Strain Fitness in Escherichia fergusonii Becca around EFB2_01097

Experiment: phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2)
1,147,568	+		EFB2_01095	0.57	+0.5
1,147,569	-		EFB2_01095	0.57	+0.9
1,147,571	+		EFB2_01095	0.57	-2.2
1,147,571	+		EFB2_01095	0.57	+0.9
1,147,571	+		EFB2_01095	0.57	+0.2
1,147,572	-		EFB2_01095	0.57	-0.4
1,147,572	-		EFB2_01095	0.57	+0.8
1,147,572	-		EFB2_01095	0.57	-1.2
1,147,629	+		EFB2_01095	0.64	+0.7
1,147,629	+		EFB2_01095	0.64	+0.1
1,147,630	-		EFB2_01095	0.64	+0.3
1,147,652	+		EFB2_01095	0.66	+0.3
1,147,652	+		EFB2_01095	0.66	+1.0
1,147,653	-		EFB2_01095	0.66	-0.3
1,147,653	-		EFB2_01095	0.66	-2.2
1,147,653	-		EFB2_01095	0.66	-0.3
1,147,685	-		EFB2_01095	0.70	+1.5
1,147,687	+		EFB2_01095	0.70	-1.0
1,147,687	+		EFB2_01095	0.70	-2.3
1,147,687	+		EFB2_01095	0.70	-0.7
1,147,687	+		EFB2_01095	0.70	-3.0
1,147,687	+		EFB2_01095	0.70	-2.7
1,147,687	+		EFB2_01095	0.70	-0.3
1,147,688	-		EFB2_01095	0.70	+1.6
1,147,688	-		EFB2_01095	0.70	+1.7
1,147,688	-		EFB2_01095	0.70	-1.6
1,147,688	-		EFB2_01095	0.70	+0.9
1,147,688	-		EFB2_01095	0.70	+0.7
1,147,688	-		EFB2_01095	0.70	-1.5
1,147,978	+		EFB2_01096	0.11	-2.1
1,147,984	+		EFB2_01096	0.12	-0.3
1,147,984	+		EFB2_01096	0.12	-0.9
1,147,984	+		EFB2_01096	0.12	-0.7
1,147,984	+		EFB2_01096	0.12	+1.1
1,147,985	+		EFB2_01096	0.12	-1.6
1,147,985	-		EFB2_01096	0.12	-0.4
1,147,985	-		EFB2_01096	0.12	-0.6
1,147,985	-		EFB2_01096	0.12	-0.4
1,147,985	-		EFB2_01096	0.12	-0.7
1,148,086	+		EFB2_01096	0.27	+0.3
1,148,086	+		EFB2_01096	0.27	+0.4
1,148,086	+		EFB2_01096	0.27	-1.5
1,148,086	+		EFB2_01096	0.27	-0.4
1,148,086	+		EFB2_01096	0.27	-0.8
1,148,087	-		EFB2_01096	0.28	+0.2
1,148,138	+		EFB2_01096	0.36	-1.3
1,148,138	+		EFB2_01096	0.36	-1.4
1,148,138	+		EFB2_01096	0.36	+0.6
1,148,138	-		EFB2_01096	0.36	-0.7
1,148,139	-		EFB2_01096	0.36	-0.6
1,148,139	-		EFB2_01096	0.36	-1.8
1,148,139	-		EFB2_01096	0.36	-0.5
1,148,139	-		EFB2_01096	0.36	+1.9
1,148,139	-		EFB2_01096	0.36	-0.4
1,148,139	-		EFB2_01096	0.36	+1.2
1,148,139	-		EFB2_01096	0.36	-1.1
1,148,139	-		EFB2_01096	0.36	+0.5
1,148,155	+		EFB2_01096	0.38	+0.8
1,148,155	+		EFB2_01096	0.38	-0.2
1,148,155	+		EFB2_01096	0.38	+0.3
1,148,155	+		EFB2_01096	0.38	-3.3
1,148,155	+		EFB2_01096	0.38	+0.1
1,148,155	+		EFB2_01096	0.38	-1.5
1,148,155	+		EFB2_01096	0.38	-0.9
1,148,155	+		EFB2_01096	0.38	-1.9
1,148,155	+		EFB2_01096	0.38	-0.5
1,148,155	+		EFB2_01096	0.38	+0.3
1,148,155	+		EFB2_01096	0.38	-2.5
1,148,155	+		EFB2_01096	0.38	-0.3
1,148,156	-		EFB2_01096	0.38	-0.5
1,148,156	-		EFB2_01096	0.38	+0.3
1,148,156	-		EFB2_01096	0.38	+0.5
1,148,156	-		EFB2_01096	0.38	-2.2
1,148,156	-		EFB2_01096	0.38	-3.4
1,148,156	-		EFB2_01096	0.38	+0.1
1,148,156	-		EFB2_01096	0.38	-1.2
1,148,156	-		EFB2_01096	0.38	+0.9
1,148,157	+		EFB2_01096	0.38	-0.2
1,148,157	+		EFB2_01096	0.38	-0.3
1,148,157	+		EFB2_01096	0.38	-1.4
1,148,157	+		EFB2_01096	0.38	-0.1
1,148,158	-		EFB2_01096	0.39	+0.2
1,148,158	-		EFB2_01096	0.39	+0.9
1,148,158	-		EFB2_01096	0.39	-0.6
1,148,158	-		EFB2_01096	0.39	+0.7
1,148,158	-		EFB2_01096	0.39	+0.7
1,148,158	-		EFB2_01096	0.39	+0.2
1,148,158	-		EFB2_01096	0.39	+0.9
1,148,158	-		EFB2_01096	0.39	-1.5
1,148,158	-		EFB2_01096	0.39	-0.6
1,148,250	+		EFB2_01096	0.53	-0.0
1,148,250	+		EFB2_01096	0.53	+0.1
1,148,250	+		EFB2_01096	0.53	-0.1
1,148,250	+		EFB2_01096	0.53	-1.1
1,148,251	-		EFB2_01096	0.53	-1.0
1,148,251	-		EFB2_01096	0.53	-0.3
1,148,251	-		EFB2_01096	0.53	-0.4
1,148,251	-		EFB2_01096	0.53	+1.3
1,148,251	-		EFB2_01096	0.53	-2.2
1,148,251	-		EFB2_01096	0.53	-1.2
1,148,251	-		EFB2_01096	0.53	-2.1
1,148,251	-		EFB2_01096	0.53	-2.2
1,148,251	-		EFB2_01096	0.53	+0.5
1,148,251	-		EFB2_01096	0.53	+0.7
1,148,251	-		EFB2_01096	0.53	+1.3
1,148,337	+		EFB2_01096	0.67	-1.8
1,148,337	+		EFB2_01096	0.67	+0.2
1,148,480	-		EFB2_01096	0.89	-0.9
1,148,504	+				+1.2
1,148,505	-				-0.4
1,148,600	+				+1.9
1,148,600	+				-1.4
1,148,601	-				-1.5
1,148,618	+				-4.1
1,148,618	+				+0.5
1,148,618	+				+0.6
1,148,618	+				-0.5
1,148,619	-				-3.6
1,148,619	-				-0.2
1,148,619	-				-1.4
1,148,642	+		EFB2_01097	0.12	+0.5
1,148,642	+		EFB2_01097	0.12	-0.1
1,148,642	+		EFB2_01097	0.12	+1.3
1,148,642	+		EFB2_01097	0.12	-0.0
1,148,657	+		EFB2_01097	0.14	+0.7
1,148,658	-		EFB2_01097	0.14	+0.3
1,148,658	-		EFB2_01097	0.14	-0.7
1,148,776	+		EFB2_01097	0.32	+0.0
1,148,776	+		EFB2_01097	0.32	-2.2
1,148,776	+		EFB2_01097	0.32	-1.8
1,148,776	+		EFB2_01097	0.32	+0.2
1,148,777	-		EFB2_01097	0.32	-0.5
1,148,777	-		EFB2_01097	0.32	-2.3
1,148,777	-		EFB2_01097	0.32	+2.3
1,148,777	-		EFB2_01097	0.32	+1.4
1,148,777	-		EFB2_01097	0.32	+0.3
1,148,777	-		EFB2_01097	0.32	-2.4
1,148,885	+		EFB2_01097	0.48	-1.7
1,148,885	+		EFB2_01097	0.48	+0.5
1,148,886	-		EFB2_01097	0.48	+0.4
1,148,886	-		EFB2_01097	0.48	-2.9
1,148,886	-		EFB2_01097	0.48	-0.2
1,148,886	-		EFB2_01097	0.48	+1.5
1,148,907	+		EFB2_01097	0.52	-0.6
1,148,907	+		EFB2_01097	0.52	+0.5
1,148,907	+		EFB2_01097	0.52	+0.2
1,148,908	-		EFB2_01097	0.52	-1.3
1,148,908	-		EFB2_01097	0.52	-2.2
1,148,908	-		EFB2_01097	0.52	-2.5
1,148,908	-		EFB2_01097	0.52	+0.4
1,148,995	+		EFB2_01097	0.65	-0.6
1,149,036	+		EFB2_01097	0.71	-2.1
1,149,036	+		EFB2_01097	0.71	+0.4
1,149,036	+		EFB2_01097	0.71	+1.2
1,149,036	+		EFB2_01097	0.71	+2.7
1,149,037	-		EFB2_01097	0.71	+0.7
1,149,037	-		EFB2_01097	0.71	-0.2
1,149,037	-		EFB2_01097	0.71	-2.5
1,149,041	+		EFB2_01097	0.72	+0.7
1,149,041	+		EFB2_01097	0.72	+0.6
1,149,041	+		EFB2_01097	0.72	-0.1
1,149,041	+		EFB2_01097	0.72	+0.4
1,149,041	+		EFB2_01097	0.72	-0.3
1,149,041	+		EFB2_01097	0.72	+1.0
1,149,041	+		EFB2_01097	0.72	+0.5
1,149,041	+		EFB2_01097	0.72	+0.7
1,149,041	+		EFB2_01097	0.72	+0.8
1,149,041	+		EFB2_01097	0.72	+1.0
1,149,041	+		EFB2_01097	0.72	+0.5
1,149,041	+		EFB2_01097	0.72	-1.1
1,149,041	+		EFB2_01097	0.72	-0.9
1,149,041	+		EFB2_01097	0.72	-1.3
1,149,042	-		EFB2_01097	0.72	-0.2
1,149,042	-		EFB2_01097	0.72	-0.8
1,149,042	-		EFB2_01097	0.72	-0.1
1,149,042	-		EFB2_01097	0.72	-0.8
1,149,042	-		EFB2_01097	0.72	+1.2
1,149,042	-		EFB2_01097	0.72	-0.9
1,149,042	-		EFB2_01097	0.72	+0.7
1,149,042	-		EFB2_01097	0.72	-1.3
1,149,042	-		EFB2_01097	0.72	+0.7
1,149,123	+		EFB2_01097	0.84	-2.1
1,149,124	-		EFB2_01097	0.84	-1.1
1,149,206	-				+0.2
1,149,211	+				+0.8
1,149,211	+				+0.9
1,149,284	+				+1.4
1,149,284	+				-1.4
1,149,284	+				-0.1
1,149,318	+				+0.7
1,149,350	+				+1.2
1,149,350	+				+0.6
1,149,351	-				-1.2
1,149,351	-				-1.8
1,149,351	-				+0.7
1,149,433	-		EFB2_01098	0.15	-0.8
1,149,478	+		EFB2_01098	0.19	+1.8
1,149,490	+		EFB2_01098	0.20	+2.1
1,149,490	+		EFB2_01098	0.20	-1.3
1,149,491	-		EFB2_01098	0.20	-1.7
1,149,491	-		EFB2_01098	0.20	+1.1
1,149,527	+		EFB2_01098	0.22	+0.3
1,149,527	+		EFB2_01098	0.22	+0.9
1,149,527	+		EFB2_01098	0.22	+0.6
1,149,528	-		EFB2_01098	0.23	-0.7
1,149,528	-		EFB2_01098	0.23	+2.1
1,149,698	+		EFB2_01098	0.35	-1.8
1,149,698	+		EFB2_01098	0.35	-0.2
1,149,698	+		EFB2_01098	0.35	+0.2
1,149,698	+		EFB2_01098	0.35	+0.1
1,149,698	+		EFB2_01098	0.35	-0.7
1,149,699	-		EFB2_01098	0.35	-1.1
1,149,699	-		EFB2_01098	0.35	-0.1
1,149,699	-		EFB2_01098	0.35	-1.1
1,149,699	-		EFB2_01098	0.35	-0.5
1,149,699	-		EFB2_01098	0.35	-0.5
1,149,699	-		EFB2_01098	0.35	+0.3
1,149,721	-		EFB2_01098	0.37	-0.6
1,149,721	-		EFB2_01098	0.37	-0.0
1,149,721	-		EFB2_01098	0.37	+0.6
1,149,891	+		EFB2_01098	0.50	-1.5
1,149,891	+		EFB2_01098	0.50	-0.5
1,149,891	+		EFB2_01098	0.50	-0.6
1,149,892	-		EFB2_01098	0.50	-1.0
1,149,892	-		EFB2_01098	0.50	-0.8
1,149,943	+		EFB2_01098	0.54	-0.3
1,149,944	-		EFB2_01098	0.54	-2.1
1,149,973	+		EFB2_01098	0.56	-1.7
1,149,973	+		EFB2_01098	0.56	+1.0
1,149,973	+		EFB2_01098	0.56	-2.6
1,149,974	-		EFB2_01098	0.56	-2.7
1,150,014	+		EFB2_01098	0.59	-1.3
1,150,014	+		EFB2_01098	0.59	-0.9
1,150,014	+		EFB2_01098	0.59	-2.8
1,150,014	+		EFB2_01098	0.59	+0.2
1,150,015	-		EFB2_01098	0.59	-0.8
1,150,015	-		EFB2_01098	0.59	+0.4
1,150,015	-		EFB2_01098	0.59	-2.4
1,150,015	-		EFB2_01098	0.59	-1.3
1,150,016	+		EFB2_01098	0.59	+1.0
1,150,016	+		EFB2_01098	0.59	-2.2
1,150,016	+		EFB2_01098	0.59	+0.9
1,150,016	+		EFB2_01098	0.59	-0.9
1,150,016	+		EFB2_01098	0.59	-0.2
1,150,016	+		EFB2_01098	0.59	-0.1
1,150,016	+		EFB2_01098	0.59	-1.2
1,150,016	+		EFB2_01098	0.59	+0.0
1,150,016	+		EFB2_01098	0.59	+2.0
1,150,016	+		EFB2_01098	0.59	+1.7
1,150,016	+		EFB2_01098	0.59	+0.9
1,150,016	+		EFB2_01098	0.59	+0.9
1,150,016	+		EFB2_01098	0.59	-1.8
1,150,016	+		EFB2_01098	0.59	-2.8
1,150,016	+		EFB2_01098	0.59	-2.1
1,150,016	+		EFB2_01098	0.59	+0.4
1,150,016	+		EFB2_01098	0.59	+0.8
1,150,016	+		EFB2_01098	0.59	+0.2
1,150,016	+		EFB2_01098	0.59	+0.3
1,150,016	+		EFB2_01098	0.59	+1.3
1,150,016	+		EFB2_01098	0.59	-1.0
1,150,016	+		EFB2_01098	0.59	+0.1
1,150,016	+		EFB2_01098	0.59	-2.3
1,150,016	+		EFB2_01098	0.59	+0.2
1,150,016	+		EFB2_01098	0.59	-1.2
1,150,016	+		EFB2_01098	0.59	-1.4
1,150,016	+		EFB2_01098	0.59	-2.8
1,150,016	+		EFB2_01098	0.59	+0.6
1,150,016	+		EFB2_01098	0.59	+1.1
1,150,016	+		EFB2_01098	0.59	-0.4
1,150,016	+		EFB2_01098	0.59	-0.9
1,150,016	+		EFB2_01098	0.59	-1.6
1,150,016	+		EFB2_01098	0.59	-0.1
1,150,016	+		EFB2_01098	0.59	-1.5
1,150,016	+		EFB2_01098	0.59	+0.2
1,150,016	+		EFB2_01098	0.59	-1.9
1,150,016	+		EFB2_01098	0.59	+0.2
1,150,016	+		EFB2_01098	0.59	-3.0
1,150,017	-		EFB2_01098	0.59	-0.4
1,150,017	-		EFB2_01098	0.59	+2.0
1,150,017	-		EFB2_01098	0.59	+0.4
1,150,017	-		EFB2_01098	0.59	-1.3
1,150,017	-		EFB2_01098	0.59	-0.8
1,150,017	-		EFB2_01098	0.59	+0.3
1,150,017	-		EFB2_01098	0.59	-0.7
1,150,017	-		EFB2_01098	0.59	-2.2
1,150,017	-		EFB2_01098	0.59	+0.2
1,150,017	-		EFB2_01098	0.59	+3.2
1,150,017	-		EFB2_01098	0.59	-1.4
1,150,017	-		EFB2_01098	0.59	-1.3
1,150,017	-		EFB2_01098	0.59	+0.0
1,150,017	-		EFB2_01098	0.59	+2.6
1,150,017	-		EFB2_01098	0.59	-2.4
1,150,017	-		EFB2_01098	0.59	-0.4
1,150,017	-		EFB2_01098	0.59	-0.5
1,150,017	-		EFB2_01098	0.59	+1.6
1,150,017	-		EFB2_01098	0.59	+0.9
1,150,017	-		EFB2_01098	0.59	-3.2
1,150,017	-		EFB2_01098	0.59	-1.5
1,150,017	-		EFB2_01098	0.59	+0.4
1,150,017	-		EFB2_01098	0.59	-0.8
1,150,017	-		EFB2_01098	0.59	-2.4
1,150,017	-		EFB2_01098	0.59	+1.8
1,150,017	-		EFB2_01098	0.59	-3.1
1,150,017	-		EFB2_01098	0.59	-1.0
1,150,017	-		EFB2_01098	0.59	-2.6
1,150,017	-		EFB2_01098	0.59	+0.7
1,150,017	-		EFB2_01098	0.59	+1.3
1,150,017	-		EFB2_01098	0.59	-1.0
1,150,017	-		EFB2_01098	0.59	+1.1
1,150,017	-		EFB2_01098	0.59	-1.3
1,150,017	-		EFB2_01098	0.59	+1.5
1,150,017	-		EFB2_01098	0.59	-1.4
1,150,017	-		EFB2_01098	0.59	+1.5
1,150,017	-		EFB2_01098	0.59	-2.9
1,150,017	-		EFB2_01098	0.59	-2.5
1,150,082	+		EFB2_01098	0.64	-2.5
1,150,082	+		EFB2_01098	0.64	-0.5
1,150,082	+		EFB2_01098	0.64	+0.6
1,150,082	+		EFB2_01098	0.64	-0.7
1,150,082	+		EFB2_01098	0.64	-2.6
1,150,082	+		EFB2_01098	0.64	+0.2
1,150,082	+		EFB2_01098	0.64	+1.4
1,150,082	+		EFB2_01098	0.64	+0.5
1,150,082	+		EFB2_01098	0.64	+1.3
1,150,082	+		EFB2_01098	0.64	-0.4
1,150,082	+		EFB2_01098	0.64	+0.9
1,150,082	+		EFB2_01098	0.64	-2.2
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1,150,083	-		EFB2_01098	0.64	-0.9
1,150,083	-		EFB2_01098	0.64	+0.8
1,150,083	-		EFB2_01098	0.64	-0.7
1,150,083	-		EFB2_01098	0.64	-0.5
1,150,083	-		EFB2_01098	0.64	-2.1
1,150,083	-		EFB2_01098	0.64	-0.7
1,150,096	-		EFB2_01098	0.65	+0.4
1,150,096	-		EFB2_01098	0.65	-0.6
1,150,140	+		EFB2_01098	0.68	-0.5
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1,150,140	+		EFB2_01098	0.68	+1.3
1,150,140	+		EFB2_01098	0.68	-1.7
1,150,140	+		EFB2_01098	0.68	+2.1
1,150,140	+		EFB2_01098	0.68	+0.1
1,150,140	+		EFB2_01098	0.68	-0.1
1,150,140	+		EFB2_01098	0.68	+0.0
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1,150,160	+		EFB2_01098	0.70	-1.2
1,150,160	+		EFB2_01098	0.70	+1.5
1,150,160	+		EFB2_01098	0.70	+0.1
1,150,160	+		EFB2_01098	0.70	+1.0
1,150,160	+		EFB2_01098	0.70	-2.2
1,150,161	-		EFB2_01098	0.70	+0.4
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1,150,161	-		EFB2_01098	0.70	-2.4
1,150,161	-		EFB2_01098	0.70	+0.2
1,150,161	-		EFB2_01098	0.70	-0.7
1,150,161	-		EFB2_01098	0.70	+1.0
1,150,161	-		EFB2_01098	0.70	+0.8
1,150,161	-		EFB2_01098	0.70	+0.7
1,150,161	-		EFB2_01098	0.70	+2.0
1,150,161	-		EFB2_01098	0.70	+1.4
1,150,164	+		EFB2_01098	0.70	-1.5
1,150,164	+		EFB2_01098	0.70	-1.4
1,150,164	+		EFB2_01098	0.70	-0.7
1,150,164	+		EFB2_01098	0.70	+1.7
1,150,165	-		EFB2_01098	0.70	+0.8
1,150,165	-		EFB2_01098	0.70	-0.3
1,150,165	-		EFB2_01098	0.70	-0.0
1,150,165	-		EFB2_01098	0.70	-0.5
1,150,165	-		EFB2_01098	0.70	+0.3