Strain Fitness in Escherichia fergusonii Becca around EFB2_01738

Experiment: phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2)
1,835,070	+		EFB2_01737	0.53	-0.7
1,835,070	+		EFB2_01737	0.53	+0.2
1,835,070	+		EFB2_01737	0.53	+0.1
1,835,070	+		EFB2_01737	0.53	-0.9
1,835,070	+		EFB2_01737	0.53	+1.0
1,835,070	+		EFB2_01737	0.53	+2.5
1,835,071	-		EFB2_01737	0.53	-0.0
1,835,071	-		EFB2_01737	0.53	-2.2
1,835,071	-		EFB2_01737	0.53	+2.0
1,835,071	-		EFB2_01737	0.53	+2.1
1,835,071	-		EFB2_01737	0.53	-1.5
1,835,071	-		EFB2_01737	0.53	+0.1
1,835,074	+		EFB2_01737	0.53	-2.0
1,835,074	+		EFB2_01737	0.53	-0.4
1,835,075	-		EFB2_01737	0.53	+3.7
1,835,075	-		EFB2_01737	0.53	+1.2
1,835,075	-		EFB2_01737	0.53	+1.4
1,835,075	-		EFB2_01737	0.53	-3.5
1,835,075	-		EFB2_01737	0.53	+0.6
1,835,075	-		EFB2_01737	0.53	-0.3
1,835,075	-		EFB2_01737	0.53	+0.1
1,835,075	-		EFB2_01737	0.53	-0.8
1,835,075	-		EFB2_01737	0.53	-2.6
1,835,089	+		EFB2_01737	0.55	+0.8
1,835,089	+		EFB2_01737	0.55	+0.7
1,835,089	+		EFB2_01737	0.55	-1.1
1,835,090	-		EFB2_01737	0.55	+0.0
1,835,090	-		EFB2_01737	0.55	-0.4
1,835,090	-		EFB2_01737	0.55	+0.7
1,835,104	-		EFB2_01737	0.56	-1.0
1,835,104	-		EFB2_01737	0.56	-0.3
1,835,110	+		EFB2_01737	0.56	+1.4
1,835,110	+		EFB2_01737	0.56	-1.7
1,835,110	+		EFB2_01737	0.56	-2.5
1,835,111	-		EFB2_01737	0.57	-2.1
1,835,153	+		EFB2_01737	0.60	+0.7
1,835,154	-		EFB2_01737	0.61	+0.3
1,835,200	-		EFB2_01737	0.65	+1.1
1,835,210	+		EFB2_01737	0.66	+0.7
1,835,210	+		EFB2_01737	0.66	+1.7
1,835,211	-		EFB2_01737	0.66	-1.7
1,835,211	-		EFB2_01737	0.66	+2.0
1,835,211	-		EFB2_01737	0.66	-0.9
1,835,222	+		EFB2_01737	0.67	+1.0
1,835,222	+		EFB2_01737	0.67	-1.4
1,835,222	+		EFB2_01737	0.67	-0.1
1,835,222	+		EFB2_01737	0.67	+2.8
1,835,222	+		EFB2_01737	0.67	-0.4
1,835,222	+		EFB2_01737	0.67	-0.3
1,835,223	-		EFB2_01737	0.67	-0.7
1,835,223	-		EFB2_01737	0.67	-3.1
1,835,223	-		EFB2_01737	0.67	+0.4
1,835,241	+		EFB2_01737	0.69	+1.9
1,835,241	+		EFB2_01737	0.69	-1.8
1,835,242	-		EFB2_01737	0.69	+1.8
1,835,242	-		EFB2_01737	0.69	-1.9
1,835,242	-		EFB2_01737	0.69	-2.7
1,835,244	+		EFB2_01737	0.69	-2.0
1,835,244	+		EFB2_01737	0.69	-1.3
1,835,244	+		EFB2_01737	0.69	+0.6
1,835,244	+		EFB2_01737	0.69	-1.4
1,835,244	+		EFB2_01737	0.69	-0.3
1,835,244	+		EFB2_01737	0.69	+0.8
1,835,244	+		EFB2_01737	0.69	-1.9
1,835,244	+		EFB2_01737	0.69	-0.4
1,835,245	-		EFB2_01737	0.69	-2.3
1,835,245	-		EFB2_01737	0.69	-1.1
1,835,245	-		EFB2_01737	0.69	+0.5
1,835,245	-		EFB2_01737	0.69	+0.6
1,835,245	-		EFB2_01737	0.69	-1.0
1,835,245	-		EFB2_01737	0.69	-0.5
1,835,245	-		EFB2_01737	0.69	+2.7
1,835,287	-		EFB2_01737	0.73	-0.2
1,835,287	-		EFB2_01737	0.73	+0.3
1,835,299	+		EFB2_01737	0.74	+0.5
1,835,299	+		EFB2_01737	0.74	-0.3
1,835,374	+		EFB2_01737	0.81	+1.5
1,835,374	+		EFB2_01737	0.81	-0.5
1,835,375	-		EFB2_01737	0.81	+0.7
1,835,379	+		EFB2_01737	0.81	+0.1
1,835,379	+		EFB2_01737	0.81	-2.9
1,835,379	+		EFB2_01737	0.81	+1.3
1,835,379	+		EFB2_01737	0.81	-1.8
1,835,379	+		EFB2_01737	0.81	-1.0
1,835,379	+		EFB2_01737	0.81	-3.0
1,835,379	+		EFB2_01737	0.81	-2.5
1,835,379	+		EFB2_01737	0.81	-2.0
1,835,379	+		EFB2_01737	0.81	+1.8
1,835,379	+		EFB2_01737	0.81	+0.4
1,835,379	+		EFB2_01737	0.81	+0.5
1,835,379	+		EFB2_01737	0.81	+1.9
1,835,379	+		EFB2_01737	0.81	+1.1
1,835,379	+		EFB2_01737	0.81	-1.6
1,835,379	+		EFB2_01737	0.81	-2.5
1,835,379	+		EFB2_01737	0.81	-1.9
1,835,379	+		EFB2_01737	0.81	+0.6
1,835,379	+		EFB2_01737	0.81	+1.3
1,835,379	+		EFB2_01737	0.81	+0.9
1,835,379	+		EFB2_01737	0.81	+1.9
1,835,379	+		EFB2_01737	0.81	+0.2
1,835,379	+		EFB2_01737	0.81	+0.4
1,835,379	+		EFB2_01737	0.81	+2.0
1,835,379	+		EFB2_01737	0.81	+0.0
1,835,379	+		EFB2_01737	0.81	+1.8
1,835,379	+		EFB2_01737	0.81	+1.9
1,835,379	+		EFB2_01737	0.81	+1.8
1,835,379	+		EFB2_01737	0.81	-2.1
1,835,379	+		EFB2_01737	0.81	-0.5
1,835,379	+		EFB2_01737	0.81	-3.0
1,835,380	-		EFB2_01737	0.81	-0.1
1,835,380	-		EFB2_01737	0.81	-0.7
1,835,380	-		EFB2_01737	0.81	+0.1
1,835,380	-		EFB2_01737	0.81	+0.3
1,835,380	-		EFB2_01737	0.81	-2.1
1,835,380	-		EFB2_01737	0.81	+0.4
1,835,380	-		EFB2_01737	0.81	+1.0
1,835,380	-		EFB2_01737	0.81	+1.1
1,835,380	-		EFB2_01737	0.81	-1.1
1,835,380	-		EFB2_01737	0.81	+0.1
1,835,380	-		EFB2_01737	0.81	+0.1
1,835,380	-		EFB2_01737	0.81	-0.5
1,835,380	-		EFB2_01737	0.81	-0.0
1,835,380	-		EFB2_01737	0.81	-0.1
1,835,380	-		EFB2_01737	0.81	+0.2
1,835,380	-		EFB2_01737	0.81	+0.2
1,835,380	-		EFB2_01737	0.81	-2.7
1,835,380	-		EFB2_01737	0.81	+0.4
1,835,380	-		EFB2_01737	0.81	+0.1
1,835,380	-		EFB2_01737	0.81	-0.7
1,835,380	-		EFB2_01737	0.81	-2.5
1,835,380	-		EFB2_01737	0.81	-0.2
1,835,380	-		EFB2_01737	0.81	-0.3
1,835,380	-		EFB2_01737	0.81	-1.5
1,835,380	-		EFB2_01737	0.81	+0.4
1,835,380	-		EFB2_01737	0.81	-1.6
1,835,380	-		EFB2_01737	0.81	-2.4
1,835,380	-		EFB2_01737	0.81	-0.2
1,835,380	-		EFB2_01737	0.81	+1.3
1,835,380	-		EFB2_01737	0.81	+1.5
1,835,380	-		EFB2_01737	0.81	-0.7
1,835,380	-		EFB2_01737	0.81	-0.5
1,835,380	-		EFB2_01737	0.81	-2.4
1,835,400	+		EFB2_01737	0.83	+0.2
1,835,400	+		EFB2_01737	0.83	+0.7
1,835,400	+		EFB2_01737	0.83	-0.1
1,835,401	-		EFB2_01737	0.83	+1.4
1,835,401	-		EFB2_01737	0.83	-0.7
1,835,401	-		EFB2_01737	0.83	-0.7
1,835,445	+		EFB2_01737	0.87	-0.0
1,835,446	-		EFB2_01737	0.87	-0.0
1,835,446	-		EFB2_01737	0.87	+0.6
1,835,470	+		EFB2_01737	0.90	-2.2
1,835,470	+		EFB2_01737	0.90	-0.3
1,835,470	+		EFB2_01737	0.90	+0.2
1,835,471	-		EFB2_01737	0.90	+0.9
1,835,534	+				-2.2
1,835,536	+				-0.0
1,835,537	-				-0.5
1,835,583	+				-0.7
1,835,583	+				-1.2
1,835,583	+				+1.1
1,835,584	-				+0.5
1,835,585	+				-2.3
1,835,585	+				+0.7
1,835,585	+				+0.3
1,835,585	+				-0.0
1,835,585	+				+0.2
1,835,586	-				-2.5
1,835,586	-				+1.2
1,835,586	-				-0.2
1,835,602	+				+1.1
1,835,603	-				+0.1
1,835,603	-				+0.3
1,835,603	-				+2.1
1,835,634	+				-0.3
1,835,635	-				+1.3
1,835,650	+				-0.6
1,835,650	+				+2.4
1,835,755	+				-2.4
1,835,756	-				+0.5
1,835,785	-				+1.0
1,835,795	-				-0.7
1,835,812	+				-1.9
1,835,812	+				+0.5
1,835,812	+				-3.0
1,835,813	-				+0.2
1,835,813	-				-0.5
1,835,817	+				+1.4
1,835,818	-				-0.9
1,835,828	-				-0.0
1,835,828	-				+0.3
1,835,829	+				-1.2
1,835,829	+				-1.3
1,835,905	+				+0.1
1,835,906	-				+0.4
1,835,906	-				+0.9
1,835,906	-				+1.9
1,835,906	-				-2.8
1,835,906	-				-1.7
1,835,906	-				-0.3
1,835,943	+				-0.9
1,835,943	+				+0.7
1,835,943	+				-2.0
1,835,943	+				+1.9
1,835,943	+				+1.9
1,835,943	+				+1.0
1,835,943	+				-1.8
1,835,943	+				+0.3
1,835,944	-				-2.1
1,835,944	-				+1.1
1,835,944	-				-0.9
1,835,944	-				-1.0
1,835,944	-				+1.1
1,835,947	+				-2.2
1,835,947	+				-1.3
1,835,947	+				-0.3
1,835,947	+				-0.1
1,835,947	+				-2.5
1,835,947	+				-0.1
1,835,947	+				+0.4
1,835,947	+				-0.5
1,835,947	+				+0.6
1,835,947	+				+1.5
1,835,947	+				-1.3
1,835,947	+				+0.8
1,835,947	+				-1.0
1,835,947	+				-2.6
1,835,948	-				+1.2
1,835,948	-				+0.8
1,835,948	-				+0.3
1,835,948	-				+1.7
1,835,948	-				-0.8
1,835,948	-				-1.3
1,835,948	-				-0.4
1,835,948	-				+1.2
1,835,970	+				-1.0
1,835,970	+				+0.3
1,835,970	+				-1.3
1,835,970	+				+0.9
1,835,970	+				+0.1
1,835,971	-				-0.0
1,835,971	-				-0.2
1,835,971	-				-1.1
1,835,971	-				+0.1
1,835,971	-				-0.5
1,835,971	-				-2.1
1,835,971	-				-1.5
1,835,976	+				+0.7
1,835,976	+				-2.3
1,835,976	+				-2.9
1,835,976	+				+0.1
1,835,977	-				+0.9
1,835,977	-				-0.4
1,835,999	+				+1.2
1,835,999	+				+0.1
1,835,999	+				-0.1
1,835,999	+				+1.3
1,836,002	+				-0.0
1,836,002	+				+1.2
1,836,003	-				-0.5
1,836,003	-				+1.2
1,836,003	-				+0.8
1,836,003	-				+0.3
1,836,003	-				+2.0
1,836,003	-				-0.6
1,836,003	-				+1.4
1,836,037	-		EFB2_01738	0.26	-0.7
1,836,063	+		EFB2_01738	0.54	-0.8
1,836,063	+		EFB2_01738	0.54	-0.1
1,836,063	+		EFB2_01738	0.54	+0.2
1,836,063	+		EFB2_01738	0.54	-2.1
1,836,064	-		EFB2_01738	0.56	+1.1
1,836,066	+		EFB2_01738	0.58	-2.5
1,836,066	+		EFB2_01738	0.58	-1.6
1,836,066	+		EFB2_01738	0.58	+0.9
1,836,067	-		EFB2_01738	0.59	-2.8
1,836,067	-		EFB2_01738	0.59	+0.6
1,836,078	+		EFB2_01738	0.71	-0.2
1,836,079	-		EFB2_01738	0.72	+2.1
1,836,101	+				+1.7
1,836,149	+				+0.1
1,836,149	+				-2.0
1,836,149	+				-0.2
1,836,149	+				-3.2
1,836,152	+				-0.4
1,836,160	+				+1.0
1,836,160	+				-1.6
1,836,160	+				-2.8
1,836,160	+				+0.5
1,836,161	-				-0.3
1,836,161	-				+1.0
1,836,161	-				+0.6
1,836,169	+				-1.9
1,836,169	+				+1.7
1,836,169	+				+2.3
1,836,170	-				+0.5
1,836,170	-				-0.3
1,836,202	-				-2.7
1,836,241	+				+1.5
1,836,247	+				+0.1
1,836,247	+				+0.4
1,836,248	-				+0.3
1,836,248	-				+0.7
1,836,248	-				+5.1
1,836,248	-				-2.2
1,836,295	+				-1.7
1,836,295	+				-1.4
1,836,295	+				-0.5
1,836,295	+				-1.7
1,836,296	-				+2.1
1,836,296	-				+1.3
1,836,296	-				+2.5
1,836,296	-				+1.2
1,836,301	-				+0.7
1,836,350	+				-0.7
1,836,350	+				-1.5
1,836,359	+				-1.0
1,836,362	-				-2.6
1,836,362	-				+1.6
1,836,364	+				+1.3
1,836,364	+				-0.1
1,836,365	-				+1.2
1,836,418	-				+1.3
1,836,458	+				-2.2
1,836,471	+				+0.9
1,836,473	+				-1.9
1,836,473	+				-1.4
1,836,473	+				-0.1
1,836,474	-				-1.2
1,836,475	+				-1.9
1,836,476	-				+1.1
1,836,476	-				+1.7
1,836,476	-				+0.6
1,836,492	+				+1.9
1,836,492	+				+0.3
1,836,493	-				+0.9
1,836,493	-				-1.0
1,836,539	+		EFB2_01739	0.24	-0.9
1,836,578	+		EFB2_01739	0.45	+1.0
1,836,578	+		EFB2_01739	0.45	+0.2
1,836,578	+		EFB2_01739	0.45	+0.1
1,836,578	+		EFB2_01739	0.45	+1.7
1,836,592	+		EFB2_01739	0.53	+3.1
1,836,593	-		EFB2_01739	0.53	-0.6
1,836,629	+		EFB2_01739	0.73	+1.1
1,836,643	-		EFB2_01739	0.80	-0.9
1,836,648	+		EFB2_01739	0.83	-1.7
1,836,648	+		EFB2_01739	0.83	+1.5
1,836,648	+		EFB2_01739	0.83	-0.2
1,836,649	-		EFB2_01739	0.83	+1.1
1,836,649	-		EFB2_01739	0.83	-0.3
1,836,652	+		EFB2_01739	0.85	-1.5
1,836,652	+		EFB2_01739	0.85	+0.3
1,836,653	-		EFB2_01739	0.85	+3.6
1,836,695	+				-0.5
1,836,695	+				+0.8
1,836,695	+				-0.2
1,836,695	+				+0.3
1,836,695	+				-0.1
1,836,695	+				-1.3
1,836,696	-				+1.3
1,836,696	-				+0.2
1,836,696	-				+0.1
1,836,708	+				-0.8
1,836,709	-				-1.9
1,836,768	-				-1.0
1,836,768	-				+0.3
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