Strain Fitness in Escherichia fergusonii Becca around EFB2_04728

Experiment: phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2)
4,975,713	+		EFB2_04725	0.84	-0.2
4,975,713	+		EFB2_04725	0.84	+0.8
4,975,713	+		EFB2_04725	0.84	+0.6
4,975,713	+		EFB2_04725	0.84	-0.2
4,975,713	+		EFB2_04725	0.84	-0.9
4,975,714	-		EFB2_04725	0.84	+0.4
4,975,714	-		EFB2_04725	0.84	+2.9
4,975,714	-		EFB2_04725	0.84	-1.1
4,975,714	-		EFB2_04725	0.84	+1.5
4,975,714	-		EFB2_04725	0.84	+0.1
4,975,714	-		EFB2_04725	0.84	+0.1
4,975,714	-		EFB2_04725	0.84	+0.3
4,975,714	-		EFB2_04725	0.84	+0.4
4,975,714	-		EFB2_04725	0.84	-1.8
4,975,714	-		EFB2_04725	0.84	-0.3
4,975,714	-		EFB2_04725	0.84	-2.1
4,975,784	-				+0.6
4,975,813	-				-0.1
4,975,813	-				+0.4
4,975,813	-				+0.5
4,975,813	-				+0.8
4,975,820	+				+0.4
4,975,821	-				-1.1
4,975,821	-				+0.3
4,975,821	-				-3.1
4,975,860	+				-0.4
4,975,860	+				-2.0
4,975,860	+				-2.1
4,975,860	+				-2.3
4,975,861	-				+0.4
4,975,900	+				+1.8
4,975,909	+				-0.5
4,975,909	+				-0.7
4,975,909	+				-0.0
4,975,909	+				+1.1
4,975,910	-				-3.1
4,975,910	-				+1.2
4,975,910	-				-0.4
4,975,910	-				+1.6
4,975,910	-				+1.1
4,975,910	-				+0.1
4,975,910	-				+1.1
4,975,929	+				+0.4
4,975,929	+				+1.2
4,975,930	-				+0.3
4,975,930	-				-1.6
4,975,950	-				-1.1
4,975,950	-				+2.9
4,975,972	+				-1.7
4,975,972	+				-0.1
4,975,972	+				-2.4
4,975,972	+				-1.1
4,975,973	-				-0.5
4,975,973	-				+0.2
4,975,973	-				-2.5
4,975,979	+				-2.3
4,975,979	+				-1.3
4,975,979	+				-1.9
4,975,980	-				-0.4
4,975,980	-				+0.7
4,975,980	-				+0.3
4,975,996	-				-0.2
4,975,997	+				+0.5
4,975,997	+				+0.1
4,975,997	+				-2.8
4,975,997	+				+0.2
4,975,997	+				-1.5
4,975,997	+				+0.3
4,975,998	-				-0.7
4,975,998	-				-0.5
4,975,998	-				-0.1
4,976,007	+				+0.2
4,976,020	+				+0.3
4,976,020	+				+1.6
4,976,020	+				-2.7
4,976,020	+				+1.5
4,976,020	+				+1.2
4,976,021	-				+0.1
4,976,021	-				+0.6
4,976,021	-				+0.8
4,976,021	-				+0.7
4,976,021	-				-0.2
4,976,023	+				+0.3
4,976,023	+				-0.2
4,976,065	-				-0.1
4,976,086	+				-0.9
4,976,086	+				-0.5
4,976,087	-				+0.7
4,976,095	+				-1.1
4,976,095	+				-2.8
4,976,095	+				+0.2
4,976,095	+				-0.1
4,976,095	+				-0.0
4,976,095	+				-0.2
4,976,095	+				+0.2
4,976,095	+				+0.5
4,976,095	+				+1.1
4,976,095	+				+0.4
4,976,095	+				-2.3
4,976,095	+				+0.2
4,976,095	+				-0.2
4,976,095	+				-0.4
4,976,096	-				-0.1
4,976,096	-				+0.4
4,976,096	-				-1.4
4,976,096	-				-0.2
4,976,096	-				-0.4
4,976,096	-				+0.6
4,976,096	-				+1.0
4,976,096	-				-2.7
4,976,099	+				-0.1
4,976,099	+				-1.6
4,976,099	+				+0.9
4,976,099	+				+0.6
4,976,099	+				+1.1
4,976,099	+				-0.6
4,976,099	+				+1.4
4,976,099	+				-0.2
4,976,099	+				+0.8
4,976,099	+				-1.2
4,976,099	+				-0.4
4,976,099	+				-1.4
4,976,099	+				+0.1
4,976,099	+				-1.7
4,976,100	-		EFB2_04726	0.10	+0.9
4,976,100	-		EFB2_04726	0.10	-0.3
4,976,100	-		EFB2_04726	0.10	-0.5
4,976,100	-		EFB2_04726	0.10	+0.4
4,976,100	-		EFB2_04726	0.10	-0.1
4,976,100	-		EFB2_04726	0.10	+0.5
4,976,100	-		EFB2_04726	0.10	-0.5
4,976,100	-		EFB2_04726	0.10	+1.5
4,976,149	+		EFB2_04726	0.32	+1.3
4,976,149	+		EFB2_04726	0.32	-0.4
4,976,149	+		EFB2_04726	0.32	-2.4
4,976,178	+		EFB2_04726	0.46	-1.5
4,976,179	-		EFB2_04726	0.46	+0.0
4,976,179	-		EFB2_04726	0.46	-0.7
4,976,179	-		EFB2_04726	0.46	+3.9
4,976,187	-		EFB2_04726	0.50	-0.1
4,976,252	-		EFB2_04726	0.79	+3.2
4,976,285	-				+0.1
4,976,298	-				+1.9
4,976,308	+				+0.8
4,976,308	+				-2.9
4,976,308	+				-1.1
4,976,308	+				+1.3
4,976,308	+				-0.7
4,976,308	+				-2.9
4,976,309	-				+1.0
4,976,309	-				+0.7
4,976,309	-				-2.7
4,976,309	-				-0.3
4,976,309	-				+1.2
4,976,309	-				+1.1
4,976,309	-				-1.0
4,976,309	-				-2.1
4,976,309	-				-3.8
4,976,309	-				-2.4
4,976,309	-				+1.1
4,976,309	-				+0.6
4,976,309	-				+0.2
4,976,309	-				+0.5
4,976,309	-				-0.7
4,976,309	-				-2.0
4,976,309	-				-1.0
4,976,309	-				-2.8
4,976,309	-				+0.9
4,976,309	-				-4.0
4,976,312	+				+0.7
4,976,312	+				+0.1
4,976,312	+				-0.7
4,976,312	+				-0.4
4,976,312	+				-0.3
4,976,312	+				-0.6
4,976,312	+				+0.6
4,976,312	+				+0.5
4,976,313	-				+0.8
4,976,313	-				-2.2
4,976,313	-				+1.0
4,976,313	-				+1.1
4,976,313	-				+2.1
4,976,313	-				-1.6
4,976,313	-				-0.4
4,976,314	+				+1.0
4,976,314	+				-1.3
4,976,314	+				+1.0
4,976,314	+				+1.3
4,976,314	+				-0.1
4,976,314	+				+1.9
4,976,315	-				-1.8
4,976,315	-				-1.6
4,976,315	-				-0.5
4,976,315	-				-3.1
4,976,315	-				-1.4
4,976,315	-				-1.1
4,976,317	+				-0.6
4,976,317	+				-0.2
4,976,317	+				-0.9
4,976,317	+				+0.4
4,976,317	+				-0.9
4,976,329	+				+1.2
4,976,329	+				-0.9
4,976,329	+				+1.1
4,976,329	+				-1.7
4,976,329	+				-3.1
4,976,329	+				-1.4
4,976,329	+				+0.2
4,976,330	-				+1.3
4,976,330	-				-0.1
4,976,330	-				-0.2
4,976,330	-				-2.9
4,976,330	-				+1.8
4,976,330	-				+0.1
4,976,330	-				+2.2
4,976,330	-				-1.8
4,976,330	-				+1.1
4,976,330	-				-1.6
4,976,330	-				+1.8
4,976,360	-				-2.5
4,976,380	+				-2.7
4,976,425	+				+0.2
4,976,460	+				-0.7
4,976,460	+				-3.5
4,976,460	+				-0.0
4,976,460	+				+0.9
4,976,460	+				+0.7
4,976,460	+				+1.7
4,976,460	+				-2.1
4,976,460	+				-0.5
4,976,461	-				+0.8
4,976,461	-				+1.7
4,976,461	-				+0.2
4,976,461	-				+0.7
4,976,461	-				-0.6
4,976,461	-				+0.2
4,976,461	-				+1.1
4,976,462	+				-1.2
4,976,462	+				-1.4
4,976,462	+				-0.8
4,976,463	-				+0.0
4,976,463	-				-0.5
4,976,463	-				+0.9
4,976,463	-				-0.3
4,976,463	-				-2.2
4,976,463	-				-2.1
4,976,479	-				-0.2
4,976,528	+		EFB2_04727	0.28	+0.2
4,976,528	+		EFB2_04727	0.28	+0.4
4,976,528	+		EFB2_04727	0.28	-0.7
4,976,528	+		EFB2_04727	0.28	-2.7
4,976,529	-		EFB2_04727	0.29	+0.0
4,976,529	-		EFB2_04727	0.29	-1.0
4,976,529	-		EFB2_04727	0.29	-1.9
4,976,529	-		EFB2_04727	0.29	-0.6
4,976,594	+				-1.4
4,976,594	+				+1.3
4,976,594	+				+0.1
4,976,594	+				-0.7
4,976,594	+				-0.1
4,976,594	+				+0.8
4,976,594	+				+0.3
4,976,594	+				+0.6
4,976,594	+				+0.2
4,976,595	-				-0.1
4,976,595	-				+0.3
4,976,595	-				-0.5
4,976,595	-				-1.1
4,976,595	-				+0.6
4,976,595	-				-0.9
4,976,595	-				+0.6
4,976,595	-				-1.6
4,976,595	-				+0.7
4,976,598	+				-0.6
4,976,598	+				+1.7
4,976,598	+				+1.1
4,976,599	-				+0.8
4,976,599	-				+0.3
4,976,599	-				-0.3
4,976,599	-				+0.5
4,976,639	-				+0.7
4,976,639	-				-0.3
4,976,639	-				-1.4
4,976,654	+				+0.8
4,976,654	+				-0.7
4,976,654	+				-0.4
4,976,654	+				+0.1
4,976,655	-				+0.6
4,976,655	-				+1.4
4,976,681	-				+0.2
4,976,689	+				-0.4
4,976,689	+				+1.0
4,976,689	+				+1.2
4,976,689	+				-1.4
4,976,690	-				+1.0
4,976,690	-				-0.1
4,976,690	-				+0.1
4,976,690	-				-2.5
4,976,763	+		EFB2_04728	0.19	+1.0
4,976,763	+		EFB2_04728	0.19	+0.4
4,976,764	-		EFB2_04728	0.19	-1.7
4,976,824	+		EFB2_04728	0.36	-0.3
4,976,825	-		EFB2_04728	0.36	-0.0
4,976,825	-		EFB2_04728	0.36	+0.0
4,976,827	-		EFB2_04728	0.36	+0.6
4,976,827	-		EFB2_04728	0.36	-2.9
4,976,827	-		EFB2_04728	0.36	+3.7
4,976,851	+		EFB2_04728	0.43	-1.2
4,976,851	+		EFB2_04728	0.43	-0.5
4,976,851	+		EFB2_04728	0.43	+0.9
4,976,859	+		EFB2_04728	0.45	+0.6
4,976,860	-		EFB2_04728	0.45	-1.8
4,976,874	+		EFB2_04728	0.49	+0.4
4,976,874	+		EFB2_04728	0.49	+1.6
4,976,874	+		EFB2_04728	0.49	+1.9
4,976,875	-		EFB2_04728	0.50	+0.4
4,976,875	-		EFB2_04728	0.50	-2.0
4,976,875	-		EFB2_04728	0.50	+2.4
4,976,875	-		EFB2_04728	0.50	+1.3
4,976,877	+		EFB2_04728	0.50	-0.4
4,976,878	-		EFB2_04728	0.50	-0.2
4,976,886	+		EFB2_04728	0.53	+0.5
4,976,886	+		EFB2_04728	0.53	-1.5
4,976,887	-		EFB2_04728	0.53	-0.6
4,976,894	+		EFB2_04728	0.55	-1.9
4,976,895	-		EFB2_04728	0.55	+0.5
4,976,908	+		EFB2_04728	0.59	+0.2
4,976,908	+		EFB2_04728	0.59	+0.6
4,976,908	+		EFB2_04728	0.59	+0.7
4,976,908	+		EFB2_04728	0.59	+0.5
4,976,908	+		EFB2_04728	0.59	+0.7
4,976,909	-		EFB2_04728	0.59	+0.4
4,976,910	+		EFB2_04728	0.59	-1.4
4,976,911	-		EFB2_04728	0.60	-0.5
4,976,911	-		EFB2_04728	0.60	+0.1
4,976,946	+		EFB2_04728	0.69	+1.1
4,976,952	+		EFB2_04728	0.71	-0.5
4,976,957	-		EFB2_04728	0.72	+0.4
4,977,090	+		EFB2_04729	0.19	+0.2
4,977,090	+		EFB2_04729	0.19	+0.6
4,977,090	+		EFB2_04729	0.19	-0.3
4,977,090	+		EFB2_04729	0.19	-0.0
4,977,090	+		EFB2_04729	0.19	+1.1
4,977,091	-		EFB2_04729	0.20	-0.9
4,977,091	-		EFB2_04729	0.20	+0.1
4,977,091	-		EFB2_04729	0.20	+2.4
4,977,119	+		EFB2_04729	0.26	+0.9
4,977,120	-		EFB2_04729	0.26	+0.1
4,977,120	-		EFB2_04729	0.26	-1.4
4,977,120	-		EFB2_04729	0.26	-0.7
4,977,120	-		EFB2_04729	0.26	+1.5
4,977,120	-		EFB2_04729	0.26	-0.6
4,977,124	+		EFB2_04729	0.27	-0.5
4,977,124	+		EFB2_04729	0.27	-0.0
4,977,124	+		EFB2_04729	0.27	+0.8
4,977,124	+		EFB2_04729	0.27	-0.6
4,977,125	-		EFB2_04729	0.27	-3.0
4,977,125	-		EFB2_04729	0.27	+1.9
4,977,180	+		EFB2_04729	0.39	+1.0
4,977,181	-		EFB2_04729	0.39	-1.2
4,977,190	-		EFB2_04729	0.41	+1.6
4,977,190	-		EFB2_04729	0.41	+1.4
4,977,190	-		EFB2_04729	0.41	+1.8
4,977,190	-		EFB2_04729	0.41	-1.7
4,977,220	+		EFB2_04729	0.48	+1.5
4,977,220	+		EFB2_04729	0.48	-1.2
4,977,221	-		EFB2_04729	0.48	+0.7
4,977,244	+		EFB2_04729	0.53	+0.4
4,977,256	-		EFB2_04729	0.56	+0.3
4,977,256	-		EFB2_04729	0.56	-2.7
4,977,256	-		EFB2_04729	0.56	+0.7
4,977,276	+		EFB2_04729	0.60	+0.9
4,977,276	+		EFB2_04729	0.60	+0.4
4,977,276	+		EFB2_04729	0.60	+0.7
4,977,276	+		EFB2_04729	0.60	+1.0
4,977,276	+		EFB2_04729	0.60	-1.1
4,977,276	+		EFB2_04729	0.60	-0.8
4,977,276	+		EFB2_04729	0.60	+1.5
4,977,277	-		EFB2_04729	0.60	+0.3
4,977,277	-		EFB2_04729	0.60	-3.3
4,977,277	-		EFB2_04729	0.60	-0.0
4,977,277	-		EFB2_04729	0.60	+0.5
4,977,277	-		EFB2_04729	0.60	-0.6
4,977,277	-		EFB2_04729	0.60	-2.3
4,977,277	-		EFB2_04729	0.60	+2.1
4,977,285	+		EFB2_04729	0.62	+0.6
4,977,295	+		EFB2_04729	0.64	+0.6
4,977,296	-		EFB2_04729	0.64	-3.1
4,977,314	-		EFB2_04729	0.68	-1.2
4,977,314	-		EFB2_04729	0.68	-0.5
4,977,314	-		EFB2_04729	0.68	+0.0
4,977,346	+		EFB2_04729	0.75	-0.1
4,977,346	+		EFB2_04729	0.75	+0.2
4,977,347	-		EFB2_04729	0.76	-3.6
4,977,347	-		EFB2_04729	0.76	+1.1
4,977,353	-		EFB2_04729	0.77	+1.4
4,977,361	+		EFB2_04729	0.79	+0.3
4,977,361	+		EFB2_04729	0.79	-0.2
4,977,361	+		EFB2_04729	0.79	-0.6
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