Experiment: Xyloglucan from tamarind 2.5 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_02296 and BACOVA_02297 overlap by 7 nucleotides BACOVA_02297 and BACOVA_02298 are separated by 18 nucleotides BACOVA_02298 and BACOVA_02299 overlap by 11 nucleotides BACOVA_02299 and BACOVA_02300 are separated by 24 nucleotides
BACOVA_02296: BACOVA_02296 - hypothetical protein, at 65,919 to 67,463
_02296
BACOVA_02297: BACOVA_02297 - hypothetical protein, at 67,457 to 68,197
_02297
BACOVA_02298: BACOVA_02298 - hypothetical protein, at 68,216 to 68,920
_02298
BACOVA_02299: BACOVA_02299 - hypothetical protein, at 68,910 to 69,587
_02299
BACOVA_02300: BACOVA_02300 - hypothetical protein, at 69,612 to 70,739
_02300
Position (kb)
68
69 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 67.254 kb on + strand, within BACOVA_02296 at 67.255 kb on - strand, within BACOVA_02296 at 67.255 kb on - strand, within BACOVA_02296 at 67.282 kb on - strand, within BACOVA_02296 at 67.327 kb on + strand at 67.328 kb on - strand at 67.330 kb on - strand at 67.330 kb on - strand at 67.341 kb on + strand at 67.407 kb on + strand at 67.473 kb on - strand at 67.573 kb on + strand, within BACOVA_02297 at 67.689 kb on - strand, within BACOVA_02297 at 67.737 kb on - strand, within BACOVA_02297 at 67.770 kb on + strand, within BACOVA_02297 at 67.770 kb on + strand, within BACOVA_02297 at 67.795 kb on - strand, within BACOVA_02297 at 67.795 kb on - strand, within BACOVA_02297 at 68.015 kb on + strand, within BACOVA_02297 at 68.018 kb on - strand, within BACOVA_02297 at 68.035 kb on - strand, within BACOVA_02297 at 68.040 kb on - strand, within BACOVA_02297 at 68.193 kb on - strand at 68.232 kb on + strand at 68.232 kb on + strand at 68.242 kb on - strand at 68.248 kb on + strand at 68.298 kb on + strand, within BACOVA_02298 at 68.476 kb on + strand, within BACOVA_02298 at 68.553 kb on - strand, within BACOVA_02298 at 68.564 kb on - strand, within BACOVA_02298 at 68.587 kb on - strand, within BACOVA_02298 at 68.587 kb on - strand, within BACOVA_02298 at 68.613 kb on - strand, within BACOVA_02298 at 68.615 kb on + strand, within BACOVA_02298 at 68.661 kb on - strand, within BACOVA_02298 at 68.661 kb on - strand, within BACOVA_02298 at 68.667 kb on + strand, within BACOVA_02298 at 68.667 kb on + strand, within BACOVA_02298 at 68.670 kb on - strand, within BACOVA_02298 at 68.772 kb on - strand, within BACOVA_02298 at 68.772 kb on - strand, within BACOVA_02298 at 68.835 kb on - strand, within BACOVA_02298 at 68.945 kb on + strand at 68.947 kb on + strand at 69.057 kb on + strand, within BACOVA_02299 at 69.058 kb on - strand, within BACOVA_02299 at 69.060 kb on + strand, within BACOVA_02299 at 69.060 kb on + strand, within BACOVA_02299 at 69.060 kb on + strand, within BACOVA_02299 at 69.060 kb on + strand, within BACOVA_02299 at 69.061 kb on - strand, within BACOVA_02299 at 69.161 kb on - strand, within BACOVA_02299 at 69.244 kb on + strand, within BACOVA_02299 at 69.244 kb on + strand, within BACOVA_02299 at 69.245 kb on - strand, within BACOVA_02299 at 69.303 kb on + strand, within BACOVA_02299 at 69.312 kb on + strand, within BACOVA_02299 at 69.332 kb on + strand, within BACOVA_02299 at 69.363 kb on + strand, within BACOVA_02299 at 69.453 kb on - strand, within BACOVA_02299 at 69.508 kb on - strand, within BACOVA_02299 at 69.582 kb on + strand at 69.585 kb on + strand at 69.594 kb on + strand at 69.611 kb on + strand at 69.619 kb on + strand at 69.623 kb on - strand at 69.627 kb on - strand at 69.640 kb on + strand at 69.641 kb on - strand at 69.641 kb on - strand at 69.641 kb on - strand at 69.778 kb on - strand, within BACOVA_02300 at 69.877 kb on + strand, within BACOVA_02300
Per-strain Table
Position Strand Gene LocusTag Fraction Xyloglucan from tamarind 2.5 mg/mL (C) remove 67,254 + BACOVA_02296 0.86 -1.2 67,255 - BACOVA_02296 0.86 +0.7 67,255 - BACOVA_02296 0.86 +2.3 67,282 - BACOVA_02296 0.88 -0.4 67,327 + -1.9 67,328 - +0.1 67,330 - -0.2 67,330 - -0.7 67,341 + -2.4 67,407 + -2.0 67,473 - +0.3 67,573 + BACOVA_02297 0.16 -0.7 67,689 - BACOVA_02297 0.31 +0.7 67,737 - BACOVA_02297 0.38 -1.2 67,770 + BACOVA_02297 0.42 -1.2 67,770 + BACOVA_02297 0.42 -0.0 67,795 - BACOVA_02297 0.46 +0.5 67,795 - BACOVA_02297 0.46 +0.4 68,015 + BACOVA_02297 0.75 +1.0 68,018 - BACOVA_02297 0.76 -1.0 68,035 - BACOVA_02297 0.78 +0.1 68,040 - BACOVA_02297 0.79 -0.5 68,193 - +0.7 68,232 + +0.8 68,232 + +0.1 68,242 - +0.7 68,248 + -0.5 68,298 + BACOVA_02298 0.12 +0.1 68,476 + BACOVA_02298 0.37 -0.5 68,553 - BACOVA_02298 0.48 -0.3 68,564 - BACOVA_02298 0.49 +0.1 68,587 - BACOVA_02298 0.53 +0.3 68,587 - BACOVA_02298 0.53 +0.3 68,613 - BACOVA_02298 0.56 +1.5 68,615 + BACOVA_02298 0.57 -1.2 68,661 - BACOVA_02298 0.63 +0.2 68,661 - BACOVA_02298 0.63 +0.0 68,667 + BACOVA_02298 0.64 -1.1 68,667 + BACOVA_02298 0.64 -0.5 68,670 - BACOVA_02298 0.64 -0.4 68,772 - BACOVA_02298 0.79 -0.7 68,772 - BACOVA_02298 0.79 -0.4 68,835 - BACOVA_02298 0.88 -0.7 68,945 + -1.5 68,947 + -0.7 69,057 + BACOVA_02299 0.22 +0.1 69,058 - BACOVA_02299 0.22 -0.2 69,060 + BACOVA_02299 0.22 -0.2 69,060 + BACOVA_02299 0.22 -2.1 69,060 + BACOVA_02299 0.22 -0.2 69,060 + BACOVA_02299 0.22 -1.2 69,061 - BACOVA_02299 0.22 +1.3 69,161 - BACOVA_02299 0.37 +0.7 69,244 + BACOVA_02299 0.49 -0.2 69,244 + BACOVA_02299 0.49 -1.1 69,245 - BACOVA_02299 0.49 +0.0 69,303 + BACOVA_02299 0.58 -0.2 69,312 + BACOVA_02299 0.59 -1.0 69,332 + BACOVA_02299 0.62 -0.5 69,363 + BACOVA_02299 0.67 +0.6 69,453 - BACOVA_02299 0.80 +1.0 69,508 - BACOVA_02299 0.88 -0.6 69,582 + -1.6 69,585 + +0.5 69,594 + -1.5 69,611 + -0.8 69,619 + +0.5 69,623 - -1.4 69,627 - +0.5 69,640 + +1.5 69,641 - -0.1 69,641 - +1.0 69,641 - +0.2 69,778 - BACOVA_02300 0.15 +0.1 69,877 + BACOVA_02300 0.23 +0.3
Or see this region's nucleotide sequence