Strain Fitness in Escherichia fergusonii Becca around EFB2_02284

Experiment: phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2)
2,418,173	+		EFB2_02282	0.82	+0.3
2,418,173	+		EFB2_02282	0.82	-1.3
2,418,173	+		EFB2_02282	0.82	-1.6
2,418,173	+		EFB2_02282	0.82	-1.2
2,418,174	-		EFB2_02282	0.82	+0.7
2,418,245	-				-1.7
2,418,245	-				-0.8
2,418,313	+				+0.9
2,418,313	+				+0.4
2,418,313	+				-1.7
2,418,313	+				-1.7
2,418,314	-				-0.7
2,418,314	-				+0.9
2,418,314	-				+0.9
2,418,314	-				-1.0
2,418,316	+				-0.8
2,418,316	+				+0.7
2,418,316	+				-0.7
2,418,317	-				-1.7
2,418,336	+				+0.7
2,418,336	+				-0.2
2,418,336	+				+2.7
2,418,337	-				+3.5
2,418,337	-				+0.1
2,418,337	-				-2.0
2,418,337	-				+4.0
2,418,344	+				+2.1
2,418,349	+				-0.0
2,418,398	+				+1.0
2,418,431	+		EFB2_02283	0.10	+1.1
2,418,431	+		EFB2_02283	0.10	-0.1
2,418,431	+		EFB2_02283	0.10	+2.2
2,418,440	+		EFB2_02283	0.12	-1.7
2,418,440	+		EFB2_02283	0.12	+0.5
2,418,440	+		EFB2_02283	0.12	+2.1
2,418,480	-		EFB2_02283	0.21	-0.8
2,418,508	+		EFB2_02283	0.27	+1.2
2,418,508	+		EFB2_02283	0.27	+1.7
2,418,508	+		EFB2_02283	0.27	+1.1
2,418,508	+		EFB2_02283	0.27	+2.8
2,418,509	-		EFB2_02283	0.27	-1.5
2,418,509	-		EFB2_02283	0.27	+1.1
2,418,509	-		EFB2_02283	0.27	+0.3
2,418,645	-		EFB2_02283	0.56	+1.2
2,418,730	+		EFB2_02283	0.74	+2.3
2,418,730	+		EFB2_02283	0.74	-1.8
2,418,730	+		EFB2_02283	0.74	+0.8
2,418,730	+		EFB2_02283	0.74	+0.3
2,418,731	-		EFB2_02283	0.75	+2.1
2,418,734	+		EFB2_02283	0.75	-0.0
2,418,734	+		EFB2_02283	0.75	+0.2
2,418,735	-		EFB2_02283	0.75	+0.3
2,418,738	+		EFB2_02283	0.76	-0.1
2,418,738	+		EFB2_02283	0.76	-1.8
2,418,738	+		EFB2_02283	0.76	+2.7
2,418,738	+		EFB2_02283	0.76	-0.7
2,418,738	+		EFB2_02283	0.76	-0.3
2,418,738	+		EFB2_02283	0.76	-2.5
2,418,738	+		EFB2_02283	0.76	-2.1
2,418,738	+		EFB2_02283	0.76	+1.9
2,418,739	-		EFB2_02283	0.76	-1.3
2,418,739	-		EFB2_02283	0.76	+2.7
2,418,759	-		EFB2_02283	0.81	+0.3
2,418,759	-		EFB2_02283	0.81	+0.1
2,418,771	-		EFB2_02283	0.83	-0.5
2,418,771	-		EFB2_02283	0.83	-0.5
2,418,810	+				+1.8
2,418,811	-				+2.2
2,418,846	+				+2.0
2,418,846	+				-1.1
2,418,846	+				+3.9
2,418,846	+				-1.6
2,418,846	+				+3.6
2,418,846	+				+0.3
2,418,846	+				-0.4
2,418,846	+				+1.7
2,418,846	+				-1.4
2,418,846	+				+0.1
2,418,846	+				-1.6
2,418,846	+				+0.5
2,418,846	+				+0.7
2,418,846	+				-1.1
2,418,846	+				-1.7
2,418,846	+				-1.4
2,418,847	-				+3.5
2,418,847	-				+0.1
2,418,847	-				+0.7
2,418,847	-				+2.7
2,418,847	-				+0.7
2,418,847	-				+0.1
2,418,847	-				-0.6
2,418,847	-				+1.4
2,418,847	-				-2.0
2,418,847	-				+1.9
2,418,847	-				+0.9
2,418,847	-				+2.0
2,418,847	-				-0.9
2,418,847	-				-0.5
2,418,847	-				-1.6
2,418,847	-				+0.6
2,418,849	+				+0.6
2,418,849	+				+0.2
2,418,849	+				+0.4
2,418,849	+				-0.5
2,418,849	+				-0.6
2,418,849	+				+1.0
2,418,850	-				-1.2
2,418,850	-				-1.7
2,418,850	-				+1.1
2,418,874	+				-2.7
2,418,874	+				-0.9
2,418,874	+				-0.9
2,418,875	-				+1.0
2,418,875	-				+3.4
2,418,890	+				-1.1
2,418,890	+				-0.1
2,418,890	+				-1.2
2,418,890	+				+2.1
2,418,890	+				-0.9
2,418,900	+				-1.0
2,418,900	+				-1.6
2,418,900	+				-1.2
2,418,901	-				+3.1
2,418,901	-				-0.2
2,418,901	-				-0.1
2,418,906	-				+1.0
2,418,908	+				+0.1
2,418,908	+				-0.5
2,418,908	+				-1.0
2,418,908	+				-1.4
2,418,909	-				-1.4
2,418,930	+				+2.4
2,418,940	-				-0.0
2,418,991	-				+0.7
2,419,029	+				-2.0
2,419,029	+				+1.2
2,419,030	-				+0.9
2,419,036	+				-0.7
2,419,036	+				-0.2
2,419,054	-				+0.3
2,419,154	+				-2.0
2,419,183	+		EFB2_02284	0.12	-1.2
2,419,183	+		EFB2_02284	0.12	+1.4
2,419,211	+		EFB2_02284	0.16	+2.7
2,419,240	+		EFB2_02284	0.20	-1.4
2,419,240	+		EFB2_02284	0.20	-0.8
2,419,250	+		EFB2_02284	0.22	-2.6
2,419,251	-		EFB2_02284	0.22	-1.7
2,419,251	-		EFB2_02284	0.22	-1.0
2,419,251	-		EFB2_02284	0.22	+2.2
2,419,273	+		EFB2_02284	0.25	+0.7
2,419,328	+		EFB2_02284	0.33	-0.6
2,419,328	+		EFB2_02284	0.33	-1.9
2,419,346	+		EFB2_02284	0.35	+0.1
2,419,368	-		EFB2_02284	0.38	+1.2
2,419,372	+		EFB2_02284	0.39	+1.0
2,419,372	+		EFB2_02284	0.39	+0.8
2,419,379	-		EFB2_02284	0.40	+3.5
2,419,389	-		EFB2_02284	0.41	+0.4
2,419,405	+		EFB2_02284	0.43	-0.3
2,419,516	+		EFB2_02284	0.59	+0.9
2,419,516	+		EFB2_02284	0.59	+0.3
2,419,535	+		EFB2_02284	0.62	+1.6
2,419,535	+		EFB2_02284	0.62	-0.7
2,419,535	+		EFB2_02284	0.62	-0.6
2,419,535	+		EFB2_02284	0.62	-0.9
2,419,536	-		EFB2_02284	0.62	+0.4
2,419,538	+		EFB2_02284	0.62	-0.8
2,419,538	+		EFB2_02284	0.62	-1.2
2,419,539	-		EFB2_02284	0.62	-0.7
2,419,598	+		EFB2_02284	0.70	+1.1
2,419,724	+		EFB2_02284	0.88	-0.5
2,419,775	+				+1.3
2,419,777	+				+0.8
2,419,777	+				+1.6
2,419,786	+				+0.8
2,419,829	+				-0.3
2,419,830	-				+0.9
2,419,830	-				+1.3
2,419,830	-				+1.1
2,419,830	-				+0.3
2,419,840	+				-2.4
2,419,848	+				-0.5
2,419,848	+				-0.1
2,419,848	+				-0.8
2,419,848	+				-0.3
2,419,848	+				-1.4
2,419,848	+				+1.1
2,419,848	+				+0.5
2,419,848	+				+2.4
2,419,849	-				+1.1
2,419,849	-				+2.1
2,419,853	+				+1.2
2,419,853	+				-1.2
2,419,870	+				-0.5
2,419,870	+				-1.5
2,419,870	+				+1.5
2,419,870	+				+0.4
2,419,870	+				+0.9
2,419,870	+				-0.1
2,419,870	+				+3.2
2,419,870	+				-2.2
2,419,870	+				-1.5
2,419,870	+				-1.9
2,419,870	+				-1.8
2,419,870	+				-1.6
2,419,870	+				-1.2
2,419,870	+				+0.2
2,419,870	+				+0.6
2,419,870	+				-1.5
2,419,870	+				+0.9
2,419,870	+				-0.7
2,419,870	+				-1.3
2,419,870	+				+1.5
2,419,871	-				+1.7
2,419,871	-				-1.7
2,419,871	-				-0.4
2,419,871	-				-1.9
2,419,871	-				+1.3
2,419,885	+				+1.8
2,419,885	+				-1.9
2,419,885	+				+1.1
2,419,886	-				-1.0
2,419,919	+				+0.6
2,419,919	+				+1.8
2,419,919	+				-1.3
2,419,920	-				-2.2
2,419,920	-				-0.7
2,419,920	-				-0.3
2,419,920	-				-1.3
2,419,920	-				-0.3
2,419,920	-				+2.4
2,419,920	-				+2.3
2,419,921	+				-0.3
2,419,921	+				+1.7
2,419,937	-				+0.8
2,419,948	+				+0.7
2,419,948	+				+1.2
2,419,948	+				-0.8
2,419,948	+				+0.8
2,419,949	-				-0.1
2,419,949	-				-0.2
2,419,969	+				-1.3
2,419,969	+				+0.0
2,419,969	+				+2.7
2,419,970	-				+1.8
2,419,996	+				+1.6
2,419,997	-				-1.1
2,420,049	+		EFB2_02285	0.12	+1.3
2,420,049	+		EFB2_02285	0.12	+2.0
2,420,050	-		EFB2_02285	0.12	-1.0
2,420,050	-		EFB2_02285	0.12	-0.5
2,420,059	+		EFB2_02285	0.13	+2.3
2,420,081	+		EFB2_02285	0.15	-0.5
2,420,081	+		EFB2_02285	0.15	+2.0
2,420,081	+		EFB2_02285	0.15	-0.7
2,420,082	-		EFB2_02285	0.15	+1.5
2,420,082	-		EFB2_02285	0.15	-0.3
2,420,082	-		EFB2_02285	0.15	+3.7
2,420,082	-		EFB2_02285	0.15	+3.9
2,420,082	-		EFB2_02285	0.15	+0.7
2,420,170	+		EFB2_02285	0.21	+2.2
2,420,170	+		EFB2_02285	0.21	+1.1
2,420,170	+		EFB2_02285	0.21	-0.2
2,420,170	+		EFB2_02285	0.21	+1.3
2,420,170	+		EFB2_02285	0.21	+0.1
2,420,170	+		EFB2_02285	0.21	+1.8
2,420,170	+		EFB2_02285	0.21	-1.3
2,420,170	+		EFB2_02285	0.21	-1.3
2,420,170	+		EFB2_02285	0.21	-2.2
2,420,170	+		EFB2_02285	0.21	+1.8
2,420,170	+		EFB2_02285	0.21	+0.0
2,420,171	-		EFB2_02285	0.21	+1.9
2,420,171	-		EFB2_02285	0.21	-1.6
2,420,171	-		EFB2_02285	0.21	-0.8
2,420,171	-		EFB2_02285	0.21	-1.6
2,420,171	-		EFB2_02285	0.21	+1.8
2,420,171	-		EFB2_02285	0.21	-1.2
2,420,171	-		EFB2_02285	0.21	+0.5
2,420,241	+		EFB2_02285	0.26	-1.2
2,420,253	+		EFB2_02285	0.27	-1.2
2,420,313	+		EFB2_02285	0.31	-1.2
2,420,314	-		EFB2_02285	0.31	-1.7
2,420,314	-		EFB2_02285	0.31	-2.2
2,420,317	+		EFB2_02285	0.31	+0.5
2,420,317	+		EFB2_02285	0.31	+1.1
2,420,317	+		EFB2_02285	0.31	+2.8
2,420,317	+		EFB2_02285	0.31	+1.0
2,420,317	+		EFB2_02285	0.31	-1.2
2,420,342	+		EFB2_02285	0.33	-1.2
2,420,423	+		EFB2_02285	0.38	-1.3
2,420,423	+		EFB2_02285	0.38	-1.4
2,420,457	+		EFB2_02285	0.41	-0.3
2,420,457	+		EFB2_02285	0.41	+3.3
2,420,457	+		EFB2_02285	0.41	-0.5
2,420,457	+		EFB2_02285	0.41	-0.3
2,420,458	-		EFB2_02285	0.41	-1.6
2,420,458	-		EFB2_02285	0.41	-1.3
2,420,480	+		EFB2_02285	0.42	-2.6
2,420,513	+		EFB2_02285	0.45	-0.8
2,420,513	+		EFB2_02285	0.45	+2.0
2,420,513	+		EFB2_02285	0.45	+0.1
2,420,513	+		EFB2_02285	0.45	+0.4
2,420,514	-		EFB2_02285	0.45	-1.9
2,420,514	-		EFB2_02285	0.45	+0.1
2,420,514	-		EFB2_02285	0.45	-0.8
2,420,545	+		EFB2_02285	0.47	+1.7
2,420,546	-		EFB2_02285	0.47	+0.7
2,420,546	-		EFB2_02285	0.47	+0.1
2,420,556	+		EFB2_02285	0.48	+2.5
2,420,556	+		EFB2_02285	0.48	-1.3
2,420,556	+		EFB2_02285	0.48	+0.1
2,420,640	-		EFB2_02285	0.54	-1.0
2,420,666	+		EFB2_02285	0.55	+3.0
2,420,667	-		EFB2_02285	0.55	+1.7
2,420,686	+		EFB2_02285	0.57	+1.8
2,420,686	+		EFB2_02285	0.57	-1.9
2,420,686	+		EFB2_02285	0.57	-1.5
2,420,686	+		EFB2_02285	0.57	+1.0
2,420,711	+		EFB2_02285	0.58	-1.9
2,420,751	+		EFB2_02285	0.61	-1.5