Experiment: lim MOI1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt OHPLBJKB_03120 and OHPLBJKB_03121 overlap by 4 nucleotides OHPLBJKB_03121 and OHPLBJKB_03122 are separated by 2 nucleotides
OHPLBJKB_03120: OHPLBJKB_03120 - Enterobactin synthase component F, at 3,248,519 to 3,252,400
_03120
OHPLBJKB_03121: OHPLBJKB_03121 - Enterobactin biosynthesis protein YbdZ, at 3,252,397 to 3,252,615
_03121
OHPLBJKB_03122: OHPLBJKB_03122 - Enterochelin esterase, at 3,252,618 to 3,253,820
_03122
Position (kb) 3252
3253 Strain fitness (log2 ratio) -2
-1
0
1 at 3251.503 kb on + strand, within OHPLBJKB_03120 at 3251.581 kb on + strand, within OHPLBJKB_03120 at 3251.582 kb on - strand, within OHPLBJKB_03120 at 3251.596 kb on - strand, within OHPLBJKB_03120 at 3251.859 kb on + strand, within OHPLBJKB_03120 at 3251.870 kb on + strand, within OHPLBJKB_03120 at 3251.871 kb on - strand, within OHPLBJKB_03120 at 3251.931 kb on + strand, within OHPLBJKB_03120 at 3252.232 kb on + strand at 3252.233 kb on - strand at 3252.306 kb on + strand at 3252.307 kb on - strand at 3252.307 kb on - strand at 3252.568 kb on + strand, within OHPLBJKB_03121 at 3252.568 kb on + strand, within OHPLBJKB_03121 at 3252.569 kb on - strand, within OHPLBJKB_03121 at 3252.572 kb on + strand, within OHPLBJKB_03121 at 3252.572 kb on + strand, within OHPLBJKB_03121 at 3252.573 kb on - strand, within OHPLBJKB_03121 at 3252.615 kb on + strand at 3252.745 kb on - strand, within OHPLBJKB_03122 at 3252.754 kb on + strand, within OHPLBJKB_03122 at 3252.754 kb on + strand, within OHPLBJKB_03122 at 3252.858 kb on + strand, within OHPLBJKB_03122 at 3252.918 kb on + strand, within OHPLBJKB_03122 at 3252.955 kb on + strand, within OHPLBJKB_03122 at 3253.028 kb on + strand, within OHPLBJKB_03122 at 3253.028 kb on + strand, within OHPLBJKB_03122 at 3253.044 kb on + strand, within OHPLBJKB_03122 at 3253.135 kb on + strand, within OHPLBJKB_03122 at 3253.135 kb on + strand, within OHPLBJKB_03122 at 3253.135 kb on + strand, within OHPLBJKB_03122 at 3253.135 kb on + strand, within OHPLBJKB_03122 at 3253.135 kb on + strand, within OHPLBJKB_03122 at 3253.196 kb on + strand, within OHPLBJKB_03122 at 3253.197 kb on - strand, within OHPLBJKB_03122 at 3253.464 kb on + strand, within OHPLBJKB_03122 at 3253.464 kb on + strand, within OHPLBJKB_03122 at 3253.464 kb on + strand, within OHPLBJKB_03122 at 3253.464 kb on + strand, within OHPLBJKB_03122 at 3253.541 kb on + strand, within OHPLBJKB_03122
Per-strain Table
Position Strand Gene LocusTag Fraction lim MOI1 remove 3,251,503 + OHPLBJKB_03120 0.77 -0.5 3,251,581 + OHPLBJKB_03120 0.79 -0.5 3,251,582 - OHPLBJKB_03120 0.79 -0.2 3,251,596 - OHPLBJKB_03120 0.79 -0.1 3,251,859 + OHPLBJKB_03120 0.86 -0.2 3,251,870 + OHPLBJKB_03120 0.86 -1.1 3,251,871 - OHPLBJKB_03120 0.86 +0.4 3,251,931 + OHPLBJKB_03120 0.88 -0.9 3,252,232 + +0.8 3,252,233 - -0.7 3,252,306 + -0.1 3,252,307 - -0.3 3,252,307 - +0.5 3,252,568 + OHPLBJKB_03121 0.78 -0.6 3,252,568 + OHPLBJKB_03121 0.78 -0.3 3,252,569 - OHPLBJKB_03121 0.79 +0.2 3,252,572 + OHPLBJKB_03121 0.80 +1.0 3,252,572 + OHPLBJKB_03121 0.80 -0.6 3,252,573 - OHPLBJKB_03121 0.80 -0.5 3,252,615 + +0.3 3,252,745 - OHPLBJKB_03122 0.11 -0.2 3,252,754 + OHPLBJKB_03122 0.11 -0.1 3,252,754 + OHPLBJKB_03122 0.11 -0.6 3,252,858 + OHPLBJKB_03122 0.20 -1.0 3,252,918 + OHPLBJKB_03122 0.25 -1.4 3,252,955 + OHPLBJKB_03122 0.28 -1.3 3,253,028 + OHPLBJKB_03122 0.34 -0.2 3,253,028 + OHPLBJKB_03122 0.34 -1.4 3,253,044 + OHPLBJKB_03122 0.35 -0.4 3,253,135 + OHPLBJKB_03122 0.43 -2.0 3,253,135 + OHPLBJKB_03122 0.43 -1.0 3,253,135 + OHPLBJKB_03122 0.43 -0.6 3,253,135 + OHPLBJKB_03122 0.43 -1.2 3,253,135 + OHPLBJKB_03122 0.43 -0.4 3,253,196 + OHPLBJKB_03122 0.48 -1.0 3,253,197 - OHPLBJKB_03122 0.48 -1.2 3,253,464 + OHPLBJKB_03122 0.70 +0.0 3,253,464 + OHPLBJKB_03122 0.70 +0.8 3,253,464 + OHPLBJKB_03122 0.70 -1.4 3,253,464 + OHPLBJKB_03122 0.70 +0.7 3,253,541 + OHPLBJKB_03122 0.77 +0.0
Or see this region's nucleotide sequence