Strain Fitness in Escherichia fergusonii Becca around EFB2_02071

Experiment: phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2)
2,223,833	+		EFB2_02070	0.68	-3.2
2,223,859	+		EFB2_02070	0.69	-2.6
2,223,859	+		EFB2_02070	0.69	+0.2
2,223,859	+		EFB2_02070	0.69	-1.8
2,223,859	+		EFB2_02070	0.69	-1.1
2,223,859	+		EFB2_02070	0.69	+3.1
2,223,859	+		EFB2_02070	0.69	+1.0
2,223,859	+		EFB2_02070	0.69	-0.1
2,223,859	+		EFB2_02070	0.69	-2.0
2,223,859	+		EFB2_02070	0.69	-1.6
2,223,859	+		EFB2_02070	0.69	+0.8
2,223,860	-		EFB2_02070	0.69	-0.1
2,223,860	-		EFB2_02070	0.69	+0.6
2,223,860	-		EFB2_02070	0.69	+1.4
2,223,860	-		EFB2_02070	0.69	-2.0
2,223,860	-		EFB2_02070	0.69	-0.1
2,223,860	-		EFB2_02070	0.69	-1.0
2,223,860	-		EFB2_02070	0.69	-0.9
2,223,860	-		EFB2_02070	0.69	+2.7
2,223,860	-		EFB2_02070	0.69	+0.7
2,223,860	-		EFB2_02070	0.69	+2.5
2,223,860	-		EFB2_02070	0.69	-2.1
2,223,861	+		EFB2_02070	0.69	-0.1
2,223,871	-		EFB2_02070	0.70	-1.0
2,223,871	-		EFB2_02070	0.70	+0.5
2,223,901	+		EFB2_02070	0.71	+0.3
2,223,942	+		EFB2_02070	0.72	-1.1
2,223,943	-		EFB2_02070	0.72	-1.0
2,223,943	-		EFB2_02070	0.72	+2.5
2,223,943	-		EFB2_02070	0.72	+2.2
2,223,954	+		EFB2_02070	0.73	-0.4
2,223,955	-		EFB2_02070	0.73	-0.3
2,223,975	+		EFB2_02070	0.74	-2.2
2,223,975	+		EFB2_02070	0.74	-1.6
2,223,976	-		EFB2_02070	0.74	-0.1
2,223,976	-		EFB2_02070	0.74	+0.7
2,224,015	+		EFB2_02070	0.75	-2.2
2,224,015	+		EFB2_02070	0.75	-1.5
2,224,015	+		EFB2_02070	0.75	+1.5
2,224,016	-		EFB2_02070	0.75	-2.0
2,224,016	-		EFB2_02070	0.75	+1.2
2,224,016	-		EFB2_02070	0.75	-2.1
2,224,065	+		EFB2_02070	0.77	-2.9
2,224,066	-		EFB2_02070	0.78	+2.1
2,224,090	+		EFB2_02070	0.79	+1.8
2,224,090	+		EFB2_02070	0.79	-1.1
2,224,090	+		EFB2_02070	0.79	-1.0
2,224,119	+		EFB2_02070	0.80	-0.1
2,224,119	+		EFB2_02070	0.80	-0.5
2,224,119	+		EFB2_02070	0.80	+0.2
2,224,119	+		EFB2_02070	0.80	+0.1
2,224,119	+		EFB2_02070	0.80	+0.5
2,224,120	-		EFB2_02070	0.80	+3.7
2,224,120	-		EFB2_02070	0.80	+0.3
2,224,120	-		EFB2_02070	0.80	-0.3
2,224,120	-		EFB2_02070	0.80	+0.1
2,224,223	+		EFB2_02070	0.84	-0.3
2,224,236	+		EFB2_02070	0.85	+0.4
2,224,236	+		EFB2_02070	0.85	-2.8
2,224,236	+		EFB2_02070	0.85	+0.4
2,224,236	+		EFB2_02070	0.85	-1.7
2,224,237	-		EFB2_02070	0.85	-1.6
2,224,237	-		EFB2_02070	0.85	-2.0
2,224,237	-		EFB2_02070	0.85	+3.7
2,224,237	-		EFB2_02070	0.85	+0.1
2,224,237	-		EFB2_02070	0.85	+0.5
2,224,237	-		EFB2_02070	0.85	+1.4
2,224,240	+		EFB2_02070	0.85	-0.4
2,224,240	+		EFB2_02070	0.85	+1.6
2,224,240	+		EFB2_02070	0.85	+1.4
2,224,240	+		EFB2_02070	0.85	+1.1
2,224,240	+		EFB2_02070	0.85	+2.5
2,224,240	+		EFB2_02070	0.85	+0.5
2,224,240	+		EFB2_02070	0.85	+2.7
2,224,241	-		EFB2_02070	0.85	+0.4
2,224,241	-		EFB2_02070	0.85	+0.9
2,224,241	-		EFB2_02070	0.85	+1.0
2,224,250	+		EFB2_02070	0.85	+1.0
2,224,250	+		EFB2_02070	0.85	-1.7
2,224,250	+		EFB2_02070	0.85	+0.3
2,224,250	+		EFB2_02070	0.85	+0.5
2,224,250	+		EFB2_02070	0.85	-0.8
2,224,251	-		EFB2_02070	0.85	+1.5
2,224,290	+		EFB2_02070	0.87	-1.4
2,224,290	+		EFB2_02070	0.87	+0.2
2,224,290	+		EFB2_02070	0.87	-1.3
2,224,291	-		EFB2_02070	0.87	+1.6
2,224,291	-		EFB2_02070	0.87	-1.0
2,224,291	-		EFB2_02070	0.87	-1.8
2,224,291	-		EFB2_02070	0.87	-2.4
2,224,412	+				-0.7
2,224,412	+				+1.3
2,224,412	+				+0.3
2,224,412	+				-2.2
2,224,412	+				-0.0
2,224,413	-				+2.7
2,224,413	-				-0.3
2,224,418	+				-2.4
2,224,418	+				-0.2
2,224,418	+				-1.0
2,224,418	+				-1.4
2,224,418	+				+1.3
2,224,418	+				-0.0
2,224,418	+				-2.8
2,224,418	+				-2.0
2,224,418	+				+0.8
2,224,418	+				-0.5
2,224,418	+				-1.2
2,224,418	+				-1.5
2,224,418	+				+0.9
2,224,418	+				-0.7
2,224,418	+				+2.3
2,224,418	+				-1.4
2,224,418	+				+0.8
2,224,419	-				+0.6
2,224,419	-				+1.4
2,224,419	-				+0.9
2,224,419	-				+1.6
2,224,419	-				+2.5
2,224,419	-				-1.2
2,224,419	-				+0.9
2,224,419	-				-0.1
2,224,419	-				+1.5
2,224,419	-				+0.7
2,224,419	-				-1.0
2,224,419	-				-1.4
2,224,419	-				-0.7
2,224,419	-				+0.9
2,224,458	+				-0.1
2,224,458	+				-0.8
2,224,468	-				-1.6
2,224,491	+				+1.7
2,224,543	+				+1.0
2,224,543	+				+0.3
2,224,543	+				-1.9
2,224,543	+				+1.0
2,224,543	+				-1.5
2,224,543	+				+1.0
2,224,543	+				+0.5
2,224,543	+				+1.1
2,224,543	+				-0.7
2,224,543	+				+3.2
2,224,543	+				-0.6
2,224,543	+				+0.9
2,224,543	+				+1.1
2,224,543	+				+0.6
2,224,543	+				+0.2
2,224,544	-				-2.4
2,224,544	-				-0.5
2,224,544	-				-0.1
2,224,544	-				-2.8
2,224,544	-				+3.0
2,224,544	-				-2.4
2,224,544	-				+3.2
2,224,544	-				+0.6
2,224,544	-				-1.1
2,224,544	-				-2.4
2,224,544	-				+1.3
2,224,544	-				+1.5
2,224,555	+				-1.4
2,224,555	+				-2.4
2,224,555	+				+2.7
2,224,557	+				-0.5
2,224,609	+				-1.7
2,224,609	+				+4.4
2,224,609	+				-0.1
2,224,609	+				-1.4
2,224,609	+				-1.7
2,224,609	+				-0.5
2,224,609	+				+2.0
2,224,609	+				-0.5
2,224,610	-				-2.0
2,224,610	-				+0.0
2,224,610	-				+0.3
2,224,610	-				-1.4
2,224,610	-				+1.9
2,224,610	-				+0.9
2,224,646	+				-0.2
2,224,674	+				-0.7
2,224,675	-				-1.6
2,224,693	+				-1.1
2,224,705	+				+0.9
2,224,706	-				+0.3
2,224,706	-				+0.1
2,224,706	-				-0.7
2,224,706	-				+0.4
2,224,728	+				-0.4
2,224,766	+				+2.5
2,224,777	+				+0.3
2,224,778	-				+1.0
2,224,916	+		EFB2_02071	0.14	+2.7
2,224,917	-		EFB2_02071	0.15	-1.1
2,224,917	-		EFB2_02071	0.15	+0.8
2,224,999	+		EFB2_02071	0.23	-1.8
2,224,999	+		EFB2_02071	0.23	+1.5
2,225,006	+		EFB2_02071	0.24	-0.5
2,225,006	+		EFB2_02071	0.24	-1.1
2,225,007	-		EFB2_02071	0.24	+0.7
2,225,007	-		EFB2_02071	0.24	+0.2
2,225,007	-		EFB2_02071	0.24	-1.4
2,225,113	-		EFB2_02071	0.35	-1.6
2,225,113	-		EFB2_02071	0.35	+0.3
2,225,150	-		EFB2_02071	0.38	-1.5
2,225,175	-		EFB2_02071	0.41	+0.7
2,225,207	+		EFB2_02071	0.44	+1.7
2,225,207	+		EFB2_02071	0.44	+1.0
2,225,207	+		EFB2_02071	0.44	-2.0
2,225,208	-		EFB2_02071	0.44	+2.5
2,225,208	-		EFB2_02071	0.44	-1.2
2,225,211	+		EFB2_02071	0.45	+3.0
2,225,212	-		EFB2_02071	0.45	-4.4
2,225,212	-		EFB2_02071	0.45	+0.5
2,225,212	-		EFB2_02071	0.45	-0.8
2,225,212	-		EFB2_02071	0.45	+1.5
2,225,218	-		EFB2_02071	0.45	-0.8
2,225,218	-		EFB2_02071	0.45	-0.6
2,225,252	+		EFB2_02071	0.49	+1.5
2,225,253	-		EFB2_02071	0.49	+1.6
2,225,253	-		EFB2_02071	0.49	+1.0
2,225,281	-		EFB2_02071	0.52	+0.5
2,225,281	-		EFB2_02071	0.52	+0.5
2,225,281	-		EFB2_02071	0.52	-0.1
2,225,281	-		EFB2_02071	0.52	-1.6
2,225,281	-		EFB2_02071	0.52	+2.5
2,225,385	+		EFB2_02071	0.63	-2.2
2,225,405	+		EFB2_02071	0.65	-0.1
2,225,458	+		EFB2_02071	0.70	+0.5
2,225,458	+		EFB2_02071	0.70	+1.2
2,225,458	+		EFB2_02071	0.70	+0.9
2,225,458	+		EFB2_02071	0.70	-1.1
2,225,458	+		EFB2_02071	0.70	-1.3
2,225,458	+		EFB2_02071	0.70	+0.6
2,225,458	+		EFB2_02071	0.70	+1.1
2,225,459	-		EFB2_02071	0.70	-2.0
2,225,459	-		EFB2_02071	0.70	-0.3
2,225,459	-		EFB2_02071	0.70	-2.2
2,225,459	-		EFB2_02071	0.70	-1.4
2,225,459	-		EFB2_02071	0.70	+1.1
2,225,459	-		EFB2_02071	0.70	+0.6
2,225,519	+		EFB2_02071	0.76	-1.4
2,225,519	+		EFB2_02071	0.76	+0.2
2,225,519	+		EFB2_02071	0.76	-1.4
2,225,520	-		EFB2_02071	0.77	-0.7
2,225,520	-		EFB2_02071	0.77	+0.8
2,225,564	+		EFB2_02071	0.81	+0.1
2,225,564	+		EFB2_02071	0.81	+1.3
2,225,564	+		EFB2_02071	0.81	-0.1
2,225,565	-		EFB2_02071	0.81	-1.3
2,225,565	-		EFB2_02071	0.81	+0.5
2,225,565	-		EFB2_02071	0.81	-1.8
2,225,571	+		EFB2_02071	0.82	+0.6
2,225,571	+		EFB2_02071	0.82	+0.2
2,225,572	-		EFB2_02071	0.82	-0.3
2,225,572	-		EFB2_02071	0.82	+1.5
2,225,584	+		EFB2_02071	0.83	-0.8
2,225,585	-		EFB2_02071	0.83	+0.0
2,225,585	-		EFB2_02071	0.83	+0.7
2,225,630	+		EFB2_02071	0.88	+1.0
2,225,631	-		EFB2_02071	0.88	-1.0
2,225,663	+				+2.3
2,225,663	+				+0.6
2,225,664	-				-1.0
2,225,664	-				+0.2
2,225,664	-				+0.5
2,225,725	+				+0.8
2,225,726	-				+0.7
2,225,766	-				+0.3
2,225,766	-				-1.3
2,225,766	-				-2.5
2,225,788	+				+0.2
2,225,789	-				+2.2
2,225,789	-				-1.3
2,225,812	+				+0.2
2,225,813	-				+0.7
2,225,830	+		EFB2_02072	0.12	+0.9
2,225,830	+		EFB2_02072	0.12	+1.7
2,225,831	-		EFB2_02072	0.12	+1.8
2,225,920	-		EFB2_02072	0.24	+0.9
2,225,935	+		EFB2_02072	0.26	-1.8
2,226,136	+		EFB2_02072	0.53	-1.0
2,226,136	+		EFB2_02072	0.53	+1.3
2,226,137	-		EFB2_02072	0.53	+0.8
2,226,137	-		EFB2_02072	0.53	-1.0
2,226,156	-		EFB2_02072	0.55	-1.5
2,226,172	+		EFB2_02072	0.58	+0.9
2,226,172	+		EFB2_02072	0.58	-0.1
2,226,172	+		EFB2_02072	0.58	+1.5
2,226,172	+		EFB2_02072	0.58	+2.9
2,226,172	+		EFB2_02072	0.58	-2.4
2,226,173	-		EFB2_02072	0.58	-0.5
2,226,173	-		EFB2_02072	0.58	+1.8
2,226,174	+		EFB2_02072	0.58	+1.6
2,226,175	-		EFB2_02072	0.58	+0.5
2,226,175	-		EFB2_02072	0.58	-0.4
2,226,175	-		EFB2_02072	0.58	-0.1
2,226,184	+		EFB2_02072	0.59	+4.7
2,226,185	-		EFB2_02072	0.59	-0.0
2,226,185	-		EFB2_02072	0.59	+1.2
2,226,232	+		EFB2_02072	0.66	-0.0
2,226,232	+		EFB2_02072	0.66	+2.0
2,226,244	+		EFB2_02072	0.67	-1.9
2,226,244	+		EFB2_02072	0.67	-1.0
2,226,244	+		EFB2_02072	0.67	+0.3
2,226,244	+		EFB2_02072	0.67	+2.1
2,226,244	+		EFB2_02072	0.67	+0.9
2,226,244	+		EFB2_02072	0.67	-0.7
2,226,244	+		EFB2_02072	0.67	+2.3
2,226,244	+		EFB2_02072	0.67	+1.1
2,226,245	-		EFB2_02072	0.67	-2.1
2,226,245	-		EFB2_02072	0.67	+2.9
2,226,245	-		EFB2_02072	0.67	+1.8
2,226,245	-		EFB2_02072	0.67	+0.8
2,226,245	-		EFB2_02072	0.67	+1.3
2,226,245	-		EFB2_02072	0.67	+1.0
2,226,341	+		EFB2_02072	0.80	-2.1
2,226,346	+		EFB2_02072	0.81	+2.0
2,226,346	+		EFB2_02072	0.81	-0.3
2,226,346	+		EFB2_02072	0.81	-2.1
2,226,346	+		EFB2_02072	0.81	+2.8
2,226,346	+		EFB2_02072	0.81	-1.6
2,226,346	+		EFB2_02072	0.81	-0.8
2,226,346	+		EFB2_02072	0.81	+2.1
2,226,346	+		EFB2_02072	0.81	-2.9
2,226,346	+		EFB2_02072	0.81	+0.0
2,226,347	-		EFB2_02072	0.81	+1.3
2,226,347	-		EFB2_02072	0.81	-0.5
2,226,347	-		EFB2_02072	0.81	+1.8
2,226,347	-		EFB2_02072	0.81	-1.7
2,226,347	-		EFB2_02072	0.81	-1.0
2,226,347	-		EFB2_02072	0.81	-0.1
2,226,347	-		EFB2_02072	0.81	-0.7
2,226,347	-		EFB2_02072	0.81	+2.5
2,226,347	-		EFB2_02072	0.81	-1.0
2,226,347	-		EFB2_02072	0.81	-0.1
2,226,347	-		EFB2_02072	0.81	+1.0
2,226,347	-		EFB2_02072	0.81	-0.5
2,226,347	-		EFB2_02072	0.81	+1.1
2,226,347	-		EFB2_02072	0.81	-1.7
2,226,347	-		EFB2_02072	0.81	-0.8
2,226,347	-		EFB2_02072	0.81	-0.4
2,226,361	+		EFB2_02072	0.83	-1.1
2,226,361	+		EFB2_02072	0.83	-2.0
2,226,361	+		EFB2_02072	0.83	-0.3
2,226,361	+		EFB2_02072	0.83	-1.9
2,226,361	+		EFB2_02072	0.83	+1.1
2,226,361	+		EFB2_02072	0.83	-0.2
2,226,362	-		EFB2_02072	0.83	-0.0
2,226,362	-		EFB2_02072	0.83	+0.9
2,226,362	-		EFB2_02072	0.83	+0.9
2,226,362	-		EFB2_02072	0.83	-0.7
2,226,362	-		EFB2_02072	0.83	-0.2
2,226,362	-		EFB2_02072	0.83	+1.1
2,226,364	+		EFB2_02072	0.83	+1.9
2,226,372	+		EFB2_02072	0.84	-1.5
2,226,417	-				-1.3
2,226,417	-				-0.8
2,226,487	+				+2.2
2,226,487	+				-0.5
2,226,487	+				+3.5
2,226,487	+				-0.2
2,226,487	+				+0.2
2,226,487	+				-2.8
2,226,487	+				-0.5
2,226,487	+				-1.1
2,226,487	+				-0.3
2,226,488	-				+1.5
2,226,488	-				-0.3
2,226,488	-				+0.9
2,226,488	-				-1.4
2,226,488	-				+0.2
2,226,488	-				+0.8
2,226,488	-				+1.4
2,226,519	+				+0.8
2,226,519	+				+1.9
2,226,520	-				-2.0
2,226,520	-				-0.4
2,226,560	+				-2.5
2,226,560	+				+0.9
2,226,560	+				-0.8
2,226,560	+				+0.7
2,226,561	-				-1.5
2,226,561	-				+1.9
2,226,561	-				-0.4
2,226,561	-				-0.2
2,226,561	-				+0.8
2,226,561	-				+1.5
2,226,561	-				+0.9
2,226,561	-				-0.7
2,226,561	-				-1.4
2,226,561	-				+0.0
2,226,561	-				-1.4
2,226,561	-				-1.6
2,226,561	-				+1.1
2,226,561	-				+0.2
2,226,562	+				+1.8
2,226,562	+				+3.0
2,226,562	+				+3.2
2,226,562	+				-2.7
2,226,562	+				-2.3
2,226,562	+				+1.5
2,226,562	+				-1.9
2,226,562	+				+1.1
2,226,562	+				-0.3
2,226,562	+				-0.1
2,226,562	+				-0.3
2,226,562	+				-2.5
2,226,562	+				+0.5
2,226,562	+				+0.7
2,226,562	+				-2.1
2,226,562	+				-0.5
2,226,562	+				+0.6
2,226,562	+				-2.2
2,226,563	-				-1.2
2,226,563	-				-1.1
2,226,563	-				+2.3
2,226,563	-				-0.8
2,226,563	-				-1.3
2,226,563	-				+0.6
2,226,563	-				-2.4
2,226,563	-				+1.6
2,226,563	-				+0.9
2,226,563	-				-3.0
2,226,563	-				-1.2
2,226,563	-				+0.3
2,226,655	+		EFB2_02073	0.32	+1.9
2,226,655	+		EFB2_02073	0.32	-0.3
2,226,656	-		EFB2_02073	0.32	-2.5
2,226,658	+		EFB2_02073	0.33	-0.9
2,226,658	+		EFB2_02073	0.33	+1.5
2,226,659	-		EFB2_02073	0.33	-1.6
2,226,659	-		EFB2_02073	0.33	-0.5
2,226,698	+		EFB2_02073	0.43	-0.8
2,226,698	+		EFB2_02073	0.43	-1.4
2,226,698	+		EFB2_02073	0.43	+1.2
2,226,698	+		EFB2_02073	0.43	-1.2
2,226,698	+		EFB2_02073	0.43	-1.4
2,226,698	+		EFB2_02073	0.43	-0.5
2,226,698	+		EFB2_02073	0.43	+0.2
2,226,698	+		EFB2_02073	0.43	+2.1
2,226,699	-		EFB2_02073	0.43	+2.5
2,226,699	-		EFB2_02073	0.43	-0.8
2,226,699	-		EFB2_02073	0.43	-0.3
2,226,699	-		EFB2_02073	0.43	+0.2
2,226,699	-		EFB2_02073	0.43	+0.0