Strain Fitness in Escherichia fergusonii Becca around EFB2_02130

Experiment: phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2)
2,270,036	+				-2.3
2,270,037	-				+1.7
2,270,089	+				-0.6
2,270,089	+				-0.4
2,270,089	+				-2.3
2,270,089	+				-0.8
2,270,089	+				-1.1
2,270,091	+				+1.4
2,270,102	-				-0.8
2,270,102	-				-0.2
2,270,102	-				+1.2
2,270,102	-				-2.6
2,270,105	+				-0.6
2,270,107	+				+0.5
2,270,108	-				-2.0
2,270,108	-				+1.2
2,270,142	+				+1.3
2,270,142	+				+0.1
2,270,143	-				-1.4
2,270,147	-		EFB2_02128	0.11	+1.0
2,270,156	+		EFB2_02128	0.15	-0.0
2,270,156	+		EFB2_02128	0.15	+2.0
2,270,156	+		EFB2_02128	0.15	-1.8
2,270,157	-		EFB2_02128	0.16	-1.4
2,270,166	+		EFB2_02128	0.20	+0.5
2,270,166	+		EFB2_02128	0.20	+0.9
2,270,166	+		EFB2_02128	0.20	+0.7
2,270,166	+		EFB2_02128	0.20	+0.9
2,270,166	+		EFB2_02128	0.20	+1.3
2,270,166	+		EFB2_02128	0.20	-2.1
2,270,166	+		EFB2_02128	0.20	-1.7
2,270,166	+		EFB2_02128	0.20	-2.6
2,270,166	+		EFB2_02128	0.20	-0.2
2,270,167	-		EFB2_02128	0.21	+1.9
2,270,167	-		EFB2_02128	0.21	+0.8
2,270,167	-		EFB2_02128	0.21	-2.8
2,270,188	+		EFB2_02128	0.31	-0.0
2,270,188	+		EFB2_02128	0.31	+1.9
2,270,188	+		EFB2_02128	0.31	+2.2
2,270,188	+		EFB2_02128	0.31	+0.0
2,270,189	-		EFB2_02128	0.31	+1.0
2,270,189	-		EFB2_02128	0.31	-2.3
2,270,189	-		EFB2_02128	0.31	-0.6
2,270,189	-		EFB2_02128	0.31	-1.9
2,270,190	+		EFB2_02128	0.31	-0.8
2,270,190	+		EFB2_02128	0.31	-0.4
2,270,190	+		EFB2_02128	0.31	-0.5
2,270,191	-		EFB2_02128	0.32	+0.9
2,270,204	+		EFB2_02128	0.38	+0.3
2,270,204	+		EFB2_02128	0.38	+0.4
2,270,234	+		EFB2_02128	0.52	+0.8
2,270,234	+		EFB2_02128	0.52	-1.7
2,270,234	+		EFB2_02128	0.52	+0.6
2,270,235	-		EFB2_02128	0.53	-2.2
2,270,235	-		EFB2_02128	0.53	+1.6
2,270,235	-		EFB2_02128	0.53	+1.1
2,270,235	-		EFB2_02128	0.53	+1.0
2,270,235	-		EFB2_02128	0.53	-0.2
2,270,235	-		EFB2_02128	0.53	+0.4
2,270,235	-		EFB2_02128	0.53	-1.4
2,270,235	-		EFB2_02128	0.53	+2.3
2,270,235	-		EFB2_02128	0.53	-2.8
2,270,235	-		EFB2_02128	0.53	+0.8
2,270,239	+		EFB2_02128	0.54	-3.1
2,270,239	+		EFB2_02128	0.54	+1.7
2,270,240	-		EFB2_02128	0.55	-0.2
2,270,240	-		EFB2_02128	0.55	+2.2
2,270,274	+		EFB2_02128	0.71	-2.3
2,270,274	+		EFB2_02128	0.71	+0.2
2,270,274	+		EFB2_02128	0.71	-1.8
2,270,274	+		EFB2_02128	0.71	+0.6
2,270,275	-		EFB2_02128	0.71	+1.8
2,270,275	-		EFB2_02128	0.71	-0.2
2,270,296	+		EFB2_02128	0.81	+1.2
2,270,336	+				-1.5
2,270,337	-				+2.6
2,270,346	-				-0.0
2,270,346	-				+0.9
2,270,354	+				-0.6
2,270,355	-				+2.6
2,270,355	-				+1.6
2,270,356	+				+2.3
2,270,356	+				-0.6
2,270,356	+				+2.8
2,270,356	+				+1.5
2,270,356	+				+0.4
2,270,356	+				+0.4
2,270,356	+				-0.0
2,270,356	+				-2.2
2,270,356	+				+0.4
2,270,357	-				+0.6
2,270,357	-				-0.8
2,270,357	-				+1.5
2,270,359	+				+1.5
2,270,359	+				+1.1
2,270,359	+				+0.1
2,270,359	+				-1.2
2,270,359	+				-1.1
2,270,359	+				-0.2
2,270,359	+				+2.3
2,270,359	+				+1.6
2,270,359	+				+0.8
2,270,360	-				-0.0
2,270,360	-				-1.5
2,270,360	-				+0.5
2,270,360	-				+0.7
2,270,360	-				-0.2
2,270,360	-				+1.1
2,270,360	-				+3.0
2,270,360	-				-0.6
2,270,360	-				-0.0
2,270,360	-				-1.8
2,270,360	-				+0.1
2,270,360	-				-0.2
2,270,360	-				-2.5
2,270,360	-				+2.7
2,270,360	-				-3.1
2,270,360	-				+0.7
2,270,360	-				-0.0
2,270,360	-				+0.4
2,270,363	+				-0.6
2,270,363	+				+0.7
2,270,363	+				-0.2
2,270,363	+				-2.4
2,270,363	+				-0.3
2,270,364	-				-1.1
2,270,364	-				-1.0
2,270,384	+				+1.7
2,270,385	-				-0.4
2,270,403	+				+2.3
2,270,403	+				-0.4
2,270,403	+				+0.5
2,270,403	+				+0.1
2,270,403	+				+0.3
2,270,404	-				+0.2
2,270,404	-				+2.6
2,270,404	-				-0.9
2,270,404	-				-1.7
2,270,404	-				+0.6
2,270,404	-				+2.0
2,270,404	-				+0.9
2,270,415	+				-1.2
2,270,415	+				+0.2
2,270,415	+				+0.7
2,270,415	+				+0.3
2,270,415	+				-1.8
2,270,416	-				-0.4
2,270,416	-				-0.8
2,270,416	-				-0.8
2,270,417	+				+0.2
2,270,417	+				+1.8
2,270,417	+				-2.2
2,270,417	+				-0.3
2,270,417	+				+2.0
2,270,417	+				-0.5
2,270,417	+				-2.1
2,270,417	+				+1.9
2,270,417	+				+0.2
2,270,417	+				+0.9
2,270,417	+				-1.3
2,270,417	+				-1.7
2,270,417	+				-1.3
2,270,417	+				-2.0
2,270,417	+				-2.7
2,270,417	+				+0.2
2,270,417	+				+0.3
2,270,417	+				+2.3
2,270,417	+				-1.3
2,270,417	+				-3.2
2,270,417	+				+0.8
2,270,417	+				+1.0
2,270,418	-				+1.5
2,270,418	-				-0.1
2,270,418	-				-2.3
2,270,418	-				-2.1
2,270,418	-				+1.6
2,270,418	-				-3.5
2,270,418	-				+1.6
2,270,418	-				-2.1
2,270,418	-				-0.4
2,270,418	-				+1.3
2,270,418	-				-2.2
2,270,418	-				+1.9
2,270,418	-				+1.6
2,270,418	-				+1.1
2,270,418	-				+1.0
2,270,447	+				+1.3
2,270,447	+				-0.2
2,270,447	+				+0.8
2,270,447	+				+3.7
2,270,447	+				+0.9
2,270,448	-				-1.9
2,270,448	-				-1.5
2,270,448	-				+4.8
2,270,448	-				-0.9
2,270,448	-				+2.4
2,270,448	-				+0.1
2,270,448	-				+0.3
2,270,499	-		EFB2_02129	0.15	+3.9
2,270,539	+		EFB2_02129	0.22	+0.1
2,270,653	+		EFB2_02129	0.41	-2.6
2,270,653	+		EFB2_02129	0.41	-0.4
2,270,653	+		EFB2_02129	0.41	+0.7
2,270,654	-		EFB2_02129	0.41	-1.1
2,270,654	-		EFB2_02129	0.41	-0.9
2,270,654	-		EFB2_02129	0.41	-1.3
2,270,654	-		EFB2_02129	0.41	+0.8
2,270,669	+		EFB2_02129	0.44	+1.1
2,270,669	+		EFB2_02129	0.44	-2.5
2,270,682	+		EFB2_02129	0.46	+0.6
2,270,682	+		EFB2_02129	0.46	+0.8
2,270,682	+		EFB2_02129	0.46	-2.9
2,270,683	-		EFB2_02129	0.46	+1.3
2,270,683	-		EFB2_02129	0.46	-1.1
2,270,683	-		EFB2_02129	0.46	+0.9
2,270,683	-		EFB2_02129	0.46	-0.4
2,270,683	-		EFB2_02129	0.46	+4.1
2,270,713	+		EFB2_02129	0.51	-0.3
2,270,713	+		EFB2_02129	0.51	-0.6
2,270,714	-		EFB2_02129	0.51	+0.6
2,270,714	-		EFB2_02129	0.51	+0.2
2,270,714	-		EFB2_02129	0.51	+0.6
2,270,721	+		EFB2_02129	0.52	-3.0
2,270,721	+		EFB2_02129	0.52	+1.2
2,270,721	+		EFB2_02129	0.52	-1.8
2,270,721	+		EFB2_02129	0.52	+0.6
2,270,721	+		EFB2_02129	0.52	+2.3
2,270,721	+		EFB2_02129	0.52	+2.6
2,270,722	-		EFB2_02129	0.53	+1.7
2,270,759	+		EFB2_02129	0.59	+0.2
2,270,759	+		EFB2_02129	0.59	-2.5
2,270,759	+		EFB2_02129	0.59	-1.7
2,270,759	+		EFB2_02129	0.59	-0.9
2,270,759	+		EFB2_02129	0.59	-1.2
2,270,759	+		EFB2_02129	0.59	-2.7
2,270,760	-		EFB2_02129	0.59	-0.3
2,270,760	-		EFB2_02129	0.59	+2.5
2,270,760	-		EFB2_02129	0.59	+1.7
2,270,760	-		EFB2_02129	0.59	-0.2
2,270,820	+		EFB2_02129	0.69	+0.8
2,270,820	+		EFB2_02129	0.69	+0.9
2,270,820	+		EFB2_02129	0.69	+1.3
2,270,820	+		EFB2_02129	0.69	-1.0
2,270,820	+		EFB2_02129	0.69	-0.1
2,270,820	+		EFB2_02129	0.69	-1.4
2,270,820	+		EFB2_02129	0.69	+0.9
2,270,820	+		EFB2_02129	0.69	-2.3
2,270,820	+		EFB2_02129	0.69	+1.1
2,270,820	+		EFB2_02129	0.69	+2.1
2,270,820	+		EFB2_02129	0.69	+0.7
2,270,820	+		EFB2_02129	0.69	-2.4
2,270,820	+		EFB2_02129	0.69	+2.3
2,270,820	+		EFB2_02129	0.69	-2.4
2,270,820	+		EFB2_02129	0.69	-0.4
2,270,821	-		EFB2_02129	0.69	+1.1
2,270,821	-		EFB2_02129	0.69	+1.8
2,270,821	-		EFB2_02129	0.69	+1.6
2,270,821	-		EFB2_02129	0.69	-1.1
2,270,821	-		EFB2_02129	0.69	+0.9
2,270,821	-		EFB2_02129	0.69	+0.5
2,270,821	-		EFB2_02129	0.69	-0.0
2,270,825	-		EFB2_02129	0.70	+1.9
2,270,825	-		EFB2_02129	0.70	-0.8
2,270,874	+		EFB2_02129	0.78	-1.0
2,270,875	-		EFB2_02129	0.78	+0.6
2,270,902	+		EFB2_02129	0.82	-0.7
2,270,902	+		EFB2_02129	0.82	-0.7
2,270,902	+		EFB2_02129	0.82	-0.2
2,270,902	+		EFB2_02129	0.82	+0.9
2,270,902	+		EFB2_02129	0.82	-0.9
2,270,903	-		EFB2_02129	0.83	+1.4
2,270,904	+		EFB2_02129	0.83	+1.7
2,270,904	+		EFB2_02129	0.83	-0.1
2,270,904	+		EFB2_02129	0.83	-1.4
2,270,905	-		EFB2_02129	0.83	+1.7
2,270,947	-				+2.3
2,270,947	-				+1.2
2,271,004	+				+0.2
2,271,016	+				+1.0
2,271,017	-				+1.7
2,271,017	-				-0.6
2,271,017	-				+0.7
2,271,020	+				-2.9
2,271,020	+				-1.8
2,271,044	+		EFB2_02130	0.13	-1.8
2,271,044	+		EFB2_02130	0.13	-0.0
2,271,044	+		EFB2_02130	0.13	-1.6
2,271,044	+		EFB2_02130	0.13	+0.8
2,271,044	+		EFB2_02130	0.13	-2.0
2,271,045	-		EFB2_02130	0.13	-1.5
2,271,045	-		EFB2_02130	0.13	-0.3
2,271,045	-		EFB2_02130	0.13	-2.9
2,271,102	+		EFB2_02130	0.33	+0.2
2,271,102	+		EFB2_02130	0.33	+0.6
2,271,103	-		EFB2_02130	0.33	-0.0
2,271,146	+		EFB2_02130	0.48	+1.5
2,271,146	+		EFB2_02130	0.48	-2.3
2,271,147	-		EFB2_02130	0.48	+0.1
2,271,167	+		EFB2_02130	0.55	-0.2
2,271,167	+		EFB2_02130	0.55	-1.2
2,271,167	+		EFB2_02130	0.55	-0.3
2,271,167	+		EFB2_02130	0.55	+0.7
2,271,168	-		EFB2_02130	0.56	-0.2
2,271,168	-		EFB2_02130	0.56	-0.8
2,271,168	-		EFB2_02130	0.56	-1.1
2,271,168	-		EFB2_02130	0.56	-0.9
2,271,168	-		EFB2_02130	0.56	+4.0
2,271,168	-		EFB2_02130	0.56	-3.2
2,271,184	+		EFB2_02130	0.61	+1.8
2,271,184	+		EFB2_02130	0.61	+0.4
2,271,213	+		EFB2_02130	0.71	+0.8
2,271,213	+		EFB2_02130	0.71	+1.1
2,271,213	+		EFB2_02130	0.71	+1.0
2,271,213	+		EFB2_02130	0.71	+0.2
2,271,213	+		EFB2_02130	0.71	+0.9
2,271,214	-		EFB2_02130	0.71	+1.9
2,271,214	-		EFB2_02130	0.71	+0.2
2,271,288	+				-0.2
2,271,288	+				-1.9
2,271,288	+				-1.9
2,271,289	-				+0.4
2,271,289	-				+0.6
2,271,292	+				-1.1
2,271,293	-				-1.8
2,271,293	-				+1.0
2,271,299	+				+0.6
2,271,299	+				+3.6
2,271,310	+				+0.4
2,271,310	+				+6.2
2,271,311	-				-0.0
2,271,311	-				-0.2
2,271,398	+		EFB2_02131	0.19	+5.1
2,271,398	+		EFB2_02131	0.19	+0.0
2,271,398	+		EFB2_02131	0.19	-1.9
2,271,398	+		EFB2_02131	0.19	-1.8
2,271,398	+		EFB2_02131	0.19	+1.6
2,271,398	+		EFB2_02131	0.19	-1.5
2,271,398	+		EFB2_02131	0.19	+0.4
2,271,398	+		EFB2_02131	0.19	+0.2
2,271,399	-		EFB2_02131	0.19	+1.7
2,271,399	-		EFB2_02131	0.19	-2.5
2,271,399	-		EFB2_02131	0.19	-1.9
2,271,400	+		EFB2_02131	0.19	-1.9
2,271,401	-		EFB2_02131	0.19	+0.6
2,271,401	-		EFB2_02131	0.19	-1.7
2,271,424	+		EFB2_02131	0.24	+2.0
2,271,424	+		EFB2_02131	0.24	-1.4
2,271,424	+		EFB2_02131	0.24	-0.2
2,271,424	+		EFB2_02131	0.24	+0.7
2,271,424	+		EFB2_02131	0.24	+0.9
2,271,424	+		EFB2_02131	0.24	-1.1
2,271,425	-		EFB2_02131	0.24	-0.1
2,271,425	-		EFB2_02131	0.24	-1.5
2,271,425	-		EFB2_02131	0.24	+2.2
2,271,472	+		EFB2_02131	0.32	+1.1
2,271,473	-		EFB2_02131	0.32	+3.5
2,271,541	+		EFB2_02131	0.45	-1.5
2,271,542	-		EFB2_02131	0.45	-0.3
2,271,542	-		EFB2_02131	0.45	+1.6
2,271,542	-		EFB2_02131	0.45	-0.9
2,271,580	+		EFB2_02131	0.52	+1.9
2,271,580	+		EFB2_02131	0.52	-2.8
2,271,580	+		EFB2_02131	0.52	-0.8
2,271,580	+		EFB2_02131	0.52	-0.2
2,271,580	+		EFB2_02131	0.52	+2.0
2,271,580	+		EFB2_02131	0.52	+0.9
2,271,581	-		EFB2_02131	0.52	+0.6
2,271,581	-		EFB2_02131	0.52	-1.5
2,271,581	-		EFB2_02131	0.52	-0.9
2,271,581	-		EFB2_02131	0.52	-0.0
2,271,581	-		EFB2_02131	0.52	+1.2
2,271,581	-		EFB2_02131	0.52	-0.6
2,271,616	+		EFB2_02131	0.58	+1.0
2,271,616	+		EFB2_02131	0.58	+0.1
2,271,617	-		EFB2_02131	0.58	-1.7
2,271,617	-		EFB2_02131	0.58	+0.6
2,271,617	-		EFB2_02131	0.58	-0.9
2,271,652	+		EFB2_02131	0.65	-0.8
2,271,652	+		EFB2_02131	0.65	-0.6
2,271,653	-		EFB2_02131	0.65	-0.2
2,271,653	-		EFB2_02131	0.65	+1.3
2,271,653	-		EFB2_02131	0.65	-1.2
2,271,669	-		EFB2_02131	0.68	-1.6
2,271,759	+		EFB2_02131	0.84	-2.9
2,271,759	+		EFB2_02131	0.84	+1.3
2,271,759	+		EFB2_02131	0.84	+0.2
2,271,759	+		EFB2_02131	0.84	+1.0
2,271,760	-		EFB2_02131	0.84	+1.2
2,271,760	-		EFB2_02131	0.84	-0.8
2,271,760	-		EFB2_02131	0.84	+1.7
2,271,787	+		EFB2_02131	0.89	+0.2
2,271,787	+		EFB2_02131	0.89	-2.5
2,271,787	+		EFB2_02131	0.89	+2.6
2,271,788	-		EFB2_02131	0.89	+1.2
2,271,794	+				-0.2
2,271,794	+				+4.3
2,271,794	+				-2.3
2,271,795	-				+2.8
2,271,868	+				+0.2
2,271,869	-				+0.6
2,271,869	-				+0.0
2,271,869	-				+0.6
2,271,870	+				+0.2
2,271,870	+				-1.5
2,271,870	+				-0.6
2,271,870	+				-0.4
2,271,870	+				-2.4
2,271,870	+				-0.9
2,271,870	+				-0.3
2,271,870	+				-1.2
2,271,871	-				-0.3
2,271,871	-				-0.2
2,271,934	+				+0.2
2,271,934	+				-0.3
2,271,934	+				+0.2
2,271,934	+				-2.2
2,271,934	+				+1.1
2,271,934	+				+0.8
2,271,934	+				+1.2
2,271,935	-				+0.3
2,271,935	-				-2.0
2,271,935	-				+1.2
2,271,935	-				+0.2
2,271,935	-				+1.0
2,271,935	-				-1.1
2,271,956	+				+0.7
2,271,957	-				+1.3
2,271,964	+				-0.1
2,271,964	+				+0.5
2,271,965	-				-2.6
2,271,965	-				-2.3
2,271,985	+				+0.9
2,271,985	+				-0.4
2,271,985	+				+2.1
2,271,985	+				-3.0
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2,271,985	+				+1.7
2,271,986	-				+0.2
2,271,986	-				-1.6
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2,272,090	+				-0.3
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2,272,093	+				+0.0
2,272,093	+				-1.6
2,272,094	-				-0.4
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2,272,094	-				-1.5
2,272,094	-				-0.6
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2,272,094	-				-0.9
2,272,117	+				+0.0
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2,272,118	-				-0.3
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2,272,181	-		EFB2_02132	0.10	-2.8
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2,272,205	+		EFB2_02132	0.14	+0.6
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2,272,225	+		EFB2_02132	0.17	+2.2
2,272,225	+		EFB2_02132	0.17	+0.2
2,272,226	-		EFB2_02132	0.18	+0.7
2,272,254	+		EFB2_02132	0.22	+0.7
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2,272,254	+		EFB2_02132	0.22	-0.8
2,272,254	+		EFB2_02132	0.22	+1.4
2,272,254	+		EFB2_02132	0.22	-0.8
2,272,254	+		EFB2_02132	0.22	+1.2
2,272,255	-		EFB2_02132	0.22	-1.8
2,272,255	-		EFB2_02132	0.22	-2.2
2,272,255	-		EFB2_02132	0.22	-2.3
2,272,294	+		EFB2_02132	0.29	+2.4