Strain Fitness in Escherichia fergusonii Becca around EFB2_02291

Experiment: phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2)
2,427,148	+		EFB2_02290	0.43	+0.4
2,427,148	+		EFB2_02290	0.43	+0.7
2,427,200	+		EFB2_02290	0.46	+2.5
2,427,220	-		EFB2_02290	0.47	-1.9
2,427,220	-		EFB2_02290	0.47	+1.1
2,427,244	+		EFB2_02290	0.49	+1.3
2,427,244	+		EFB2_02290	0.49	-0.8
2,427,244	+		EFB2_02290	0.49	-1.3
2,427,244	+		EFB2_02290	0.49	+2.1
2,427,245	-		EFB2_02290	0.49	+1.7
2,427,245	-		EFB2_02290	0.49	-1.0
2,427,299	-		EFB2_02290	0.52	-0.3
2,427,299	-		EFB2_02290	0.52	+1.1
2,427,302	+		EFB2_02290	0.52	-2.0
2,427,302	+		EFB2_02290	0.52	+1.7
2,427,303	-		EFB2_02290	0.53	-3.0
2,427,341	+		EFB2_02290	0.55	+0.2
2,427,341	+		EFB2_02290	0.55	-1.2
2,427,341	+		EFB2_02290	0.55	-1.1
2,427,388	+		EFB2_02290	0.58	-1.6
2,427,389	-		EFB2_02290	0.58	+2.3
2,427,389	-		EFB2_02290	0.58	+1.1
2,427,427	-		EFB2_02290	0.60	-0.1
2,427,448	+		EFB2_02290	0.61	-0.8
2,427,448	+		EFB2_02290	0.61	-1.3
2,427,448	+		EFB2_02290	0.61	-0.4
2,427,454	+		EFB2_02290	0.62	-0.2
2,427,454	+		EFB2_02290	0.62	+2.1
2,427,454	+		EFB2_02290	0.62	-0.5
2,427,462	-		EFB2_02290	0.62	+2.7
2,427,499	+		EFB2_02290	0.64	-0.2
2,427,499	+		EFB2_02290	0.64	+2.7
2,427,499	+		EFB2_02290	0.64	+0.9
2,427,500	-		EFB2_02290	0.64	-0.5
2,427,500	-		EFB2_02290	0.64	+1.7
2,427,500	-		EFB2_02290	0.64	-1.8
2,427,503	+		EFB2_02290	0.65	-0.2
2,427,503	+		EFB2_02290	0.65	+0.8
2,427,503	+		EFB2_02290	0.65	-0.3
2,427,503	+		EFB2_02290	0.65	+0.4
2,427,503	+		EFB2_02290	0.65	+1.1
2,427,503	+		EFB2_02290	0.65	-1.5
2,427,504	-		EFB2_02290	0.65	-0.9
2,427,504	-		EFB2_02290	0.65	+0.1
2,427,504	-		EFB2_02290	0.65	+1.9
2,427,515	+		EFB2_02290	0.65	-1.3
2,427,515	+		EFB2_02290	0.65	-1.4
2,427,516	-		EFB2_02290	0.65	-0.5
2,427,556	+		EFB2_02290	0.68	+0.1
2,427,557	-		EFB2_02290	0.68	-0.5
2,427,578	+		EFB2_02290	0.69	-1.3
2,427,578	+		EFB2_02290	0.69	-0.8
2,427,578	+		EFB2_02290	0.69	+0.8
2,427,578	+		EFB2_02290	0.69	-2.0
2,427,579	-		EFB2_02290	0.69	-2.6
2,427,579	-		EFB2_02290	0.69	-0.3
2,427,579	-		EFB2_02290	0.69	-0.5
2,427,579	-		EFB2_02290	0.69	+1.6
2,427,632	+		EFB2_02290	0.72	-1.8
2,427,633	-		EFB2_02290	0.73	-0.2
2,427,633	-		EFB2_02290	0.73	-1.6
2,427,633	-		EFB2_02290	0.73	-1.9
2,427,633	-		EFB2_02290	0.73	-1.9
2,427,633	-		EFB2_02290	0.73	-0.1
2,427,633	-		EFB2_02290	0.73	+1.7
2,427,633	-		EFB2_02290	0.73	+1.7
2,427,665	+		EFB2_02290	0.74	+1.1
2,427,666	-		EFB2_02290	0.75	-1.5
2,427,672	-		EFB2_02290	0.75	-1.0
2,427,689	-		EFB2_02290	0.76	-0.3
2,427,727	+		EFB2_02290	0.78	-1.0
2,427,727	+		EFB2_02290	0.78	-0.2
2,427,727	+		EFB2_02290	0.78	+2.7
2,427,727	+		EFB2_02290	0.78	+3.2
2,427,728	-		EFB2_02290	0.78	-0.7
2,427,728	-		EFB2_02290	0.78	-1.5
2,427,728	-		EFB2_02290	0.78	+1.1
2,427,728	-		EFB2_02290	0.78	-0.7
2,427,768	-		EFB2_02290	0.81	-1.3
2,427,810	+		EFB2_02290	0.83	+0.7
2,427,810	+		EFB2_02290	0.83	+0.1
2,427,810	+		EFB2_02290	0.83	+1.2
2,427,810	+		EFB2_02290	0.83	+0.3
2,427,811	-		EFB2_02290	0.83	+1.5
2,427,811	-		EFB2_02290	0.83	+1.4
2,427,811	-		EFB2_02290	0.83	-1.7
2,427,814	+		EFB2_02290	0.84	-0.3
2,427,814	+		EFB2_02290	0.84	-1.7
2,427,814	+		EFB2_02290	0.84	+1.1
2,427,815	-		EFB2_02290	0.84	+1.8
2,427,821	-		EFB2_02290	0.84	+1.8
2,427,881	+		EFB2_02290	0.88	-1.2
2,427,882	-		EFB2_02290	0.88	+1.7
2,427,925	+				-2.0
2,427,925	+				-1.7
2,427,926	-				-1.4
2,427,926	-				-0.6
2,427,927	+				+1.2
2,427,927	+				+1.4
2,427,927	+				-1.9
2,427,927	+				-0.2
2,427,927	+				+1.2
2,427,927	+				-0.3
2,427,927	+				-1.4
2,427,927	+				+5.4
2,427,927	+				+1.7
2,427,927	+				+3.1
2,427,928	-				+1.3
2,427,928	-				+0.6
2,427,928	-				+1.1
2,427,928	-				-1.3
2,427,928	-				-0.4
2,427,928	-				+0.0
2,427,928	-				+1.1
2,427,928	-				+1.9
2,427,928	-				+1.5
2,427,928	-				+0.3
2,427,928	-				+3.9
2,427,928	-				-1.2
2,427,928	-				-0.6
2,427,928	-				-0.3
2,427,928	-				+0.0
2,427,928	-				-2.7
2,427,928	-				-0.3
2,427,928	-				-1.8
2,427,928	-				-1.9
2,427,928	-				-1.9
2,427,928	-				-1.4
2,427,928	-				+1.1
2,427,928	-				-1.0
2,427,933	+				+2.0
2,427,933	+				-1.7
2,427,933	+				+1.3
2,427,933	+				+0.3
2,427,933	+				-1.2
2,427,933	+				-1.3
2,427,933	+				+0.3
2,427,933	+				-0.2
2,427,933	+				-2.2
2,427,933	+				+0.0
2,427,933	+				-0.7
2,427,933	+				+1.5
2,427,933	+				+1.5
2,427,933	+				-0.1
2,427,934	-				+0.1
2,427,934	-				-2.2
2,427,934	-				-1.3
2,427,934	-				+0.1
2,427,934	-				+2.0
2,427,934	-				+1.0
2,427,934	-				-1.3
2,427,934	-				+1.1
2,427,934	-				+0.2
2,427,934	-				-1.7
2,427,934	-				-1.0
2,427,934	-				-1.5
2,427,934	-				+0.2
2,427,999	+				-1.4
2,428,000	-				-0.9
2,428,025	+				+0.5
2,428,041	+				-0.2
2,428,070	+				+1.1
2,428,149	-				+0.3
2,428,181	+		EFB2_02291	0.14	-0.8
2,428,182	-		EFB2_02291	0.14	-0.0
2,428,200	+		EFB2_02291	0.20	-2.0
2,428,201	-		EFB2_02291	0.20	-1.3
2,428,201	-		EFB2_02291	0.20	-1.3
2,428,201	-		EFB2_02291	0.20	-2.2
2,428,284	+		EFB2_02291	0.49	-1.9
2,428,284	+		EFB2_02291	0.49	-1.7
2,428,284	+		EFB2_02291	0.49	+0.7
2,428,285	-		EFB2_02291	0.49	-1.3
2,428,285	-		EFB2_02291	0.49	+1.1
2,428,285	-		EFB2_02291	0.49	-2.7
2,428,285	-		EFB2_02291	0.49	-1.3
2,428,285	-		EFB2_02291	0.49	+0.8
2,428,286	+		EFB2_02291	0.49	-1.7
2,428,286	+		EFB2_02291	0.49	-2.2
2,428,287	-		EFB2_02291	0.50	-4.4
2,428,287	-		EFB2_02291	0.50	+2.1
2,428,287	-		EFB2_02291	0.50	-0.1
2,428,287	-		EFB2_02291	0.50	+0.1
2,428,287	-		EFB2_02291	0.50	+0.1
2,428,287	-		EFB2_02291	0.50	-0.7
2,428,287	-		EFB2_02291	0.50	-0.9
2,428,287	-		EFB2_02291	0.50	-1.4
2,428,313	-		EFB2_02291	0.59	-0.3
2,428,313	-		EFB2_02291	0.59	+1.0
2,428,356	+		EFB2_02291	0.73	+0.8
2,428,357	-		EFB2_02291	0.73	-1.3
2,428,387	-		EFB2_02291	0.84	-0.2
2,428,419	+				-1.4
2,428,420	-				+1.1
2,428,452	-				+0.6
2,428,550	+				-1.7
2,428,550	+				+3.2
2,428,550	+				+4.1
2,428,550	+				+1.5
2,428,550	+				+3.0
2,428,550	+				-1.0
2,428,550	+				+1.8
2,428,550	+				+0.7
2,428,550	+				-1.9
2,428,550	+				-0.7
2,428,550	+				-1.5
2,428,551	-				+0.0
2,428,551	-				-0.3
2,428,551	-				-0.7
2,428,551	-				+0.4
2,428,551	-				-2.3
2,428,551	-				-2.1
2,428,551	-				+1.9
2,428,551	-				-0.6
2,428,551	-				-0.3
2,428,551	-				+0.1
2,428,649	+		EFB2_02292	0.17	+1.7
2,428,650	-		EFB2_02292	0.17	-0.7
2,428,650	-		EFB2_02292	0.17	+0.7
2,428,650	-		EFB2_02292	0.17	+0.6
2,428,678	+		EFB2_02292	0.19	-1.2
2,428,678	+		EFB2_02292	0.19	+0.7
2,428,679	-		EFB2_02292	0.19	-2.7
2,428,679	-		EFB2_02292	0.19	+0.9
2,428,679	-		EFB2_02292	0.19	-1.2
2,428,679	-		EFB2_02292	0.19	+1.4
2,428,764	+		EFB2_02292	0.26	+2.7
2,428,765	-		EFB2_02292	0.26	-0.2
2,428,883	+		EFB2_02292	0.35	-0.3
2,428,883	+		EFB2_02292	0.35	+0.3
2,428,883	+		EFB2_02292	0.35	+0.5
2,428,883	+		EFB2_02292	0.35	-2.0
2,428,884	-		EFB2_02292	0.35	+1.9
2,428,884	-		EFB2_02292	0.35	-1.7
2,428,884	-		EFB2_02292	0.35	-0.4
2,428,884	-		EFB2_02292	0.35	-1.2
2,428,895	-		EFB2_02292	0.36	-2.0
2,428,895	-		EFB2_02292	0.36	+0.5
2,428,895	-		EFB2_02292	0.36	+1.4
2,428,947	-		EFB2_02292	0.40	+2.6
2,428,992	-		EFB2_02292	0.43	+0.4
2,429,039	+		EFB2_02292	0.47	-1.6
2,429,039	+		EFB2_02292	0.47	+2.6
2,429,039	+		EFB2_02292	0.47	-1.3
2,429,040	-		EFB2_02292	0.47	-0.2
2,429,042	-		EFB2_02292	0.47	-0.7
2,429,042	-		EFB2_02292	0.47	+1.5
2,429,042	-		EFB2_02292	0.47	+0.5
2,429,114	+		EFB2_02292	0.53	-0.7
2,429,120	+		EFB2_02292	0.53	+0.7
2,429,120	+		EFB2_02292	0.53	+2.7
2,429,154	+		EFB2_02292	0.56	-0.4
2,429,155	-		EFB2_02292	0.56	-0.3
2,429,155	-		EFB2_02292	0.56	-1.3
2,429,155	-		EFB2_02292	0.56	+2.6
2,429,155	-		EFB2_02292	0.56	+1.1
2,429,155	-		EFB2_02292	0.56	+0.7
2,429,165	+		EFB2_02292	0.57	-1.0
2,429,180	-		EFB2_02292	0.58	-2.1
2,429,180	-		EFB2_02292	0.58	+1.3
2,429,273	+		EFB2_02292	0.65	+0.3
2,429,273	+		EFB2_02292	0.65	-1.4
2,429,273	+		EFB2_02292	0.65	+0.3
2,429,406	+		EFB2_02292	0.76	+2.0
2,429,406	+		EFB2_02292	0.76	-0.3
2,429,406	+		EFB2_02292	0.76	-1.6
2,429,406	+		EFB2_02292	0.76	-2.4
2,429,406	+		EFB2_02292	0.76	-1.5
2,429,406	+		EFB2_02292	0.76	-0.9
2,429,407	-		EFB2_02292	0.76	+0.9
2,429,407	-		EFB2_02292	0.76	+0.3
2,429,411	+		EFB2_02292	0.76	-0.6
2,429,411	+		EFB2_02292	0.76	-0.5
2,429,411	+		EFB2_02292	0.76	-1.3
2,429,411	+		EFB2_02292	0.76	-0.8
2,429,411	+		EFB2_02292	0.76	+1.1
2,429,411	+		EFB2_02292	0.76	+0.9
2,429,411	+		EFB2_02292	0.76	+0.7
2,429,411	+		EFB2_02292	0.76	+4.7
2,429,412	-		EFB2_02292	0.76	-0.3
2,429,412	-		EFB2_02292	0.76	+0.5
2,429,412	-		EFB2_02292	0.76	-0.9
2,429,412	-		EFB2_02292	0.76	+0.6
2,429,412	-		EFB2_02292	0.76	-0.0
2,429,413	+		EFB2_02292	0.76	+1.2
2,429,413	+		EFB2_02292	0.76	-1.7
2,429,413	+		EFB2_02292	0.76	+0.3
2,429,413	+		EFB2_02292	0.76	-1.6
2,429,413	+		EFB2_02292	0.76	+0.8
2,429,413	+		EFB2_02292	0.76	+1.4
2,429,413	+		EFB2_02292	0.76	+0.7
2,429,414	-		EFB2_02292	0.76	-0.7
2,429,414	-		EFB2_02292	0.76	+0.3
2,429,414	-		EFB2_02292	0.76	-0.6
2,429,414	-		EFB2_02292	0.76	-0.8
2,429,414	-		EFB2_02292	0.76	-1.6
2,429,414	-		EFB2_02292	0.76	-1.6
2,429,414	-		EFB2_02292	0.76	+1.8
2,429,414	-		EFB2_02292	0.76	+0.3