Strain Fitness in Escherichia fergusonii Becca around EFB2_01974

Experiment: phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2)
2,131,748	+				-1.4
2,131,890	+				+2.3
2,131,921	-				-1.3
2,132,008	-				+1.6
2,132,054	-				+0.4
2,132,087	-				-1.1
2,132,146	+				+1.4
2,132,146	+				+0.7
2,132,146	+				+1.4
2,132,147	-		EFB2_01973	0.10	+1.3
2,132,149	+		EFB2_01973	0.10	+0.9
2,132,149	+		EFB2_01973	0.10	-1.6
2,132,149	+		EFB2_01973	0.10	-2.4
2,132,176	+		EFB2_01973	0.15	-0.5
2,132,193	-		EFB2_01973	0.18	+0.6
2,132,243	+		EFB2_01973	0.27	+1.3
2,132,243	+		EFB2_01973	0.27	-1.2
2,132,257	+		EFB2_01973	0.30	-1.8
2,132,257	+		EFB2_01973	0.30	+0.8
2,132,257	+		EFB2_01973	0.30	+0.5
2,132,258	-		EFB2_01973	0.30	+1.5
2,132,258	-		EFB2_01973	0.30	+0.5
2,132,271	-		EFB2_01973	0.32	-0.2
2,132,280	+		EFB2_01973	0.34	-2.9
2,132,280	+		EFB2_01973	0.34	+0.9
2,132,280	+		EFB2_01973	0.34	-1.1
2,132,280	+		EFB2_01973	0.34	-2.1
2,132,280	+		EFB2_01973	0.34	-0.0
2,132,280	+		EFB2_01973	0.34	+0.8
2,132,281	-		EFB2_01973	0.34	+0.7
2,132,281	-		EFB2_01973	0.34	-1.0
2,132,300	+		EFB2_01973	0.37	+0.2
2,132,315	+		EFB2_01973	0.40	+1.5
2,132,316	-		EFB2_01973	0.40	+0.0
2,132,351	+		EFB2_01973	0.47	-0.8
2,132,351	+		EFB2_01973	0.47	+1.0
2,132,352	-		EFB2_01973	0.47	+0.7
2,132,352	-		EFB2_01973	0.47	+0.2
2,132,356	+		EFB2_01973	0.47	-3.2
2,132,356	+		EFB2_01973	0.47	-2.3
2,132,356	+		EFB2_01973	0.47	-1.0
2,132,356	+		EFB2_01973	0.47	-0.4
2,132,356	+		EFB2_01973	0.47	-0.3
2,132,356	+		EFB2_01973	0.47	+0.0
2,132,356	+		EFB2_01973	0.47	+0.2
2,132,357	-		EFB2_01973	0.48	-0.7
2,132,357	-		EFB2_01973	0.48	-3.8
2,132,357	-		EFB2_01973	0.48	-1.1
2,132,378	+		EFB2_01973	0.51	-0.5
2,132,402	+		EFB2_01973	0.56	-2.7
2,132,402	+		EFB2_01973	0.56	+2.8
2,132,402	+		EFB2_01973	0.56	+0.2
2,132,403	-		EFB2_01973	0.56	+0.3
2,132,403	-		EFB2_01973	0.56	+0.0
2,132,420	+		EFB2_01973	0.59	-0.1
2,132,421	-		EFB2_01973	0.59	+0.4
2,132,463	-		EFB2_01973	0.67	-1.3
2,132,469	+		EFB2_01973	0.68	+0.1
2,132,469	+		EFB2_01973	0.68	-1.5
2,132,469	+		EFB2_01973	0.68	-0.8
2,132,469	+		EFB2_01973	0.68	+0.3
2,132,469	+		EFB2_01973	0.68	+0.3
2,132,469	+		EFB2_01973	0.68	+0.7
2,132,469	+		EFB2_01973	0.68	+1.9
2,132,469	+		EFB2_01973	0.68	-1.5
2,132,469	+		EFB2_01973	0.68	+1.6
2,132,470	-		EFB2_01973	0.68	+0.7
2,132,470	-		EFB2_01973	0.68	-0.3
2,132,470	-		EFB2_01973	0.68	-0.2
2,132,470	-		EFB2_01973	0.68	+0.1
2,132,470	-		EFB2_01973	0.68	-0.1
2,132,470	-		EFB2_01973	0.68	+3.1
2,132,522	+		EFB2_01973	0.77	-0.7
2,132,529	+		EFB2_01973	0.78	-0.4
2,132,530	-		EFB2_01973	0.79	-1.3
2,132,534	+		EFB2_01973	0.79	-0.8
2,132,534	+		EFB2_01973	0.79	+0.1
2,132,534	+		EFB2_01973	0.79	-2.8
2,132,534	+		EFB2_01973	0.79	-2.6
2,132,534	+		EFB2_01973	0.79	+0.5
2,132,534	+		EFB2_01973	0.79	-0.5
2,132,534	+		EFB2_01973	0.79	+0.5
2,132,534	+		EFB2_01973	0.79	-1.2
2,132,534	+		EFB2_01973	0.79	-0.6
2,132,535	-		EFB2_01973	0.80	-2.3
2,132,535	-		EFB2_01973	0.80	+1.5
2,132,535	-		EFB2_01973	0.80	-0.1
2,132,535	-		EFB2_01973	0.80	+1.8
2,132,537	+		EFB2_01973	0.80	+1.5
2,132,537	+		EFB2_01973	0.80	-1.1
2,132,537	+		EFB2_01973	0.80	-0.6
2,132,538	-		EFB2_01973	0.80	-2.1
2,132,538	-		EFB2_01973	0.80	-2.3
2,132,538	-		EFB2_01973	0.80	+0.3
2,132,538	-		EFB2_01973	0.80	+0.3
2,132,538	-		EFB2_01973	0.80	+0.4
2,132,538	-		EFB2_01973	0.80	+0.9
2,132,558	+		EFB2_01973	0.84	-2.8
2,132,591	+		EFB2_01973	0.90	+0.0
2,132,592	-		EFB2_01973	0.90	+1.0
2,132,606	+				+0.1
2,132,606	+				-0.8
2,132,606	+				-1.0
2,132,606	+				-0.7
2,132,606	+				-1.1
2,132,606	+				+0.1
2,132,606	+				-1.3
2,132,606	+				-1.6
2,132,607	-				+2.1
2,132,607	-				-2.4
2,132,607	-				+0.7
2,132,607	-				+1.5
2,132,607	-				-1.9
2,132,607	-				-0.3
2,132,621	+				+1.3
2,132,621	+				-1.7
2,132,621	+				+0.8
2,132,622	-				-0.3
2,132,622	-				-2.3
2,132,622	-				-0.3
2,132,622	-				+1.3
2,132,622	-				-0.3
2,132,622	-				+3.2
2,132,624	+				-0.7
2,132,624	+				+0.3
2,132,624	+				+1.6
2,132,624	+				-0.2
2,132,624	+				+0.5
2,132,624	+				+0.5
2,132,624	+				-1.3
2,132,624	+				+2.2
2,132,624	+				+0.9
2,132,624	+				+0.3
2,132,624	+				+0.4
2,132,624	+				-3.0
2,132,624	+				-0.1
2,132,625	-				+1.2
2,132,625	-				-2.3
2,132,625	-				+0.3
2,132,625	-				+0.3
2,132,629	+				-1.3
2,132,629	+				-2.5
2,132,630	-				+1.2
2,132,630	-				-2.1
2,132,642	+				+0.6
2,132,642	+				-0.6
2,132,643	-				-1.7
2,132,646	+				+1.3
2,132,678	-				-0.2
2,132,696	+				+2.0
2,132,696	+				-0.6
2,132,696	+				+0.4
2,132,697	-				+0.0
2,132,697	-				-1.0
2,132,700	+				+0.7
2,132,700	+				+2.5
2,132,700	+				+2.2
2,132,700	+				-1.9
2,132,700	+				-2.0
2,132,700	+				+1.7
2,132,700	+				-1.7
2,132,700	+				-0.2
2,132,700	+				+1.2
2,132,701	-				-1.1
2,132,701	-				+1.7
2,132,701	-				+2.5
2,132,701	-				+0.0
2,132,721	+				-0.6
2,132,721	+				-1.1
2,132,721	+				+0.0
2,132,721	+				-0.4
2,132,722	-				-0.3
2,132,726	+				+3.5
2,132,747	+				+0.0
2,132,748	-				+1.3
2,132,748	-				+2.2
2,132,748	-				-1.0
2,132,751	+				+0.2
2,132,752	-				-0.7
2,132,772	+				+2.6
2,132,772	+				-0.1
2,132,773	-				+0.1
2,132,773	-				-1.8
2,132,787	+				-3.4
2,132,820	+				+2.6
2,132,820	+				-0.8
2,132,820	+				+0.0
2,132,820	+				-0.5
2,132,838	+				-2.0
2,132,866	+		EFB2_01974	0.11	+1.5
2,132,868	+		EFB2_01974	0.11	+0.3
2,132,868	+		EFB2_01974	0.11	-0.4
2,132,868	+		EFB2_01974	0.11	-0.3
2,132,869	-		EFB2_01974	0.11	+0.3
2,132,869	-		EFB2_01974	0.11	-0.8
2,132,869	-		EFB2_01974	0.11	-1.8
2,132,870	+		EFB2_01974	0.12	+0.3
2,132,874	+		EFB2_01974	0.12	-1.8
2,132,875	-		EFB2_01974	0.12	-1.5
2,132,882	-		EFB2_01974	0.12	-0.3
2,132,922	+		EFB2_01974	0.15	-0.2
2,132,922	+		EFB2_01974	0.15	+2.3
2,132,971	+		EFB2_01974	0.18	-0.5
2,132,971	+		EFB2_01974	0.18	+2.1
2,132,972	-		EFB2_01974	0.19	+0.7
2,132,972	-		EFB2_01974	0.19	+0.7
2,132,972	-		EFB2_01974	0.19	-1.8
2,132,981	+		EFB2_01974	0.19	+0.8
2,132,981	+		EFB2_01974	0.19	+1.5
2,132,981	+		EFB2_01974	0.19	-2.4
2,132,981	+		EFB2_01974	0.19	-2.7
2,132,982	-		EFB2_01974	0.19	+0.1
2,132,982	-		EFB2_01974	0.19	-1.5
2,132,982	-		EFB2_01974	0.19	+0.6
2,132,985	+		EFB2_01974	0.19	-2.8
2,132,985	+		EFB2_01974	0.19	+1.8
2,132,985	+		EFB2_01974	0.19	-2.0
2,132,985	+		EFB2_01974	0.19	+0.5
2,132,985	+		EFB2_01974	0.19	-0.4
2,132,985	+		EFB2_01974	0.19	+2.0
2,132,985	+		EFB2_01974	0.19	-0.1
2,132,985	+		EFB2_01974	0.19	-1.5
2,132,986	-		EFB2_01974	0.19	+0.3
2,132,986	-		EFB2_01974	0.19	-1.1
2,132,986	-		EFB2_01974	0.19	-1.8
2,132,986	-		EFB2_01974	0.19	+0.3
2,132,999	+		EFB2_01974	0.20	+0.8
2,132,999	+		EFB2_01974	0.20	+0.2
2,132,999	+		EFB2_01974	0.20	+0.1
2,133,000	-		EFB2_01974	0.20	-0.8
2,133,000	-		EFB2_01974	0.20	+1.1
2,133,000	-		EFB2_01974	0.20	+1.2
2,133,000	-		EFB2_01974	0.20	-1.6
2,133,000	-		EFB2_01974	0.20	+1.7
2,133,005	+		EFB2_01974	0.21	+4.6
2,133,005	+		EFB2_01974	0.21	-2.2
2,133,005	+		EFB2_01974	0.21	-1.4
2,133,005	+		EFB2_01974	0.21	-1.1
2,133,006	-		EFB2_01974	0.21	+1.8
2,133,006	-		EFB2_01974	0.21	-3.1
2,133,006	-		EFB2_01974	0.21	+1.5
2,133,010	+		EFB2_01974	0.21	+0.2
2,133,011	-		EFB2_01974	0.21	-3.5
2,133,011	-		EFB2_01974	0.21	-0.7
2,133,011	-		EFB2_01974	0.21	+2.8
2,133,012	+		EFB2_01974	0.21	+0.7
2,133,012	+		EFB2_01974	0.21	+0.4
2,133,012	+		EFB2_01974	0.21	-0.3
2,133,012	+		EFB2_01974	0.21	+0.5
2,133,013	-		EFB2_01974	0.21	+2.1
2,133,013	-		EFB2_01974	0.21	-0.6
2,133,013	-		EFB2_01974	0.21	+0.3
2,133,013	-		EFB2_01974	0.21	+1.2
2,133,013	-		EFB2_01974	0.21	+1.1
2,133,040	+		EFB2_01974	0.23	-1.0
2,133,040	+		EFB2_01974	0.23	-1.3
2,133,040	+		EFB2_01974	0.23	+0.4
2,133,040	+		EFB2_01974	0.23	+0.6
2,133,040	+		EFB2_01974	0.23	-0.8
2,133,041	-		EFB2_01974	0.23	-0.6
2,133,053	+		EFB2_01974	0.24	-1.5
2,133,054	-		EFB2_01974	0.24	+0.9
2,133,079	+		EFB2_01974	0.26	+0.7
2,133,079	+		EFB2_01974	0.26	-2.1
2,133,079	+		EFB2_01974	0.26	+0.3
2,133,080	-		EFB2_01974	0.26	+2.3
2,133,080	-		EFB2_01974	0.26	+0.0
2,133,080	-		EFB2_01974	0.26	+0.9
2,133,080	-		EFB2_01974	0.26	-1.8
2,133,080	-		EFB2_01974	0.26	+2.5
2,133,080	-		EFB2_01974	0.26	+0.9
2,133,096	+		EFB2_01974	0.27	-0.7
2,133,096	+		EFB2_01974	0.27	+0.1
2,133,096	+		EFB2_01974	0.27	+1.3
2,133,096	+		EFB2_01974	0.27	-0.5
2,133,096	+		EFB2_01974	0.27	+0.8
2,133,096	+		EFB2_01974	0.27	+2.0
2,133,096	+		EFB2_01974	0.27	+1.2
2,133,096	+		EFB2_01974	0.27	+1.9
2,133,096	+		EFB2_01974	0.27	-1.3
2,133,096	+		EFB2_01974	0.27	+1.3
2,133,096	+		EFB2_01974	0.27	-0.5
2,133,096	+		EFB2_01974	0.27	-3.6
2,133,096	+		EFB2_01974	0.27	+1.5
2,133,097	-		EFB2_01974	0.27	+1.3
2,133,097	-		EFB2_01974	0.27	-3.7
2,133,097	-		EFB2_01974	0.27	-0.3
2,133,097	-		EFB2_01974	0.27	-0.7
2,133,097	-		EFB2_01974	0.27	-1.3
2,133,097	-		EFB2_01974	0.27	+0.6
2,133,097	-		EFB2_01974	0.27	-2.7
2,133,097	-		EFB2_01974	0.27	+1.1
2,133,097	-		EFB2_01974	0.27	+1.2
2,133,097	-		EFB2_01974	0.27	+1.3
2,133,097	-		EFB2_01974	0.27	-0.4
2,133,097	-		EFB2_01974	0.27	-0.6
2,133,097	-		EFB2_01974	0.27	+1.3
2,133,097	-		EFB2_01974	0.27	+1.1
2,133,097	-		EFB2_01974	0.27	-0.9
2,133,098	+		EFB2_01974	0.27	-0.1
2,133,098	+		EFB2_01974	0.27	+0.4
2,133,098	+		EFB2_01974	0.27	+0.7
2,133,098	+		EFB2_01974	0.27	-2.5
2,133,098	+		EFB2_01974	0.27	-0.7
2,133,098	+		EFB2_01974	0.27	+1.1
2,133,098	+		EFB2_01974	0.27	+0.0
2,133,099	-		EFB2_01974	0.27	+1.1
2,133,099	-		EFB2_01974	0.27	+0.9
2,133,099	-		EFB2_01974	0.27	+0.5
2,133,099	-		EFB2_01974	0.27	-2.8
2,133,099	-		EFB2_01974	0.27	+0.0
2,133,099	-		EFB2_01974	0.27	-0.4
2,133,099	-		EFB2_01974	0.27	-2.1
2,133,099	-		EFB2_01974	0.27	+1.2
2,133,132	+		EFB2_01974	0.29	+0.5
2,133,132	+		EFB2_01974	0.29	-0.3
2,133,206	+		EFB2_01974	0.34	-1.5
2,133,206	+		EFB2_01974	0.34	-1.5
2,133,207	-		EFB2_01974	0.35	+0.0
2,133,207	-		EFB2_01974	0.35	-1.0
2,133,207	-		EFB2_01974	0.35	+1.2
2,133,243	+		EFB2_01974	0.37	+1.1
2,133,243	+		EFB2_01974	0.37	+1.4
2,133,243	+		EFB2_01974	0.37	-2.8
2,133,244	-		EFB2_01974	0.37	-2.0
2,133,244	-		EFB2_01974	0.37	-1.8
2,133,244	-		EFB2_01974	0.37	-0.3
2,133,244	-		EFB2_01974	0.37	+1.5
2,133,244	-		EFB2_01974	0.37	-2.1
2,133,244	-		EFB2_01974	0.37	-1.3
2,133,246	+		EFB2_01974	0.37	-1.3
2,133,246	+		EFB2_01974	0.37	+1.2
2,133,247	-		EFB2_01974	0.37	-1.5
2,133,247	-		EFB2_01974	0.37	-2.0
2,133,247	-		EFB2_01974	0.37	-0.7
2,133,247	-		EFB2_01974	0.37	-0.3
2,133,247	-		EFB2_01974	0.37	-0.7
2,133,247	-		EFB2_01974	0.37	-2.2
2,133,247	-		EFB2_01974	0.37	-1.3
2,133,247	-		EFB2_01974	0.37	+3.7
2,133,250	+		EFB2_01974	0.38	-0.5
2,133,250	+		EFB2_01974	0.38	-0.3
2,133,250	+		EFB2_01974	0.38	-2.7
2,133,250	+		EFB2_01974	0.38	-2.7
2,133,250	+		EFB2_01974	0.38	+0.3
2,133,250	+		EFB2_01974	0.38	-0.5
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