Strain Fitness in Escherichia fergusonii Becca around EFB2_03918

Experiment: phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2)
4,102,990	+		EFB2_03916	0.71	-0.4
4,102,990	+		EFB2_03916	0.71	+2.4
4,102,990	+		EFB2_03916	0.71	+0.5
4,102,990	+		EFB2_03916	0.71	-1.3
4,102,990	+		EFB2_03916	0.71	-0.9
4,102,990	+		EFB2_03916	0.71	-0.4
4,102,990	+		EFB2_03916	0.71	-0.6
4,102,990	+		EFB2_03916	0.71	-1.6
4,102,990	+		EFB2_03916	0.71	+5.2
4,102,991	-		EFB2_03916	0.71	-1.5
4,102,991	-		EFB2_03916	0.71	+1.2
4,102,991	-		EFB2_03916	0.71	-0.8
4,102,991	-		EFB2_03916	0.71	-0.8
4,102,991	-		EFB2_03916	0.71	+0.3
4,102,991	-		EFB2_03916	0.71	-0.6
4,102,991	-		EFB2_03916	0.71	+1.2
4,102,991	-		EFB2_03916	0.71	+1.6
4,102,991	-		EFB2_03916	0.71	-2.1
4,102,991	-		EFB2_03916	0.71	+1.7
4,102,991	-		EFB2_03916	0.71	+0.2
4,102,993	+		EFB2_03916	0.72	-2.6
4,102,993	+		EFB2_03916	0.72	+1.0
4,102,993	+		EFB2_03916	0.72	-0.9
4,102,993	+		EFB2_03916	0.72	+0.1
4,102,993	+		EFB2_03916	0.72	+0.6
4,102,993	+		EFB2_03916	0.72	+1.0
4,102,993	+		EFB2_03916	0.72	-2.2
4,102,993	+		EFB2_03916	0.72	-0.4
4,102,993	+		EFB2_03916	0.72	+0.4
4,102,993	+		EFB2_03916	0.72	-0.4
4,102,993	+		EFB2_03916	0.72	+1.1
4,102,993	+		EFB2_03916	0.72	-1.5
4,102,993	+		EFB2_03916	0.72	-1.0
4,102,993	+		EFB2_03916	0.72	-1.5
4,102,993	+		EFB2_03916	0.72	+1.6
4,102,994	-		EFB2_03916	0.72	+0.3
4,102,994	-		EFB2_03916	0.72	-1.4
4,102,994	-		EFB2_03916	0.72	+1.0
4,102,994	-		EFB2_03916	0.72	-0.1
4,102,994	-		EFB2_03916	0.72	-1.4
4,102,994	-		EFB2_03916	0.72	-0.6
4,102,994	-		EFB2_03916	0.72	+2.0
4,102,994	-		EFB2_03916	0.72	+0.3
4,102,994	-		EFB2_03916	0.72	+0.1
4,102,994	-		EFB2_03916	0.72	-2.0
4,103,000	+		EFB2_03916	0.73	+1.0
4,103,001	-		EFB2_03916	0.74	+0.2
4,103,001	-		EFB2_03916	0.74	-4.2
4,103,001	-		EFB2_03916	0.74	-0.3
4,103,001	-		EFB2_03916	0.74	+0.4
4,103,069	+		EFB2_03916	0.89	+0.0
4,103,069	+		EFB2_03916	0.89	-2.4
4,103,070	-		EFB2_03916	0.89	-2.4
4,103,070	-		EFB2_03916	0.89	+1.7
4,103,070	-		EFB2_03916	0.89	-1.0
4,103,070	-		EFB2_03916	0.89	+0.8
4,103,070	-		EFB2_03916	0.89	+1.8
4,103,070	-		EFB2_03916	0.89	+0.7
4,103,098	+				-1.2
4,103,098	+				-1.9
4,103,098	+				+0.5
4,103,098	+				+0.5
4,103,098	+				+1.3
4,103,098	+				-1.7
4,103,099	-				-2.0
4,103,099	-				+0.9
4,103,099	-				-1.5
4,103,099	-				+0.8
4,103,099	-				-1.1
4,103,099	-				+1.3
4,103,099	-				+0.2
4,103,099	-				+1.0
4,103,099	-				+1.3
4,103,099	-				+0.8
4,103,102	+				+1.1
4,103,102	+				+1.0
4,103,102	+				-0.7
4,103,102	+				-0.7
4,103,102	+				+1.9
4,103,102	+				-2.2
4,103,103	-				+1.7
4,103,103	-				+0.2
4,103,103	-				+1.2
4,103,103	-				+1.1
4,103,103	-				+1.0
4,103,103	-				+0.2
4,103,103	-				+0.9
4,103,103	-				-2.2
4,103,103	-				-2.7
4,103,111	+				+1.0
4,103,111	+				+0.4
4,103,111	+				-1.4
4,103,111	+				+1.2
4,103,111	+				+1.6
4,103,111	+				-0.8
4,103,111	+				-2.1
4,103,111	+				-0.3
4,103,112	-				-2.9
4,103,112	-				-3.8
4,103,112	-				-2.7
4,103,112	-				-0.1
4,103,112	-				-1.6
4,103,112	-				+0.2
4,103,112	-				+0.2
4,103,112	-				+1.1
4,103,112	-				-1.1
4,103,112	-				-3.0
4,103,112	-				-0.6
4,103,112	-				-1.5
4,103,112	-				-0.6
4,103,130	-				+0.4
4,103,145	+				+0.3
4,103,145	+				+0.1
4,103,145	+				+0.9
4,103,145	+				+1.0
4,103,146	-				+0.2
4,103,163	+				-0.4
4,103,216	+				+0.6
4,103,216	+				+0.6
4,103,216	+				-1.5
4,103,217	-				+0.6
4,103,217	-				+0.8
4,103,217	-				+1.6
4,103,217	-				-1.2
4,103,217	-				-2.1
4,103,222	+				+0.7
4,103,222	+				+0.8
4,103,222	+				+0.2
4,103,222	+				-0.1
4,103,222	+				+0.4
4,103,222	+				+1.2
4,103,222	+				+0.7
4,103,223	-				+1.1
4,103,223	-				-0.3
4,103,223	-				-1.0
4,103,223	-				+1.0
4,103,226	+				-0.6
4,103,226	+				-0.3
4,103,226	+				+1.0
4,103,226	+				-2.7
4,103,226	+				+1.0
4,103,227	-				+1.1
4,103,227	-				-0.6
4,103,270	+				+0.9
4,103,271	-				-2.0
4,103,283	+				-2.1
4,103,283	+				-0.4
4,103,283	+				-0.4
4,103,283	+				-1.0
4,103,284	-				-2.9
4,103,284	-				+0.7
4,103,284	-				-1.3
4,103,284	-				+1.2
4,103,284	-				+1.1
4,103,296	+				-0.5
4,103,307	+		EFB2_03917	0.11	-2.5
4,103,307	+		EFB2_03917	0.11	-0.1
4,103,307	+		EFB2_03917	0.11	+1.7
4,103,307	+		EFB2_03917	0.11	+0.2
4,103,307	+		EFB2_03917	0.11	-0.3
4,103,308	-		EFB2_03917	0.11	-1.8
4,103,331	+		EFB2_03917	0.14	+0.4
4,103,364	+		EFB2_03917	0.19	-1.9
4,103,364	+		EFB2_03917	0.19	+1.4
4,103,364	+		EFB2_03917	0.19	+0.9
4,103,364	+		EFB2_03917	0.19	-3.9
4,103,364	+		EFB2_03917	0.19	+0.7
4,103,364	+		EFB2_03917	0.19	-2.0
4,103,364	+		EFB2_03917	0.19	+2.2
4,103,365	-		EFB2_03917	0.19	+0.9
4,103,365	-		EFB2_03917	0.19	-0.2
4,103,365	-		EFB2_03917	0.19	-1.6
4,103,365	-		EFB2_03917	0.19	-2.5
4,103,366	+		EFB2_03917	0.19	+1.0
4,103,366	+		EFB2_03917	0.19	+2.2
4,103,366	+		EFB2_03917	0.19	-0.7
4,103,366	+		EFB2_03917	0.19	+1.6
4,103,367	-		EFB2_03917	0.19	-0.7
4,103,367	-		EFB2_03917	0.19	-1.2
4,103,367	-		EFB2_03917	0.19	-0.2
4,103,367	-		EFB2_03917	0.19	+0.6
4,103,426	+		EFB2_03917	0.27	-2.4
4,103,426	+		EFB2_03917	0.27	+0.9
4,103,427	-		EFB2_03917	0.27	-1.3
4,103,427	-		EFB2_03917	0.27	+1.7
4,103,427	-		EFB2_03917	0.27	+0.7
4,103,427	-		EFB2_03917	0.27	-0.2
4,103,427	-		EFB2_03917	0.27	-0.2
4,103,427	-		EFB2_03917	0.27	+1.0
4,103,444	+		EFB2_03917	0.29	-0.2
4,103,444	+		EFB2_03917	0.29	+1.1
4,103,444	+		EFB2_03917	0.29	-0.4
4,103,444	+		EFB2_03917	0.29	-1.9
4,103,445	-		EFB2_03917	0.29	-2.3
4,103,445	-		EFB2_03917	0.29	+0.4
4,103,445	-		EFB2_03917	0.29	+1.2
4,103,536	+		EFB2_03917	0.41	+0.2
4,103,536	+		EFB2_03917	0.41	+0.2
4,103,536	+		EFB2_03917	0.41	-2.1
4,103,536	+		EFB2_03917	0.41	+0.1
4,103,536	+		EFB2_03917	0.41	+0.9
4,103,536	+		EFB2_03917	0.41	+0.6
4,103,536	+		EFB2_03917	0.41	+0.6
4,103,537	-		EFB2_03917	0.41	+0.4
4,103,537	-		EFB2_03917	0.41	-0.3
4,103,537	-		EFB2_03917	0.41	+0.2
4,103,537	-		EFB2_03917	0.41	+2.5
4,103,537	-		EFB2_03917	0.41	-0.8
4,103,537	-		EFB2_03917	0.41	+0.1
4,103,537	-		EFB2_03917	0.41	+0.1
4,103,537	-		EFB2_03917	0.41	+0.5
4,103,537	-		EFB2_03917	0.41	+1.7
4,103,561	-		EFB2_03917	0.44	-0.7
4,103,573	-		EFB2_03917	0.46	+1.4
4,103,628	+		EFB2_03917	0.53	-1.3
4,103,629	-		EFB2_03917	0.53	+1.0
4,103,666	+		EFB2_03917	0.58	+0.6
4,103,666	+		EFB2_03917	0.58	+0.9
4,103,666	+		EFB2_03917	0.58	-1.0
4,103,667	-		EFB2_03917	0.58	-1.1
4,103,667	-		EFB2_03917	0.58	+2.2
4,103,676	+		EFB2_03917	0.59	+0.1
4,103,676	+		EFB2_03917	0.59	-0.1
4,103,677	-		EFB2_03917	0.59	+0.7
4,103,718	+		EFB2_03917	0.64	-0.3
4,103,719	-		EFB2_03917	0.65	-3.4
4,103,721	+		EFB2_03917	0.65	+2.5
4,103,721	+		EFB2_03917	0.65	+0.1
4,103,721	+		EFB2_03917	0.65	-1.1
4,103,721	+		EFB2_03917	0.65	-1.2
4,103,722	-		EFB2_03917	0.65	+0.7
4,103,722	-		EFB2_03917	0.65	+1.2
4,103,765	+		EFB2_03917	0.71	-2.9
4,103,765	+		EFB2_03917	0.71	+0.2
4,103,765	+		EFB2_03917	0.71	-0.8
4,103,766	-		EFB2_03917	0.71	-0.2
4,103,803	+		EFB2_03917	0.75	-2.0
4,103,819	+		EFB2_03917	0.78	+0.2
4,103,819	+		EFB2_03917	0.78	+1.0
4,103,819	+		EFB2_03917	0.78	-0.2
4,103,819	+		EFB2_03917	0.78	-1.3
4,103,819	+		EFB2_03917	0.78	-0.4
4,103,819	+		EFB2_03917	0.78	+0.8
4,103,819	+		EFB2_03917	0.78	+1.4
4,103,819	+		EFB2_03917	0.78	-1.1
4,103,819	+		EFB2_03917	0.78	-0.9
4,103,819	+		EFB2_03917	0.78	+1.0
4,103,819	+		EFB2_03917	0.78	-1.7
4,103,820	-		EFB2_03917	0.78	+0.5
4,103,820	-		EFB2_03917	0.78	+0.1
4,103,820	-		EFB2_03917	0.78	-1.5
4,103,820	-		EFB2_03917	0.78	-0.3
4,103,835	+		EFB2_03917	0.80	-0.1
4,103,845	-		EFB2_03917	0.81	+0.1
4,103,845	-		EFB2_03917	0.81	-0.9
4,103,871	+		EFB2_03917	0.84	+1.3
4,103,871	+		EFB2_03917	0.84	+0.4
4,103,871	+		EFB2_03917	0.84	+0.8
4,103,872	-		EFB2_03917	0.84	-0.3
4,103,872	-		EFB2_03917	0.84	+1.9
4,103,872	-		EFB2_03917	0.84	-1.3
4,103,872	-		EFB2_03917	0.84	-1.5
4,103,874	+		EFB2_03917	0.85	-0.2
4,103,874	+		EFB2_03917	0.85	+1.7
4,103,874	+		EFB2_03917	0.85	-0.1
4,103,874	+		EFB2_03917	0.85	-0.9
4,103,874	+		EFB2_03917	0.85	-1.3
4,103,875	-		EFB2_03917	0.85	+0.4
4,103,875	-		EFB2_03917	0.85	+1.3
4,103,875	-		EFB2_03917	0.85	-0.0
4,103,875	-		EFB2_03917	0.85	+1.5
4,103,875	-		EFB2_03917	0.85	+0.5
4,103,875	-		EFB2_03917	0.85	+0.2
4,103,879	+		EFB2_03917	0.85	-1.1
4,103,879	+		EFB2_03917	0.85	+0.4
4,103,879	+		EFB2_03917	0.85	-1.7
4,103,879	+		EFB2_03917	0.85	+0.4
4,103,879	+		EFB2_03917	0.85	+0.3
4,103,880	-		EFB2_03917	0.85	+1.3
4,103,880	-		EFB2_03917	0.85	-0.1
4,103,880	-		EFB2_03917	0.85	+0.0
4,103,880	-		EFB2_03917	0.85	-1.4
4,103,880	-		EFB2_03917	0.85	+1.2
4,103,880	-		EFB2_03917	0.85	-0.5
4,103,880	-		EFB2_03917	0.85	-0.7
4,103,925	+				+0.0
4,103,925	+				-3.0
4,103,925	+				-2.6
4,103,926	-				-3.0
4,103,926	-				-0.0
4,103,926	-				+0.9
4,103,926	-				+0.1
4,103,931	+				-0.1
4,103,931	+				-0.2
4,103,931	+				+0.4
4,103,931	+				+0.0
4,103,931	+				-0.2
4,103,932	-				-0.0
4,103,932	-				-1.0
4,103,932	-				-0.0
4,103,966	-				+1.4
4,104,048	-				-0.0
4,104,056	+				+0.1
4,104,057	-				-0.4
4,104,062	+				+0.5
4,104,062	+				+0.8
4,104,062	+				-0.4
4,104,062	+				+2.4
4,104,062	+				-1.3
4,104,063	-				+1.0
4,104,063	-				-3.4
4,104,063	-				-1.8
4,104,063	-				+2.4
4,104,063	-				+0.5
4,104,063	-				-0.2
4,104,063	-				+1.0
4,104,063	-				+2.8
4,104,063	-				+0.4
4,104,063	-				+0.2
4,104,063	-				-0.2
4,104,063	-				-1.7
4,104,066	+				-1.4
4,104,066	+				+1.2
4,104,066	+				-1.3
4,104,066	+				-0.6
4,104,066	+				-0.4
4,104,066	+				+0.7
4,104,066	+				-1.9
4,104,066	+				+1.1
4,104,066	+				-2.9
4,104,066	+				-0.1
4,104,066	+				+0.8
4,104,067	-				-0.4
4,104,067	-				+0.5
4,104,067	-				+0.4
4,104,067	-				-0.4
4,104,067	-				+0.7
4,104,067	-				+0.8
4,104,067	-				+3.3
4,104,067	-				+1.0
4,104,067	-				-0.1
4,104,067	-				+1.3
4,104,067	-				-0.3
4,104,067	-				-0.4
4,104,067	-				+2.2
4,104,067	-				-2.9
4,104,067	-				-0.4
4,104,067	-				+1.7
4,104,067	-				+2.2
4,104,067	-				-1.1
4,104,067	-				+0.1
4,104,067	-				-0.7
4,104,069	+				-2.4
4,104,069	+				-2.3
4,104,069	+				+0.6
4,104,070	-				+0.2
4,104,070	-				-1.2
4,104,090	+		EFB2_03918	0.11	-2.9
4,104,090	+		EFB2_03918	0.11	-1.3
4,104,090	+		EFB2_03918	0.11	-2.4
4,104,090	+		EFB2_03918	0.11	-1.0
4,104,090	+		EFB2_03918	0.11	+1.2
4,104,091	-		EFB2_03918	0.11	-1.0
4,104,091	-		EFB2_03918	0.11	-2.4
4,104,091	-		EFB2_03918	0.11	-2.3
4,104,091	-		EFB2_03918	0.11	-2.0
4,104,091	-		EFB2_03918	0.11	-4.2
4,104,091	-		EFB2_03918	0.11	-2.8
4,104,091	-		EFB2_03918	0.11	+0.0
4,104,091	-		EFB2_03918	0.11	+0.2
4,104,098	+		EFB2_03918	0.12	+1.7
4,104,098	+		EFB2_03918	0.12	-0.2
4,104,098	+		EFB2_03918	0.12	-0.9
4,104,098	+		EFB2_03918	0.12	+0.6
4,104,098	+		EFB2_03918	0.12	-1.8
4,104,098	+		EFB2_03918	0.12	-2.0
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