Strain Fitness in Escherichia fergusonii Becca around EFB2_03628

Experiment: phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2)
3,794,454	+		EFB2_03626	0.83	+0.2
3,794,454	+		EFB2_03626	0.83	+0.7
3,794,454	+		EFB2_03626	0.83	+0.5
3,794,455	-		EFB2_03626	0.83	-1.9
3,794,455	-		EFB2_03626	0.83	-0.4
3,794,456	+		EFB2_03626	0.83	+0.4
3,794,456	+		EFB2_03626	0.83	-0.2
3,794,456	+		EFB2_03626	0.83	+0.4
3,794,456	+		EFB2_03626	0.83	-0.2
3,794,456	+		EFB2_03626	0.83	+1.2
3,794,526	+		EFB2_03626	0.86	-1.5
3,794,527	-		EFB2_03626	0.86	-0.2
3,794,527	-		EFB2_03626	0.86	+0.8
3,794,527	-		EFB2_03626	0.86	-0.7
3,794,527	-		EFB2_03626	0.86	-2.6
3,794,544	+		EFB2_03626	0.87	-0.2
3,794,544	+		EFB2_03626	0.87	+1.3
3,794,544	+		EFB2_03626	0.87	+0.1
3,794,544	+		EFB2_03626	0.87	+0.9
3,794,544	+		EFB2_03626	0.87	-1.9
3,794,545	-		EFB2_03626	0.87	-0.7
3,794,545	-		EFB2_03626	0.87	-0.5
3,794,558	+		EFB2_03626	0.88	+0.1
3,794,558	+		EFB2_03626	0.88	+1.5
3,794,558	+		EFB2_03626	0.88	+0.2
3,794,558	+		EFB2_03626	0.88	+0.9
3,794,633	+				+0.7
3,794,633	+				-0.5
3,794,633	+				+0.5
3,794,633	+				+0.6
3,794,633	+				+1.3
3,794,634	-				+0.2
3,794,634	-				-0.6
3,794,634	-				+0.5
3,794,634	-				+1.9
3,794,634	-				+1.5
3,794,712	+				+1.1
3,794,712	+				-0.0
3,794,712	+				+1.5
3,794,712	+				-0.4
3,794,712	+				+0.1
3,794,712	+				-1.4
3,794,712	+				+0.2
3,794,712	+				+0.1
3,794,712	+				+0.2
3,794,712	+				+0.2
3,794,712	+				+0.3
3,794,712	+				-0.2
3,794,713	-				+0.5
3,794,713	-				-2.4
3,794,713	-				+0.4
3,794,715	+				+2.5
3,794,715	+				+0.6
3,794,715	+				-0.7
3,794,715	+				-0.5
3,794,715	+				-0.8
3,794,715	+				+0.4
3,794,715	+				-0.6
3,794,715	+				-0.8
3,794,715	+				+3.6
3,794,715	+				+0.9
3,794,715	+				-1.5
3,794,715	+				+0.1
3,794,715	+				-1.5
3,794,715	+				+0.9
3,794,715	+				-0.2
3,794,715	+				+0.0
3,794,716	-				-0.7
3,794,716	-				+2.2
3,794,716	-				+1.9
3,794,716	-				+0.9
3,794,716	-				+0.2
3,794,716	-				-2.2
3,794,768	+				+1.9
3,794,768	+				+0.3
3,794,768	+				+0.4
3,794,768	+				-0.4
3,794,768	+				+0.3
3,794,768	+				-0.8
3,794,768	+				+0.1
3,794,769	-				-1.9
3,794,769	-				-1.9
3,794,769	-				+0.5
3,794,769	-				+1.5
3,794,769	-				+1.2
3,794,769	-				+0.5
3,794,769	-				-0.6
3,794,769	-				+1.1
3,794,772	-				+0.1
3,794,772	-				+0.6
3,794,772	-				+0.1
3,794,772	-				-1.1
3,794,799	+				-0.4
3,794,799	+				-0.5
3,794,799	+				-0.5
3,794,799	+				+0.7
3,794,799	+				-0.1
3,794,800	-				+1.0
3,794,800	-				-1.5
3,794,800	-				+0.6
3,794,800	-				+2.1
3,794,800	-				-1.8
3,794,881	+		EFB2_03627	0.15	+1.8
3,794,881	+		EFB2_03627	0.15	-0.8
3,794,881	+		EFB2_03627	0.15	+1.5
3,794,881	+		EFB2_03627	0.15	+0.8
3,794,881	+		EFB2_03627	0.15	+1.7
3,794,882	-		EFB2_03627	0.15	-3.0
3,794,882	-		EFB2_03627	0.15	+0.6
3,794,882	-		EFB2_03627	0.15	+1.6
3,794,882	-		EFB2_03627	0.15	+0.1
3,794,882	-		EFB2_03627	0.15	-1.9
3,794,882	-		EFB2_03627	0.15	-0.7
3,794,910	+		EFB2_03627	0.20	+0.6
3,794,910	+		EFB2_03627	0.20	-0.6
3,794,911	-		EFB2_03627	0.20	+0.1
3,794,922	+		EFB2_03627	0.22	-1.2
3,794,922	+		EFB2_03627	0.22	-0.5
3,794,922	+		EFB2_03627	0.22	-0.9
3,794,922	+		EFB2_03627	0.22	-1.9
3,794,922	+		EFB2_03627	0.22	+0.2
3,794,922	+		EFB2_03627	0.22	-0.7
3,794,922	+		EFB2_03627	0.22	+0.0
3,794,922	+		EFB2_03627	0.22	-1.6
3,794,923	-		EFB2_03627	0.22	-0.8
3,794,926	+		EFB2_03627	0.22	+1.5
3,794,926	+		EFB2_03627	0.22	-0.9
3,794,926	+		EFB2_03627	0.22	+1.1
3,794,926	+		EFB2_03627	0.22	-1.7
3,794,926	+		EFB2_03627	0.22	+0.0
3,794,926	+		EFB2_03627	0.22	-0.1
3,794,926	+		EFB2_03627	0.22	-2.2
3,794,926	+		EFB2_03627	0.22	+1.5
3,794,926	+		EFB2_03627	0.22	+1.2
3,794,926	+		EFB2_03627	0.22	+0.6
3,794,927	-		EFB2_03627	0.23	+0.5
3,794,927	-		EFB2_03627	0.23	-1.7
3,794,927	-		EFB2_03627	0.23	+2.1
3,794,927	-		EFB2_03627	0.23	+2.4
3,794,927	-		EFB2_03627	0.23	+1.4
3,794,927	-		EFB2_03627	0.23	+0.5
3,794,927	-		EFB2_03627	0.23	+0.7
3,794,927	-		EFB2_03627	0.23	-0.0
3,794,927	-		EFB2_03627	0.23	+2.6
3,794,927	-		EFB2_03627	0.23	-0.9
3,794,927	-		EFB2_03627	0.23	+0.8
3,794,927	-		EFB2_03627	0.23	-0.1
3,794,967	+		EFB2_03627	0.29	+0.7
3,794,967	+		EFB2_03627	0.29	-0.6
3,794,967	+		EFB2_03627	0.29	-0.2
3,795,034	+		EFB2_03627	0.40	-2.4
3,795,035	-		EFB2_03627	0.40	-0.9
3,795,035	-		EFB2_03627	0.40	-0.8
3,795,058	+		EFB2_03627	0.44	+0.2
3,795,058	+		EFB2_03627	0.44	+0.7
3,795,058	+		EFB2_03627	0.44	+0.8
3,795,059	-		EFB2_03627	0.44	+0.9
3,795,059	-		EFB2_03627	0.44	+0.7
3,795,059	-		EFB2_03627	0.44	+3.6
3,795,059	-		EFB2_03627	0.44	+0.1
3,795,059	-		EFB2_03627	0.44	-0.2
3,795,139	+		EFB2_03627	0.57	+0.1
3,795,139	+		EFB2_03627	0.57	-0.1
3,795,139	+		EFB2_03627	0.57	+1.5
3,795,139	+		EFB2_03627	0.57	-1.1
3,795,140	-		EFB2_03627	0.57	+0.7
3,795,140	-		EFB2_03627	0.57	+0.3
3,795,140	-		EFB2_03627	0.57	+2.1
3,795,140	-		EFB2_03627	0.57	-1.8
3,795,249	+		EFB2_03627	0.75	-1.2
3,795,249	+		EFB2_03627	0.75	+2.2
3,795,250	-		EFB2_03627	0.75	+1.6
3,795,250	-		EFB2_03627	0.75	-1.7
3,795,250	-		EFB2_03627	0.75	-0.1
3,795,303	+		EFB2_03627	0.84	+0.8
3,795,303	+		EFB2_03627	0.84	-0.0
3,795,304	-		EFB2_03627	0.84	+0.7
3,795,304	-		EFB2_03627	0.84	-0.8
3,795,368	+				+1.8
3,795,368	+				+0.3
3,795,368	+				-0.1
3,795,368	+				+0.6
3,795,368	+				-1.8
3,795,368	+				+1.0
3,795,368	+				+0.6
3,795,368	+				-1.7
3,795,368	+				-0.0
3,795,368	+				-0.4
3,795,369	-				-1.2
3,795,382	+				+1.3
3,795,382	+				+0.5
3,795,382	+				+0.7
3,795,382	+				-1.5
3,795,382	+				+0.3
3,795,383	-				+2.5
3,795,383	-				-1.2
3,795,383	-				-0.5
3,795,400	+				+2.4
3,795,400	+				-2.3
3,795,400	+				+0.1
3,795,400	+				+2.0
3,795,400	+				-4.0
3,795,400	+				+0.5
3,795,400	+				-0.8
3,795,400	+				+0.0
3,795,400	+				+1.4
3,795,400	+				-0.8
3,795,400	+				-0.7
3,795,400	+				+0.3
3,795,400	+				-0.4
3,795,400	+				-0.4
3,795,400	+				+0.7
3,795,400	+				-0.9
3,795,401	-				-0.2
3,795,401	-				+0.5
3,795,401	-				-1.8
3,795,401	-				+2.2
3,795,401	-				-1.5
3,795,401	-				-0.8
3,795,401	-				-0.1
3,795,401	-				-1.1
3,795,401	-				-2.2
3,795,401	-				-0.4
3,795,401	-				+1.3
3,795,401	-				+1.7
3,795,401	-				+0.6
3,795,401	-				+2.7
3,795,401	-				+0.8
3,795,401	-				+1.4
3,795,401	-				-1.0
3,795,401	-				+0.3
3,795,401	-				+1.1
3,795,413	+				-1.6
3,795,413	+				+0.4
3,795,413	+				-0.4
3,795,414	-				+0.5
3,795,414	-				-2.7
3,795,446	-		EFB2_03628	0.13	+1.1
3,795,446	-		EFB2_03628	0.13	+0.2
3,795,446	-		EFB2_03628	0.13	-1.1
3,795,453	+		EFB2_03628	0.15	+0.0
3,795,453	+		EFB2_03628	0.15	-1.2
3,795,453	+		EFB2_03628	0.15	-1.3
3,795,453	+		EFB2_03628	0.15	-1.7
3,795,454	-		EFB2_03628	0.16	-1.2
3,795,454	-		EFB2_03628	0.16	-1.1
3,795,454	-		EFB2_03628	0.16	-1.7
3,795,467	+		EFB2_03628	0.20	-0.9
3,795,467	+		EFB2_03628	0.20	+0.7
3,795,468	-		EFB2_03628	0.20	-1.6
3,795,535	+		EFB2_03628	0.40	+0.3
3,795,536	-		EFB2_03628	0.41	-0.6
3,795,568	+		EFB2_03628	0.50	+0.7
3,795,608	+		EFB2_03628	0.62	-3.8
3,795,609	-		EFB2_03628	0.63	+0.6
3,795,659	-		EFB2_03628	0.78	+1.1
3,795,659	-		EFB2_03628	0.78	-1.5
3,795,668	+		EFB2_03628	0.81	+1.7
3,795,679	+		EFB2_03628	0.84	+0.5
3,795,679	+		EFB2_03628	0.84	+0.8
3,795,679	+		EFB2_03628	0.84	-0.0
3,795,679	+		EFB2_03628	0.84	+1.1
3,795,680	-		EFB2_03628	0.84	-2.3
3,795,680	-		EFB2_03628	0.84	+1.4
3,795,680	-		EFB2_03628	0.84	-1.4
3,795,695	+		EFB2_03628	0.89	-0.3
3,795,695	+		EFB2_03628	0.89	+2.3
3,795,695	+		EFB2_03628	0.89	+0.8
3,795,695	+		EFB2_03628	0.89	+0.9
3,795,696	-		EFB2_03628	0.89	+3.1
3,795,696	-		EFB2_03628	0.89	+0.1
3,795,696	-		EFB2_03628	0.89	+1.2
3,795,711	+				+0.8
3,795,711	+				-2.6
3,795,711	+				+0.7
3,795,711	+				-0.8
3,795,711	+				-2.7
3,795,711	+				-0.6
3,795,711	+				-0.2
3,795,711	+				-0.0
3,795,711	+				-1.0
3,795,711	+				+0.8
3,795,712	-				+1.0
3,795,712	-				+0.4
3,795,712	-				+0.9
3,795,712	-				+0.2
3,795,712	-				-0.9
3,795,712	-				+0.3
3,795,712	-				-1.7
3,795,712	-				-3.3
3,795,712	-				+0.5
3,795,729	+				-1.3
3,795,730	-				+0.6
3,795,730	-				+2.4
3,795,730	-				+0.8
3,795,730	-				-1.0
3,795,730	-				-0.1
3,795,743	-				-1.1
3,795,751	+				+0.1
3,795,752	-				+0.1
3,795,752	-				+0.7
3,795,752	-				+0.7
3,795,752	-				+0.1
3,795,758	+				+1.0
3,795,758	+				-2.1
3,795,759	-				+2.4
3,795,759	-				-0.4
3,795,768	+				-0.4
3,795,768	+				-1.5
3,795,769	-				-2.0
3,795,859	+		EFB2_03629	0.13	-2.8
3,795,860	-		EFB2_03629	0.13	+1.3
3,795,863	+		EFB2_03629	0.13	+0.6
3,795,863	+		EFB2_03629	0.13	-0.4
3,795,864	-		EFB2_03629	0.14	+2.1
3,795,864	-		EFB2_03629	0.14	+0.6
3,795,864	-		EFB2_03629	0.14	-0.9
3,795,917	+		EFB2_03629	0.20	-1.1
3,795,917	+		EFB2_03629	0.20	+0.9
3,795,917	+		EFB2_03629	0.20	-0.1
3,795,917	+		EFB2_03629	0.20	+1.1
3,795,917	+		EFB2_03629	0.20	+1.9
3,795,917	+		EFB2_03629	0.20	+1.6
3,795,917	+		EFB2_03629	0.20	+0.6
3,795,917	+		EFB2_03629	0.20	-0.8
3,795,917	+		EFB2_03629	0.20	+4.0
3,795,917	+		EFB2_03629	0.20	+0.1
3,795,917	+		EFB2_03629	0.20	-0.3
3,795,918	-		EFB2_03629	0.20	-0.4
3,795,918	-		EFB2_03629	0.20	+1.9
3,795,918	-		EFB2_03629	0.20	-1.4
3,795,918	-		EFB2_03629	0.20	-0.1
3,795,918	-		EFB2_03629	0.20	-0.7
3,795,918	-		EFB2_03629	0.20	-0.4
3,795,918	-		EFB2_03629	0.20	+0.1
3,795,918	-		EFB2_03629	0.20	-1.4
3,795,918	-		EFB2_03629	0.20	+2.2
3,795,918	-		EFB2_03629	0.20	-2.7
3,795,918	-		EFB2_03629	0.20	+0.1
3,795,918	-		EFB2_03629	0.20	+2.3
3,795,918	-		EFB2_03629	0.20	+0.4
3,796,007	+		EFB2_03629	0.30	+1.2
3,796,007	+		EFB2_03629	0.30	-2.6
3,796,007	+		EFB2_03629	0.30	-0.5
3,796,007	+		EFB2_03629	0.30	-0.9
3,796,008	-		EFB2_03629	0.30	-2.9
3,796,008	-		EFB2_03629	0.30	-0.9
3,796,008	-		EFB2_03629	0.30	+1.0
3,796,008	-		EFB2_03629	0.30	+1.9
3,796,036	+		EFB2_03629	0.33	-0.3
3,796,036	+		EFB2_03629	0.33	+0.6
3,796,036	+		EFB2_03629	0.33	+0.5
3,796,036	+		EFB2_03629	0.33	+0.6
3,796,037	-		EFB2_03629	0.33	+0.5
3,796,100	+		EFB2_03629	0.40	-2.0
3,796,100	+		EFB2_03629	0.40	+1.2
3,796,100	+		EFB2_03629	0.40	+0.3
3,796,100	+		EFB2_03629	0.40	-2.9
3,796,100	+		EFB2_03629	0.40	-0.4
3,796,100	+		EFB2_03629	0.40	-0.3
3,796,100	+		EFB2_03629	0.40	+0.3
3,796,100	+		EFB2_03629	0.40	+1.1
3,796,101	-		EFB2_03629	0.40	+2.5
3,796,101	-		EFB2_03629	0.40	-2.0
3,796,101	-		EFB2_03629	0.40	+1.2
3,796,112	+		EFB2_03629	0.41	+0.3
3,796,112	+		EFB2_03629	0.41	-1.1
3,796,113	-		EFB2_03629	0.42	+1.2
3,796,114	+		EFB2_03629	0.42	+0.4
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