Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_04669

Experiment: Xyloglucan from tamarind 2.5 mg/mL (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_04665 and BACOVA_04666 are separated by 72 nucleotidesBACOVA_04666 and BACOVA_04667 are separated by 38 nucleotidesBACOVA_04667 and BACOVA_04668 are separated by 58 nucleotidesBACOVA_04668 and BACOVA_04669 overlap by 4 nucleotidesBACOVA_04669 and BACOVA_04670 are separated by 2 nucleotidesBACOVA_04670 and BACOVA_04671 are separated by 1 nucleotides BACOVA_04665: BACOVA_04665 - hypothetical protein, at 47,191 to 47,706 _04665 BACOVA_04666: BACOVA_04666 - hypothetical protein, at 47,779 to 47,892 _04666 BACOVA_04667: BACOVA_04667 - hypothetical protein, at 47,931 to 48,101 _04667 BACOVA_04668: BACOVA_04668 - bacterial mobilization protein MobC, at 48,160 to 48,549 _04668 BACOVA_04669: BACOVA_04669 - relaxase/mobilization nuclease domain protein, at 48,546 to 49,469 _04669 BACOVA_04670: BACOVA_04670 - hypothetical protein, at 49,472 to 50,116 _04670 BACOVA_04671: BACOVA_04671 - site-specific recombinase, phage integrase family, at 50,118 to 51,326 _04671 Position (kb) 48 49 50Strain fitness (log2 ratio) -2 -1 0 1at 47.628 kb on - strand, within BACOVA_04665at 47.628 kb on - strand, within BACOVA_04665at 47.672 kb on - strandat 47.795 kb on - strand, within BACOVA_04666at 47.875 kb on - strand, within BACOVA_04666at 47.879 kb on - strand, within BACOVA_04666at 47.895 kb on - strandat 47.914 kb on - strandat 47.914 kb on - strandat 47.914 kb on - strandat 47.914 kb on - strandat 47.998 kb on - strand, within BACOVA_04667at 47.999 kb on - strand, within BACOVA_04667at 48.035 kb on - strand, within BACOVA_04667at 48.037 kb on - strand, within BACOVA_04667at 48.037 kb on - strand, within BACOVA_04667at 48.048 kb on - strand, within BACOVA_04667at 48.109 kb on - strandat 48.184 kb on - strandat 48.188 kb on + strandat 48.295 kb on + strand, within BACOVA_04668at 48.299 kb on + strand, within BACOVA_04668at 48.300 kb on - strand, within BACOVA_04668at 48.357 kb on + strand, within BACOVA_04668at 48.358 kb on - strand, within BACOVA_04668at 48.408 kb on + strand, within BACOVA_04668at 48.420 kb on - strand, within BACOVA_04668at 48.432 kb on + strand, within BACOVA_04668at 48.486 kb on - strand, within BACOVA_04668at 48.545 kb on + strandat 48.545 kb on + strandat 48.546 kb on - strandat 48.546 kb on - strandat 48.546 kb on - strandat 48.550 kb on + strandat 48.592 kb on - strandat 48.667 kb on + strand, within BACOVA_04669at 48.668 kb on - strand, within BACOVA_04669at 48.668 kb on - strand, within BACOVA_04669at 48.670 kb on + strand, within BACOVA_04669at 48.671 kb on - strand, within BACOVA_04669at 48.671 kb on - strand, within BACOVA_04669at 48.671 kb on - strand, within BACOVA_04669at 48.729 kb on - strand, within BACOVA_04669at 48.729 kb on - strand, within BACOVA_04669at 48.791 kb on - strand, within BACOVA_04669at 48.802 kb on - strand, within BACOVA_04669at 48.803 kb on + strand, within BACOVA_04669at 48.834 kb on + strand, within BACOVA_04669at 48.835 kb on - strand, within BACOVA_04669at 48.835 kb on - strand, within BACOVA_04669at 48.835 kb on - strand, within BACOVA_04669at 48.835 kb on - strand, within BACOVA_04669at 48.872 kb on + strand, within BACOVA_04669at 48.879 kb on - strand, within BACOVA_04669at 48.951 kb on - strand, within BACOVA_04669at 48.966 kb on - strand, within BACOVA_04669at 49.056 kb on + strand, within BACOVA_04669at 49.056 kb on + strand, within BACOVA_04669at 49.057 kb on - strand, within BACOVA_04669at 49.057 kb on - strand, within BACOVA_04669at 49.133 kb on - strand, within BACOVA_04669at 49.133 kb on - strand, within BACOVA_04669at 49.150 kb on - strand, within BACOVA_04669at 49.152 kb on - strand, within BACOVA_04669at 49.276 kb on - strand, within BACOVA_04669at 49.312 kb on - strand, within BACOVA_04669at 49.312 kb on - strand, within BACOVA_04669at 49.312 kb on - strand, within BACOVA_04669at 49.312 kb on - strand, within BACOVA_04669at 49.314 kb on - strand, within BACOVA_04669at 49.325 kb on - strand, within BACOVA_04669at 49.356 kb on - strand, within BACOVA_04669at 49.391 kb on + strandat 49.392 kb on - strandat 49.414 kb on - strandat 49.414 kb on - strandat 49.467 kb on + strandat 49.488 kb on + strandat 49.488 kb on + strandat 49.489 kb on - strandat 49.522 kb on - strandat 49.602 kb on + strand, within BACOVA_04670at 49.612 kb on + strand, within BACOVA_04670at 49.613 kb on - strand, within BACOVA_04670at 49.621 kb on + strand, within BACOVA_04670at 49.657 kb on + strand, within BACOVA_04670at 49.726 kb on + strand, within BACOVA_04670at 49.879 kb on + strand, within BACOVA_04670at 49.879 kb on + strand, within BACOVA_04670at 49.880 kb on - strand, within BACOVA_04670at 49.880 kb on - strand, within BACOVA_04670at 49.901 kb on - strand, within BACOVA_04670at 50.095 kb on + strandat 50.096 kb on - strandat 50.171 kb on + strandat 50.215 kb on + strandat 50.216 kb on - strandat 50.220 kb on - strandat 50.226 kb on + strandat 50.229 kb on - strandat 50.284 kb on + strand, within BACOVA_04671at 50.285 kb on - strand, within BACOVA_04671at 50.311 kb on - strand, within BACOVA_04671at 50.366 kb on + strand, within BACOVA_04671at 50.366 kb on + strand, within BACOVA_04671at 50.367 kb on - strand, within BACOVA_04671at 50.368 kb on + strand, within BACOVA_04671at 50.368 kb on + strand, within BACOVA_04671at 50.369 kb on - strand, within BACOVA_04671at 50.369 kb on - strand, within BACOVA_04671at 50.369 kb on - strand, within BACOVA_04671at 50.393 kb on - strand, within BACOVA_04671at 50.409 kb on - strand, within BACOVA_04671at 50.410 kb on + strand, within BACOVA_04671at 50.416 kb on + strand, within BACOVA_04671at 50.416 kb on + strand, within BACOVA_04671at 50.457 kb on + strand, within BACOVA_04671

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Per-strain Table

Position Strand Gene LocusTag Fraction Xyloglucan from tamarind 2.5 mg/mL (C)
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47,628 - BACOVA_04665 0.85 -0.1
47,628 - BACOVA_04665 0.85 +0.7
47,672 - +0.5
47,795 - BACOVA_04666 0.14 -0.4
47,875 - BACOVA_04666 0.84 -1.5
47,879 - BACOVA_04666 0.88 -0.4
47,895 - +0.0
47,914 - +0.2
47,914 - +0.0
47,914 - -0.1
47,914 - +0.5
47,998 - BACOVA_04667 0.39 +0.7
47,999 - BACOVA_04667 0.40 -1.4
48,035 - BACOVA_04667 0.61 -1.1
48,037 - BACOVA_04667 0.62 +0.6
48,037 - BACOVA_04667 0.62 -0.7
48,048 - BACOVA_04667 0.68 -1.4
48,109 - -1.6
48,184 - +0.6
48,188 + -1.6
48,295 + BACOVA_04668 0.35 -0.7
48,299 + BACOVA_04668 0.36 +0.4
48,300 - BACOVA_04668 0.36 +0.1
48,357 + BACOVA_04668 0.51 -0.7
48,358 - BACOVA_04668 0.51 -0.1
48,408 + BACOVA_04668 0.64 +0.3
48,420 - BACOVA_04668 0.67 +0.3
48,432 + BACOVA_04668 0.70 +0.9
48,486 - BACOVA_04668 0.84 +0.1
48,545 + -0.0
48,545 + +0.1
48,546 - -1.2
48,546 - +0.1
48,546 - +0.2
48,550 + +1.1
48,592 - -0.3
48,667 + BACOVA_04669 0.13 +0.6
48,668 - BACOVA_04669 0.13 +0.2
48,668 - BACOVA_04669 0.13 -0.0
48,670 + BACOVA_04669 0.13 +0.4
48,671 - BACOVA_04669 0.14 +0.0
48,671 - BACOVA_04669 0.14 +0.4
48,671 - BACOVA_04669 0.14 -0.4
48,729 - BACOVA_04669 0.20 +0.8
48,729 - BACOVA_04669 0.20 -0.7
48,791 - BACOVA_04669 0.27 -0.6
48,802 - BACOVA_04669 0.28 -1.3
48,803 + BACOVA_04669 0.28 +0.0
48,834 + BACOVA_04669 0.31 +1.1
48,835 - BACOVA_04669 0.31 +0.1
48,835 - BACOVA_04669 0.31 -0.8
48,835 - BACOVA_04669 0.31 -0.1
48,835 - BACOVA_04669 0.31 -0.3
48,872 + BACOVA_04669 0.35 +0.7
48,879 - BACOVA_04669 0.36 +0.0
48,951 - BACOVA_04669 0.44 +0.1
48,966 - BACOVA_04669 0.45 -0.8
49,056 + BACOVA_04669 0.55 +0.3
49,056 + BACOVA_04669 0.55 -0.1
49,057 - BACOVA_04669 0.55 -0.1
49,057 - BACOVA_04669 0.55 -0.2
49,133 - BACOVA_04669 0.64 -0.8
49,133 - BACOVA_04669 0.64 -1.2
49,150 - BACOVA_04669 0.65 -2.4
49,152 - BACOVA_04669 0.66 +0.4
49,276 - BACOVA_04669 0.79 +0.5
49,312 - BACOVA_04669 0.83 +0.0
49,312 - BACOVA_04669 0.83 -0.7
49,312 - BACOVA_04669 0.83 -2.5
49,312 - BACOVA_04669 0.83 +0.0
49,314 - BACOVA_04669 0.83 +1.6
49,325 - BACOVA_04669 0.84 -0.1
49,356 - BACOVA_04669 0.88 -1.1
49,391 + +0.7
49,392 - -0.1
49,414 - -0.3
49,414 - +0.1
49,467 + -0.4
49,488 + -0.1
49,488 + +0.0
49,489 - -0.4
49,522 - -0.3
49,602 + BACOVA_04670 0.20 -0.3
49,612 + BACOVA_04670 0.22 +0.3
49,613 - BACOVA_04670 0.22 -0.6
49,621 + BACOVA_04670 0.23 -0.7
49,657 + BACOVA_04670 0.29 -1.5
49,726 + BACOVA_04670 0.39 +0.4
49,879 + BACOVA_04670 0.63 +0.1
49,879 + BACOVA_04670 0.63 +0.0
49,880 - BACOVA_04670 0.63 -0.9
49,880 - BACOVA_04670 0.63 -0.1
49,901 - BACOVA_04670 0.67 +0.6
50,095 + +0.3
50,096 - -0.3
50,171 + +0.7
50,215 + -0.6
50,216 - -1.3
50,220 - +0.6
50,226 + +0.1
50,229 - -0.2
50,284 + BACOVA_04671 0.14 +0.4
50,285 - BACOVA_04671 0.14 +0.2
50,311 - BACOVA_04671 0.16 -0.2
50,366 + BACOVA_04671 0.21 +0.2
50,366 + BACOVA_04671 0.21 -0.2
50,367 - BACOVA_04671 0.21 +0.1
50,368 + BACOVA_04671 0.21 +1.7
50,368 + BACOVA_04671 0.21 -0.1
50,369 - BACOVA_04671 0.21 +0.8
50,369 - BACOVA_04671 0.21 -0.1
50,369 - BACOVA_04671 0.21 +0.1
50,393 - BACOVA_04671 0.23 -1.4
50,409 - BACOVA_04671 0.24 -0.8
50,410 + BACOVA_04671 0.24 +0.6
50,416 + BACOVA_04671 0.25 +0.2
50,416 + BACOVA_04671 0.25 -0.8
50,457 + BACOVA_04671 0.28 +0.7

Or see this region's nucleotide sequence