Strain Fitness in Escherichia fergusonii Becca around EFB2_04807

Experiment: phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2)
5,056,723	+		EFB2_04805	0.44	-0.1
5,056,727	+		EFB2_04805	0.46	+0.3
5,056,727	+		EFB2_04805	0.46	+0.3
5,056,728	-		EFB2_04805	0.46	+0.6
5,056,728	-		EFB2_04805	0.46	-1.5
5,056,730	+		EFB2_04805	0.47	+1.1
5,056,731	-		EFB2_04805	0.47	-0.3
5,056,731	-		EFB2_04805	0.47	-0.6
5,056,734	-		EFB2_04805	0.48	-0.1
5,056,737	-		EFB2_04805	0.49	-0.0
5,056,737	-		EFB2_04805	0.49	+1.3
5,056,762	+		EFB2_04805	0.57	-3.4
5,056,812	-		EFB2_04805	0.74	+0.6
5,056,830	-		EFB2_04805	0.81	+0.2
5,056,861	-				+0.1
5,056,871	+				-1.0
5,056,871	+				-0.5
5,056,894	-				-0.3
5,056,993	-				-0.0
5,056,993	-				-0.3
5,056,994	+				+0.8
5,056,994	+				+0.2
5,056,994	+				+0.4
5,056,995	-				-0.2
5,056,995	-				-3.3
5,056,995	-				+0.5
5,056,995	-				+2.2
5,056,995	-				-1.0
5,056,995	-				-2.0
5,056,995	-				-2.1
5,056,995	-				-0.7
5,056,997	-				+0.1
5,056,997	-				+0.3
5,057,018	+				-1.0
5,057,018	+				-1.9
5,057,055	+				-0.4
5,057,055	+				+1.9
5,057,056	-				+0.7
5,057,056	-				+1.0
5,057,056	-				+1.0
5,057,070	-				+0.2
5,057,072	-				-1.4
5,057,093	+				+0.1
5,057,093	+				-1.4
5,057,117	+				+0.1
5,057,117	+				+0.0
5,057,120	+				-1.3
5,057,120	+				+0.8
5,057,155	+				+0.3
5,057,157	+				+2.1
5,057,157	+				-0.1
5,057,157	+				+0.1
5,057,157	+				+0.2
5,057,157	+				-0.2
5,057,157	+				+1.3
5,057,157	+				+0.3
5,057,157	+				-0.3
5,057,157	+				+0.7
5,057,157	+				-1.0
5,057,157	+				-2.4
5,057,157	+				+0.4
5,057,157	+				-2.4
5,057,157	+				-0.2
5,057,157	+				-1.8
5,057,157	+				+0.3
5,057,157	+				+0.6
5,057,157	+				-0.4
5,057,157	+				-1.4
5,057,157	+				+0.6
5,057,157	+				+1.2
5,057,157	+				-0.2
5,057,158	-				+0.2
5,057,158	-				+0.1
5,057,158	-				+1.6
5,057,158	-				-1.0
5,057,158	-				-0.8
5,057,158	-				+0.2
5,057,158	-				+1.6
5,057,158	-				-3.1
5,057,158	-				-1.1
5,057,158	-				+0.7
5,057,158	-				-1.4
5,057,158	-				-0.2
5,057,158	-				+1.0
5,057,224	-				+1.3
5,057,252	-				-0.7
5,057,273	-				+0.0
5,057,273	-				+0.5
5,057,273	-				+0.6
5,057,273	-				+0.7
5,057,273	-				+0.3
5,057,350	+		EFB2_04806	0.12	+1.3
5,057,350	+		EFB2_04806	0.12	+0.3
5,057,351	-		EFB2_04806	0.12	-0.5
5,057,351	-		EFB2_04806	0.12	+0.6
5,057,366	+		EFB2_04806	0.16	-0.6
5,057,366	+		EFB2_04806	0.16	-2.4
5,057,367	-		EFB2_04806	0.16	-0.4
5,057,367	-		EFB2_04806	0.16	+0.6
5,057,367	-		EFB2_04806	0.16	-0.6
5,057,406	+		EFB2_04806	0.25	-1.1
5,057,407	+		EFB2_04806	0.25	+0.1
5,057,407	+		EFB2_04806	0.25	-1.1
5,057,407	+		EFB2_04806	0.25	-1.7
5,057,407	+		EFB2_04806	0.25	-2.4
5,057,407	+		EFB2_04806	0.25	-0.8
5,057,407	+		EFB2_04806	0.25	-2.6
5,057,407	+		EFB2_04806	0.25	+0.6
5,057,408	-		EFB2_04806	0.26	+0.0
5,057,408	-		EFB2_04806	0.26	+0.0
5,057,408	-		EFB2_04806	0.26	+0.6
5,057,416	+		EFB2_04806	0.28	+0.2
5,057,416	+		EFB2_04806	0.28	+0.6
5,057,416	+		EFB2_04806	0.28	+0.6
5,057,416	+		EFB2_04806	0.28	-0.7
5,057,416	+		EFB2_04806	0.28	+0.8
5,057,416	+		EFB2_04806	0.28	+1.6
5,057,417	-		EFB2_04806	0.28	-0.5
5,057,417	-		EFB2_04806	0.28	+0.4
5,057,427	-		EFB2_04806	0.30	+0.0
5,057,435	+		EFB2_04806	0.32	+0.6
5,057,441	+		EFB2_04806	0.33	+0.5
5,057,442	-		EFB2_04806	0.34	-1.0
5,057,442	-		EFB2_04806	0.34	+0.1
5,057,456	+		EFB2_04806	0.37	+1.1
5,057,456	+		EFB2_04806	0.37	-2.8
5,057,456	+		EFB2_04806	0.37	+0.6
5,057,483	+		EFB2_04806	0.43	-0.2
5,057,483	+		EFB2_04806	0.43	+0.5
5,057,492	-		EFB2_04806	0.45	+0.1
5,057,492	-		EFB2_04806	0.45	+0.5
5,057,556	+		EFB2_04806	0.60	-1.1
5,057,559	+		EFB2_04806	0.61	-1.1
5,057,560	-		EFB2_04806	0.61	+0.9
5,057,560	-		EFB2_04806	0.61	+1.2
5,057,560	-		EFB2_04806	0.61	-0.3
5,057,561	+		EFB2_04806	0.61	-0.6
5,057,561	+		EFB2_04806	0.61	-1.5
5,057,561	+		EFB2_04806	0.61	+0.2
5,057,561	+		EFB2_04806	0.61	+0.1
5,057,561	+		EFB2_04806	0.61	+1.8
5,057,581	-		EFB2_04806	0.66	+0.8
5,057,595	-		EFB2_04806	0.69	+0.3
5,057,599	+		EFB2_04806	0.70	+1.9
5,057,629	+		EFB2_04806	0.77	-0.6
5,057,645	-		EFB2_04806	0.81	-0.1
5,057,660	+		EFB2_04806	0.84	-0.3
5,057,661	-		EFB2_04806	0.85	-0.8
5,057,661	-		EFB2_04806	0.85	-0.6
5,057,672	-		EFB2_04806	0.87	+0.8
5,057,701	+				+1.5
5,057,737	-				+0.7
5,057,777	-		EFB2_04807	0.21	-2.9
5,057,806	+		EFB2_04807	0.32	-0.9
5,057,811	+		EFB2_04807	0.34	+1.2
5,057,811	+		EFB2_04807	0.34	-0.0
5,057,811	+		EFB2_04807	0.34	-1.3
5,057,811	+		EFB2_04807	0.34	-1.3
5,057,812	-		EFB2_04807	0.34	+0.8
5,057,815	+		EFB2_04807	0.36	-0.8
5,057,815	+		EFB2_04807	0.36	-0.9
5,057,816	-		EFB2_04807	0.36	-0.6
5,057,816	-		EFB2_04807	0.36	-0.9
5,057,824	+		EFB2_04807	0.39	-0.6
5,057,825	-		EFB2_04807	0.40	-1.7
5,057,825	-		EFB2_04807	0.40	+0.5
5,057,844	+		EFB2_04807	0.47	-1.7
5,057,844	+		EFB2_04807	0.47	+0.0
5,057,856	+		EFB2_04807	0.52	+0.6
5,057,857	-		EFB2_04807	0.52	+0.5
5,057,857	-		EFB2_04807	0.52	-0.5
5,057,870	-		EFB2_04807	0.57	-0.7
5,057,892	+		EFB2_04807	0.66	-0.5
5,057,892	+		EFB2_04807	0.66	-0.4
5,057,892	+		EFB2_04807	0.66	-2.6
5,057,892	+		EFB2_04807	0.66	-2.4
5,057,893	-		EFB2_04807	0.66	-1.4
5,057,893	-		EFB2_04807	0.66	+0.6
5,057,893	-		EFB2_04807	0.66	-0.6
5,057,893	-		EFB2_04807	0.66	+0.1
5,057,937	-		EFB2_04807	0.83	+0.2
5,057,937	-		EFB2_04807	0.83	-0.6
5,058,005	+				-1.0
5,058,005	+				-0.7
5,058,006	-				+0.4
5,058,006	-				+0.1
5,058,029	-				+0.2
5,058,075	+				-4.2
5,058,105	+				-0.0
5,058,105	+				+1.1
5,058,106	-				-1.2
5,058,107	+				-0.4
5,058,107	+				+1.2
5,058,108	-				+3.0
5,058,108	-				-0.6
5,058,108	-				-0.9
5,058,108	-				-0.6
5,058,108	-				-0.5
5,058,140	+				+0.4
5,058,155	+				-0.0
5,058,156	-				-0.2
5,058,181	-				-1.0
5,058,181	-				+0.4
5,058,181	-				+0.4
5,058,194	+				-0.2
5,058,213	+				-3.1
5,058,213	+				+1.4
5,058,213	+				+0.3
5,058,213	+				+0.8
5,058,214	-				+1.3
5,058,216	+				+0.5
5,058,234	+				-0.9
5,058,234	+				-1.0
5,058,234	+				-0.1
5,058,234	+				+0.8
5,058,234	+				-2.1
5,058,234	+				+1.4
5,058,234	+				+0.6
5,058,234	+				+0.2
5,058,234	+				+0.5
5,058,234	+				-1.3
5,058,234	+				-1.4
5,058,235	-				-2.0
5,058,235	-				-1.4
5,058,235	-				-0.5
5,058,235	-				-0.7
5,058,235	-				-2.6
5,058,235	-				+0.8
5,058,235	-				-1.2
5,058,235	-				-1.0
5,058,235	-				+0.3
5,058,235	-				+0.5
5,058,235	-				+0.2
5,058,235	-				+0.7
5,058,240	+				+0.7
5,058,240	+				+1.4
5,058,240	+				+0.2
5,058,240	+				-1.0
5,058,240	+				+2.3
5,058,241	-				+1.0
5,058,241	-				+2.5
5,058,241	-				+0.2
5,058,241	-				-0.7
5,058,250	+				+2.5
5,058,250	+				-1.6
5,058,251	-				+0.6
5,058,258	+				-2.5
5,058,271	+				+0.4
5,058,271	+				+0.8
5,058,272	-				+0.5
5,058,272	-				-1.7
5,058,272	-				-0.0
5,058,294	+				-0.2
5,058,294	+				+0.9
5,058,295	-				-0.2
5,058,295	-				-1.3
5,058,298	+				+0.5
5,058,298	+				-0.2
5,058,298	+				-0.3
5,058,299	-				+0.6
5,058,299	-				-1.7
5,058,299	-				+0.2
5,058,299	-				-1.2
5,058,299	-				-1.1
5,058,299	-				-0.3
5,058,303	+				-2.9
5,058,303	+				-0.6
5,058,303	+				-2.5
5,058,303	+				-0.1
5,058,304	-				+0.1
5,058,304	-				+0.6
5,058,304	-				+0.5
5,058,304	-				+0.8
5,058,304	-				-0.2
5,058,304	-				-0.5
5,058,313	+				+0.7
5,058,314	-				+0.6
5,058,363	+				-0.9
5,058,363	+				+0.6
5,058,369	+				-0.5
5,058,369	+				+0.1
5,058,370	-				-1.9
5,058,437	+				-1.4
5,058,437	+				+0.6
5,058,437	+				+1.4
5,058,438	-				-3.3
5,058,447	+				+1.4
5,058,447	+				+0.2
5,058,448	-				+0.2
5,058,448	-				-0.7
5,058,448	-				+0.5
5,058,448	-				-1.0
5,058,460	+				+0.5
5,058,463	+				+0.3
5,058,463	+				-3.1
5,058,463	+				+0.5
5,058,463	+				+0.3
5,058,463	+				-0.4
5,058,463	+				+0.1
5,058,464	-				+0.0
5,058,464	-				-0.1
5,058,464	-				-1.5
5,058,637	+				-0.6
5,058,638	-				-1.4
5,058,660	-				+0.8
5,058,660	-				+0.5
5,058,660	-				+0.1
5,058,800	+		EFB2_04808	0.15	+0.2
5,058,800	+		EFB2_04808	0.15	-0.0
5,058,800	+		EFB2_04808	0.15	+1.1
5,058,801	-		EFB2_04808	0.15	-1.1
5,058,801	-		EFB2_04808	0.15	+0.8
5,058,801	-		EFB2_04808	0.15	-2.5
5,058,852	+		EFB2_04808	0.17	+1.8
5,058,881	+		EFB2_04808	0.18	-2.4
5,058,881	+		EFB2_04808	0.18	+0.3
5,058,881	+		EFB2_04808	0.18	+1.3
5,058,882	-		EFB2_04808	0.18	+0.5
5,058,882	-		EFB2_04808	0.18	+1.7
5,058,882	-		EFB2_04808	0.18	-2.3
5,058,910	+		EFB2_04808	0.19	+1.1
5,058,910	+		EFB2_04808	0.19	+0.7
5,058,910	+		EFB2_04808	0.19	+0.2
5,058,911	-		EFB2_04808	0.20	-0.1
5,058,911	-		EFB2_04808	0.20	-0.3