Experiment: Xyloglucan from tamarind 2.5 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_05154 and BACOVA_05155 are separated by 130 nucleotides BACOVA_05155 and BACOVA_05156 are separated by 122 nucleotides BACOVA_05156 and BACOVA_05157 are separated by 632 nucleotides
BACOVA_05154: BACOVA_05154 - hypothetical protein, at 636,044 to 636,517
_05154
BACOVA_05155: BACOVA_05155 - hypothetical protein, at 636,648 to 636,818
_05155
BACOVA_05156: BACOVA_05156 - hypothetical protein, at 636,941 to 637,069
_05156
BACOVA_05157: BACOVA_05157 - hypothetical protein, at 637,702 to 638,526
_05157
Position (kb) 636
637
638 Strain fitness (log2 ratio) -2
-1
0
1 at 635.982 kb on - strand at 636.012 kb on + strand at 636.039 kb on + strand at 636.045 kb on + strand at 636.070 kb on + strand at 636.103 kb on + strand, within BACOVA_05154 at 636.103 kb on + strand, within BACOVA_05154 at 636.106 kb on - strand, within BACOVA_05154 at 636.209 kb on - strand, within BACOVA_05154 at 636.236 kb on + strand, within BACOVA_05154 at 636.237 kb on - strand, within BACOVA_05154 at 636.353 kb on + strand, within BACOVA_05154 at 636.353 kb on + strand, within BACOVA_05154 at 636.354 kb on - strand, within BACOVA_05154 at 636.471 kb on - strand at 636.492 kb on - strand at 636.500 kb on - strand at 636.517 kb on + strand at 636.520 kb on + strand at 636.521 kb on - strand at 636.522 kb on + strand at 636.527 kb on - strand at 636.527 kb on - strand at 636.558 kb on - strand at 636.616 kb on + strand at 636.617 kb on - strand at 636.648 kb on - strand at 636.722 kb on + strand, within BACOVA_05155 at 636.723 kb on - strand, within BACOVA_05155 at 636.723 kb on - strand, within BACOVA_05155 at 636.761 kb on - strand, within BACOVA_05155 at 636.761 kb on - strand, within BACOVA_05155 at 636.784 kb on - strand, within BACOVA_05155 at 636.786 kb on - strand, within BACOVA_05155 at 636.806 kb on + strand at 636.807 kb on - strand at 636.810 kb on - strand at 636.810 kb on - strand at 636.810 kb on - strand at 636.812 kb on - strand at 636.812 kb on - strand at 636.813 kb on + strand at 636.813 kb on + strand at 636.814 kb on - strand at 636.814 kb on - strand at 636.814 kb on - strand at 636.814 kb on - strand at 636.816 kb on + strand at 636.816 kb on + strand at 636.817 kb on - strand at 636.817 kb on - strand at 636.817 kb on - strand at 636.817 kb on - strand at 636.820 kb on - strand at 636.825 kb on - strand at 636.825 kb on - strand at 636.825 kb on - strand at 636.827 kb on - strand at 636.827 kb on - strand at 636.827 kb on - strand at 636.830 kb on - strand at 636.867 kb on - strand at 636.867 kb on - strand at 636.871 kb on + strand at 636.871 kb on + strand at 636.894 kb on + strand at 636.901 kb on - strand at 636.901 kb on - strand at 636.979 kb on + strand, within BACOVA_05156 at 636.980 kb on - strand, within BACOVA_05156 at 637.053 kb on + strand, within BACOVA_05156 at 637.064 kb on + strand at 637.085 kb on - strand at 637.094 kb on - strand at 637.096 kb on - strand at 637.096 kb on - strand at 637.096 kb on - strand at 637.191 kb on - strand at 637.191 kb on - strand at 637.222 kb on - strand at 637.397 kb on - strand at 637.397 kb on - strand at 637.399 kb on - strand at 637.461 kb on + strand at 637.582 kb on + strand at 637.585 kb on + strand at 637.586 kb on - strand at 637.592 kb on + strand at 637.605 kb on + strand at 637.612 kb on - strand at 637.638 kb on + strand at 637.639 kb on - strand at 637.639 kb on - strand at 637.668 kb on + strand at 637.698 kb on - strand at 637.698 kb on - strand at 637.817 kb on + strand, within BACOVA_05157 at 637.818 kb on - strand, within BACOVA_05157 at 637.885 kb on + strand, within BACOVA_05157 at 637.890 kb on + strand, within BACOVA_05157 at 637.890 kb on + strand, within BACOVA_05157 at 637.890 kb on + strand, within BACOVA_05157 at 637.890 kb on + strand, within BACOVA_05157 at 637.891 kb on - strand, within BACOVA_05157 at 637.891 kb on - strand, within BACOVA_05157 at 637.892 kb on + strand, within BACOVA_05157 at 637.892 kb on + strand, within BACOVA_05157 at 637.892 kb on + strand, within BACOVA_05157 at 637.893 kb on - strand, within BACOVA_05157 at 637.893 kb on - strand, within BACOVA_05157 at 637.895 kb on - strand, within BACOVA_05157 at 637.895 kb on - strand, within BACOVA_05157 at 637.895 kb on - strand, within BACOVA_05157 at 637.908 kb on + strand, within BACOVA_05157 at 637.921 kb on - strand, within BACOVA_05157 at 637.921 kb on - strand, within BACOVA_05157 at 637.954 kb on + strand, within BACOVA_05157 at 637.979 kb on - strand, within BACOVA_05157 at 637.987 kb on - strand, within BACOVA_05157 at 637.994 kb on + strand, within BACOVA_05157 at 638.033 kb on + strand, within BACOVA_05157 at 638.033 kb on + strand, within BACOVA_05157 at 638.034 kb on - strand, within BACOVA_05157
Per-strain Table
Position Strand Gene LocusTag Fraction Xyloglucan from tamarind 2.5 mg/mL (C) remove 635,982 - -0.5 636,012 + +0.4 636,039 + -0.1 636,045 + -0.3 636,070 + -0.3 636,103 + BACOVA_05154 0.12 +0.3 636,103 + BACOVA_05154 0.12 -1.6 636,106 - BACOVA_05154 0.13 +0.3 636,209 - BACOVA_05154 0.35 +0.5 636,236 + BACOVA_05154 0.41 -0.8 636,237 - BACOVA_05154 0.41 +0.4 636,353 + BACOVA_05154 0.65 -1.8 636,353 + BACOVA_05154 0.65 -0.4 636,354 - BACOVA_05154 0.65 +0.1 636,471 - -0.7 636,492 - +0.0 636,500 - -0.9 636,517 + -0.4 636,520 + +0.2 636,521 - +0.3 636,522 + +0.1 636,527 - -0.7 636,527 - -0.1 636,558 - -1.4 636,616 + -0.5 636,617 - +1.2 636,648 - -0.3 636,722 + BACOVA_05155 0.43 -0.4 636,723 - BACOVA_05155 0.44 -1.1 636,723 - BACOVA_05155 0.44 +0.5 636,761 - BACOVA_05155 0.66 +0.4 636,761 - BACOVA_05155 0.66 +0.7 636,784 - BACOVA_05155 0.80 -1.3 636,786 - BACOVA_05155 0.81 +0.3 636,806 + -0.9 636,807 - +0.4 636,810 - -0.4 636,810 - +0.3 636,810 - -1.5 636,812 - -0.1 636,812 - -0.4 636,813 + -0.5 636,813 + -0.0 636,814 - -0.1 636,814 - +0.1 636,814 - -2.4 636,814 - +0.9 636,816 + -0.1 636,816 + -0.2 636,817 - -0.3 636,817 - +0.1 636,817 - -0.8 636,817 - -0.3 636,820 - -0.1 636,825 - +0.4 636,825 - +0.6 636,825 - -1.0 636,827 - -0.5 636,827 - -1.8 636,827 - -0.1 636,830 - -1.2 636,867 - -1.6 636,867 - -0.1 636,871 + -0.7 636,871 + +1.0 636,894 + -0.0 636,901 - -0.8 636,901 - +0.2 636,979 + BACOVA_05156 0.29 -0.6 636,980 - BACOVA_05156 0.30 -0.0 637,053 + BACOVA_05156 0.87 -0.2 637,064 + +0.0 637,085 - +0.4 637,094 - -0.3 637,096 - +0.0 637,096 - +0.4 637,096 - +0.2 637,191 - +0.4 637,191 - +0.6 637,222 - +0.5 637,397 - +0.2 637,397 - -0.4 637,399 - -0.8 637,461 + -1.5 637,582 + -1.1 637,585 + -0.3 637,586 - -1.2 637,592 + +0.6 637,605 + -0.4 637,612 - +0.4 637,638 + -0.3 637,639 - -1.3 637,639 - -0.1 637,668 + -0.1 637,698 - +0.4 637,698 - -0.1 637,817 + BACOVA_05157 0.14 -0.0 637,818 - BACOVA_05157 0.14 +1.2 637,885 + BACOVA_05157 0.22 +0.3 637,890 + BACOVA_05157 0.23 -0.0 637,890 + BACOVA_05157 0.23 -0.1 637,890 + BACOVA_05157 0.23 +0.2 637,890 + BACOVA_05157 0.23 -0.6 637,891 - BACOVA_05157 0.23 +0.1 637,891 - BACOVA_05157 0.23 +0.6 637,892 + BACOVA_05157 0.23 +0.2 637,892 + BACOVA_05157 0.23 -1.6 637,892 + BACOVA_05157 0.23 +0.7 637,893 - BACOVA_05157 0.23 -0.4 637,893 - BACOVA_05157 0.23 +0.2 637,895 - BACOVA_05157 0.23 -0.4 637,895 - BACOVA_05157 0.23 +0.3 637,895 - BACOVA_05157 0.23 +0.5 637,908 + BACOVA_05157 0.25 +0.2 637,921 - BACOVA_05157 0.27 +0.3 637,921 - BACOVA_05157 0.27 -0.8 637,954 + BACOVA_05157 0.31 -0.7 637,979 - BACOVA_05157 0.34 -1.6 637,987 - BACOVA_05157 0.35 +1.4 637,994 + BACOVA_05157 0.35 -0.4 638,033 + BACOVA_05157 0.40 +0.3 638,033 + BACOVA_05157 0.40 -1.0 638,034 - BACOVA_05157 0.40 +0.1
Or see this region's nucleotide sequence