Strain Fitness in Escherichia coli HS(pFamp)R (ATCC 700891) around OHPLBJKB_00628

Experiment: lim MOI1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOHPLBJKB_00627 and OHPLBJKB_00628 are separated by 218 nucleotidesOHPLBJKB_00628 and OHPLBJKB_00629 are separated by 41 nucleotides OHPLBJKB_00627: OHPLBJKB_00627 - HTH-type transcriptional regulator LacR, at 645,008 to 645,991 _00627 OHPLBJKB_00628: OHPLBJKB_00628 - tRNA-binding protein YgjH, at 646,210 to 646,542 _00628 OHPLBJKB_00629: OHPLBJKB_00629 - Putrescine aminotransferase, at 646,584 to 648,074 _00629 Position (kb) 646 647Strain fitness (log2 ratio) -2 -1 0 1at 645.245 kb on + strand, within OHPLBJKB_00627at 645.361 kb on + strand, within OHPLBJKB_00627at 645.486 kb on + strand, within OHPLBJKB_00627at 645.486 kb on + strand, within OHPLBJKB_00627at 645.487 kb on - strand, within OHPLBJKB_00627at 645.487 kb on - strand, within OHPLBJKB_00627at 645.635 kb on + strand, within OHPLBJKB_00627at 645.636 kb on - strand, within OHPLBJKB_00627at 645.655 kb on + strand, within OHPLBJKB_00627at 645.681 kb on + strand, within OHPLBJKB_00627at 645.747 kb on + strand, within OHPLBJKB_00627at 645.747 kb on + strand, within OHPLBJKB_00627at 645.747 kb on + strand, within OHPLBJKB_00627at 645.747 kb on + strand, within OHPLBJKB_00627at 645.748 kb on - strand, within OHPLBJKB_00627at 645.748 kb on - strand, within OHPLBJKB_00627at 645.748 kb on - strand, within OHPLBJKB_00627at 645.786 kb on + strand, within OHPLBJKB_00627at 645.786 kb on + strand, within OHPLBJKB_00627at 645.786 kb on + strand, within OHPLBJKB_00627at 645.786 kb on + strand, within OHPLBJKB_00627at 645.786 kb on + strand, within OHPLBJKB_00627at 645.787 kb on - strand, within OHPLBJKB_00627at 645.787 kb on - strand, within OHPLBJKB_00627at 645.799 kb on + strand, within OHPLBJKB_00627at 645.800 kb on - strand, within OHPLBJKB_00627at 645.800 kb on - strand, within OHPLBJKB_00627at 645.828 kb on - strand, within OHPLBJKB_00627at 645.852 kb on + strand, within OHPLBJKB_00627at 645.926 kb on + strandat 645.926 kb on + strandat 645.926 kb on + strandat 645.927 kb on - strandat 645.927 kb on - strandat 645.980 kb on + strandat 645.980 kb on + strandat 645.981 kb on - strandat 645.981 kb on - strandat 646.032 kb on - strandat 646.032 kb on - strandat 646.032 kb on - strandat 646.044 kb on + strandat 646.045 kb on - strandat 646.070 kb on - strandat 646.070 kb on - strandat 646.225 kb on + strandat 646.226 kb on - strandat 646.303 kb on + strand, within OHPLBJKB_00628at 646.304 kb on - strand, within OHPLBJKB_00628at 646.310 kb on + strand, within OHPLBJKB_00628at 646.310 kb on + strand, within OHPLBJKB_00628at 646.363 kb on + strand, within OHPLBJKB_00628at 646.364 kb on - strand, within OHPLBJKB_00628at 646.364 kb on - strand, within OHPLBJKB_00628at 646.366 kb on + strand, within OHPLBJKB_00628at 646.367 kb on - strand, within OHPLBJKB_00628at 646.406 kb on + strand, within OHPLBJKB_00628at 646.406 kb on + strand, within OHPLBJKB_00628at 646.529 kb on + strandat 646.585 kb on + strandat 646.585 kb on + strandat 646.585 kb on + strandat 646.585 kb on + strandat 646.602 kb on + strandat 646.603 kb on - strandat 646.757 kb on + strand, within OHPLBJKB_00629at 646.871 kb on + strand, within OHPLBJKB_00629at 646.871 kb on + strand, within OHPLBJKB_00629at 646.872 kb on - strand, within OHPLBJKB_00629at 646.872 kb on - strand, within OHPLBJKB_00629at 646.899 kb on + strand, within OHPLBJKB_00629at 647.091 kb on + strand, within OHPLBJKB_00629at 647.091 kb on + strand, within OHPLBJKB_00629at 647.092 kb on - strand, within OHPLBJKB_00629at 647.184 kb on + strand, within OHPLBJKB_00629at 647.184 kb on + strand, within OHPLBJKB_00629at 647.189 kb on + strand, within OHPLBJKB_00629at 647.189 kb on + strand, within OHPLBJKB_00629at 647.189 kb on + strand, within OHPLBJKB_00629at 647.189 kb on + strand, within OHPLBJKB_00629at 647.189 kb on + strand, within OHPLBJKB_00629at 647.189 kb on + strand, within OHPLBJKB_00629at 647.189 kb on + strand, within OHPLBJKB_00629at 647.190 kb on - strand, within OHPLBJKB_00629at 647.190 kb on - strand, within OHPLBJKB_00629at 647.190 kb on - strand, within OHPLBJKB_00629at 647.190 kb on - strand, within OHPLBJKB_00629at 647.190 kb on - strand, within OHPLBJKB_00629at 647.194 kb on - strand, within OHPLBJKB_00629at 647.194 kb on - strand, within OHPLBJKB_00629at 647.226 kb on + strand, within OHPLBJKB_00629at 647.226 kb on + strand, within OHPLBJKB_00629at 647.227 kb on - strand, within OHPLBJKB_00629at 647.417 kb on + strand, within OHPLBJKB_00629at 647.418 kb on - strand, within OHPLBJKB_00629at 647.520 kb on - strand, within OHPLBJKB_00629at 647.523 kb on - strand, within OHPLBJKB_00629

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Per-strain Table

Position Strand Gene LocusTag Fraction lim MOI1
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645,245 + OHPLBJKB_00627 0.24 -0.4
645,361 + OHPLBJKB_00627 0.36 +0.6
645,486 + OHPLBJKB_00627 0.49 +0.6
645,486 + OHPLBJKB_00627 0.49 +1.2
645,487 - OHPLBJKB_00627 0.49 +0.5
645,487 - OHPLBJKB_00627 0.49 +0.3
645,635 + OHPLBJKB_00627 0.64 +0.5
645,636 - OHPLBJKB_00627 0.64 -0.5
645,655 + OHPLBJKB_00627 0.66 -1.1
645,681 + OHPLBJKB_00627 0.68 -0.4
645,747 + OHPLBJKB_00627 0.75 -0.1
645,747 + OHPLBJKB_00627 0.75 +1.4
645,747 + OHPLBJKB_00627 0.75 +0.2
645,747 + OHPLBJKB_00627 0.75 +0.5
645,748 - OHPLBJKB_00627 0.75 +0.3
645,748 - OHPLBJKB_00627 0.75 -0.1
645,748 - OHPLBJKB_00627 0.75 +0.2
645,786 + OHPLBJKB_00627 0.79 +1.0
645,786 + OHPLBJKB_00627 0.79 -0.3
645,786 + OHPLBJKB_00627 0.79 -0.1
645,786 + OHPLBJKB_00627 0.79 -2.6
645,786 + OHPLBJKB_00627 0.79 -1.6
645,787 - OHPLBJKB_00627 0.79 -1.6
645,787 - OHPLBJKB_00627 0.79 +0.8
645,799 + OHPLBJKB_00627 0.80 +0.4
645,800 - OHPLBJKB_00627 0.80 -0.9
645,800 - OHPLBJKB_00627 0.80 -0.8
645,828 - OHPLBJKB_00627 0.83 -0.6
645,852 + OHPLBJKB_00627 0.86 -0.6
645,926 + -0.7
645,926 + +0.1
645,926 + +1.0
645,927 - +0.9
645,927 - -0.5
645,980 + -0.6
645,980 + -0.9
645,981 - +0.4
645,981 - -1.0
646,032 - -0.7
646,032 - +0.5
646,032 - -0.1
646,044 + -0.6
646,045 - +1.2
646,070 - -0.1
646,070 - +0.5
646,225 + -0.3
646,226 - +0.1
646,303 + OHPLBJKB_00628 0.28 -0.5
646,304 - OHPLBJKB_00628 0.28 +0.2
646,310 + OHPLBJKB_00628 0.30 +0.1
646,310 + OHPLBJKB_00628 0.30 -0.7
646,363 + OHPLBJKB_00628 0.46 +0.5
646,364 - OHPLBJKB_00628 0.46 -0.2
646,364 - OHPLBJKB_00628 0.46 -0.1
646,366 + OHPLBJKB_00628 0.47 -0.1
646,367 - OHPLBJKB_00628 0.47 +0.9
646,406 + OHPLBJKB_00628 0.59 +0.6
646,406 + OHPLBJKB_00628 0.59 -0.9
646,529 + +0.0
646,585 + -0.4
646,585 + +0.6
646,585 + +0.1
646,585 + -1.7
646,602 + +0.4
646,603 - +0.6
646,757 + OHPLBJKB_00629 0.12 +1.3
646,871 + OHPLBJKB_00629 0.19 -0.0
646,871 + OHPLBJKB_00629 0.19 -2.1
646,872 - OHPLBJKB_00629 0.19 -0.5
646,872 - OHPLBJKB_00629 0.19 -2.2
646,899 + OHPLBJKB_00629 0.21 +0.5
647,091 + OHPLBJKB_00629 0.34 +0.9
647,091 + OHPLBJKB_00629 0.34 -0.9
647,092 - OHPLBJKB_00629 0.34 +0.3
647,184 + OHPLBJKB_00629 0.40 +1.2
647,184 + OHPLBJKB_00629 0.40 -0.6
647,189 + OHPLBJKB_00629 0.41 -1.1
647,189 + OHPLBJKB_00629 0.41 +0.5
647,189 + OHPLBJKB_00629 0.41 +0.1
647,189 + OHPLBJKB_00629 0.41 -1.6
647,189 + OHPLBJKB_00629 0.41 -0.1
647,189 + OHPLBJKB_00629 0.41 -0.0
647,189 + OHPLBJKB_00629 0.41 -0.1
647,190 - OHPLBJKB_00629 0.41 +0.7
647,190 - OHPLBJKB_00629 0.41 +0.4
647,190 - OHPLBJKB_00629 0.41 +0.3
647,190 - OHPLBJKB_00629 0.41 +0.1
647,190 - OHPLBJKB_00629 0.41 -0.1
647,194 - OHPLBJKB_00629 0.41 -0.4
647,194 - OHPLBJKB_00629 0.41 -0.5
647,226 + OHPLBJKB_00629 0.43 -1.0
647,226 + OHPLBJKB_00629 0.43 +0.6
647,227 - OHPLBJKB_00629 0.43 -0.1
647,417 + OHPLBJKB_00629 0.56 -0.4
647,418 - OHPLBJKB_00629 0.56 +0.5
647,520 - OHPLBJKB_00629 0.63 -0.2
647,523 - OHPLBJKB_00629 0.63 +0.1

Or see this region's nucleotide sequence