02293	0.46	-0.3
2,430,209	-		EFB2_02293	0.46	+2.7
2,430,209	-		EFB2_02293	0.46	+2.1
2,430,209	-		EFB2_02293	0.46	-1.1
2,430,209	-		EFB2_02293	0.46	-0.2
2,430,209	-		EFB2_02293	0.46	-1.9
2,430,209	-		EFB2_02293	0.46	-1.7
2,430,209	-		EFB2_02293	0.46	-0.3
2,430,209	-		EFB2_02293	0.46	-0.3
2,430,209	-		EFB2_02293	0.46	-0.9
2,430,209	-		EFB2_02293	0.46	-0.2
2,430,209	-		EFB2_02293	0.46	-1.0
2,430,209	-		EFB2_02293	0.46	+1.0
2,430,209	-		EFB2_02293	0.46	+1.0
2,430,209	-		EFB2_02293	0.46	-1.3
2,430,209	-		EFB2_02293	0.46	+1.7
2,430,209	-		EFB2_02293	0.46	+0.4
2,430,209	-		EFB2_02293	0.46	-1.0
2,430,209	-		EFB2_02293	0.46	-0.8
2,430,214	-		EFB2_02293	0.47	+2.3
2,430,214	-		EFB2_02293	0.47	+0.4
2,430,242	+		EFB2_02293	0.50	+0.3
2,430,242	+		EFB2_02293	0.50	+1.1
2,430,242	+		EFB2_02293	0.50	+0.2
2,430,242	+		EFB2_02293	0.50	-0.7
2,430,243	-		EFB2_02293	0.50	+0.9
2,430,243	-		EFB2_02293	0.50	-2.7
2,430,243	-		EFB2_02293	0.50	+3.4
2,430,275	+		EFB2_02293	0.53	+2.7
2,430,275	+		EFB2_02293	0.53	+0.3
2,430,275	+		EFB2_02293	0.53	+0.7
2,430,275	+		EFB2_02293	0.53	+1.7
2,430,275	+		EFB2_02293	0.53	+1.1
2,430,275	+		EFB2_02293	0.53	-0.2
2,430,275	+		EFB2_02293	0.53	+0.4
2,430,275	+		EFB2_02293	0.53	+0.2
2,430,276	-		EFB2_02293	0.53	+0.3
2,430,276	-		EFB2_02293	0.53	-1.6
2,430,276	-		EFB2_02293	0.53	-0.0
2,430,276	-		EFB2_02293	0.53	+1.4
2,430,281	+		EFB2_02293	0.54	-1.5
2,430,334	+		EFB2_02293	0.60	+1.8
2,430,334	+		EFB2_02293	0.60	-0.9
2,430,334	+		EFB2_02293	0.60	+1.2
2,430,334	+		EFB2_02293	0.60	+0.5
2,430,334	+		EFB2_02293	0.60	+0.7
2,430,335	-		EFB2_02293	0.60	-1.3
2,430,335	-		EFB2_02293	0.60	+4.2
2,430,335	-		EFB2_02293	0.60	-0.2
2,430,335	-		EFB2_02293	0.60	+0.4
2,430,335	-		EFB2_02293	0.60	+2.7
2,430,335	-		EFB2_02293	0.60	+1.7
2,430,335	-		EFB2_02293	0.60	-0.8
2,430,335	-		EFB2_02293	0.60	-1.0
2,430,335	-		EFB2_02293	0.60	-0.9
2,430,335	-		EFB2_02293	0.60	-1.7
2,430,335	-		EFB2_02293	0.60	+1.7
2,430,420	+		EFB2_02293	0.69	+1.7
2,430,420	+		EFB2_02293	0.69	-1.2
2,430,421	-		EFB2_02293	0.69	+3.0
2,430,440	+		EFB2_02293	0.71	+1.2
2,430,441	-		EFB2_02293	0.71	-0.9
2,430,462	+		EFB2_02293	0.73	+1.3
2,430,462	+		EFB2_02293	0.73	-0.5
2,430,463	-		EFB2_02293	0.73	+0.1
2,430,470	+		EFB2_02293	0.74	-1.7
2,430,471	-		EFB2_02293	0.74	+1.3
2,430,482	+		EFB2_02293	0.75	-2.6
2,430,482	+		EFB2_02293	0.75	+1.1
2,430,482	+		EFB2_02293	0.75	+2.1
2,430,483	-		EFB2_02293	0.75	-1.0
2,430,483	-		EFB2_02293	0.75	-0.5
2,430,524	+		EFB2_02293	0.80	+2.3
2,430,557	-		EFB2_02293	0.83	+0.6
2,430,581	+		EFB2_02293	0.86	+0.6
2,430,581	+		EFB2_02293	0.86	-0.8
2,430,581	+		EFB2_02293	0.86	+2.9
2,430,581	+		EFB2_02293	0.86	+0.3
2,430,581	+		EFB2_02293	0.86	+0.6
2,430,581	+		EFB2_02293	0.86	-0.9
2,430,581	+		EFB2_02293	0.86	-1.4
2,430,581	+		EFB2_02293	0.86	-2.1
2,430,581	+		EFB2_02293	0.86	+1.1
2,430,582	-		EFB2_02293	0.86	+2.7
2,430,582	-		EFB2_02293	0.86	+3.8
2,430,582	-		EFB2_02293	0.86	+2.7
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