Experiment: Galactomannan from guar 2.5 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_04226 and BACOVA_04227 are separated by 77 nucleotides BACOVA_04227 and BACOVA_04228 are separated by 19 nucleotides
BACOVA_04226: BACOVA_04226 - gliding motility-associated protein GldE, at 105,365 to 106,720
_04226
BACOVA_04227: BACOVA_04227 - single-strand binding family protein, at 106,798 to 107,349
_04227
BACOVA_04228: BACOVA_04228 - A/G-specific adenine glycosylase, at 107,369 to 108,418
_04228
Position (kb)
106
107
108 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 105.902 kb on - strand, within BACOVA_04226 at 105.907 kb on - strand, within BACOVA_04226 at 105.953 kb on - strand, within BACOVA_04226 at 105.977 kb on - strand, within BACOVA_04226 at 106.004 kb on - strand, within BACOVA_04226 at 106.224 kb on - strand, within BACOVA_04226 at 106.406 kb on - strand, within BACOVA_04226 at 106.506 kb on - strand, within BACOVA_04226 at 106.541 kb on - strand, within BACOVA_04226 at 106.750 kb on - strand at 106.788 kb on - strand at 106.796 kb on - strand at 106.832 kb on - strand at 107.335 kb on - strand at 107.341 kb on - strand at 107.364 kb on - strand at 107.364 kb on - strand at 107.373 kb on + strand at 107.384 kb on + strand at 107.424 kb on + strand at 107.425 kb on - strand at 107.425 kb on - strand at 107.486 kb on + strand, within BACOVA_04228 at 107.493 kb on - strand, within BACOVA_04228 at 107.500 kb on - strand, within BACOVA_04228 at 107.511 kb on + strand, within BACOVA_04228 at 107.512 kb on - strand, within BACOVA_04228 at 107.512 kb on - strand, within BACOVA_04228 at 107.544 kb on + strand, within BACOVA_04228 at 107.648 kb on + strand, within BACOVA_04228 at 107.648 kb on + strand, within BACOVA_04228 at 107.649 kb on - strand, within BACOVA_04228 at 107.680 kb on + strand, within BACOVA_04228 at 107.699 kb on - strand, within BACOVA_04228 at 107.702 kb on + strand, within BACOVA_04228 at 107.703 kb on - strand, within BACOVA_04228 at 107.704 kb on + strand, within BACOVA_04228 at 107.705 kb on - strand, within BACOVA_04228 at 107.730 kb on + strand, within BACOVA_04228 at 107.731 kb on - strand, within BACOVA_04228 at 107.863 kb on + strand, within BACOVA_04228 at 107.920 kb on + strand, within BACOVA_04228 at 107.987 kb on + strand, within BACOVA_04228 at 108.047 kb on - strand, within BACOVA_04228 at 108.052 kb on - strand, within BACOVA_04228 at 108.068 kb on - strand, within BACOVA_04228 at 108.184 kb on - strand, within BACOVA_04228 at 108.201 kb on + strand, within BACOVA_04228 at 108.242 kb on + strand, within BACOVA_04228 at 108.242 kb on + strand, within BACOVA_04228 at 108.262 kb on + strand, within BACOVA_04228 at 108.282 kb on + strand, within BACOVA_04228 at 108.282 kb on + strand, within BACOVA_04228 at 108.314 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Galactomannan from guar 2.5 mg/mL (C) remove 105,902 - BACOVA_04226 0.40 -1.2 105,907 - BACOVA_04226 0.40 -0.4 105,953 - BACOVA_04226 0.43 -3.1 105,977 - BACOVA_04226 0.45 -0.7 106,004 - BACOVA_04226 0.47 -0.7 106,224 - BACOVA_04226 0.63 -1.4 106,406 - BACOVA_04226 0.77 -1.1 106,506 - BACOVA_04226 0.84 -0.9 106,541 - BACOVA_04226 0.87 -0.5 106,750 - +0.8 106,788 - -0.9 106,796 - -0.3 106,832 - +0.1 107,335 - -1.7 107,341 - +0.6 107,364 - +0.4 107,364 - +1.6 107,373 + -1.3 107,384 + -0.8 107,424 + +0.7 107,425 - +0.1 107,425 - -1.0 107,486 + BACOVA_04228 0.11 -0.8 107,493 - BACOVA_04228 0.12 -0.7 107,500 - BACOVA_04228 0.12 -0.9 107,511 + BACOVA_04228 0.14 +0.4 107,512 - BACOVA_04228 0.14 +0.0 107,512 - BACOVA_04228 0.14 -0.4 107,544 + BACOVA_04228 0.17 +0.4 107,648 + BACOVA_04228 0.27 +0.8 107,648 + BACOVA_04228 0.27 +0.3 107,649 - BACOVA_04228 0.27 +0.2 107,680 + BACOVA_04228 0.30 -0.0 107,699 - BACOVA_04228 0.31 +0.3 107,702 + BACOVA_04228 0.32 +0.1 107,703 - BACOVA_04228 0.32 +0.4 107,704 + BACOVA_04228 0.32 -0.7 107,705 - BACOVA_04228 0.32 +0.3 107,730 + BACOVA_04228 0.34 -0.1 107,731 - BACOVA_04228 0.34 +0.3 107,863 + BACOVA_04228 0.47 -0.1 107,920 + BACOVA_04228 0.52 -0.4 107,987 + BACOVA_04228 0.59 -1.5 108,047 - BACOVA_04228 0.65 +0.3 108,052 - BACOVA_04228 0.65 -0.1 108,068 - BACOVA_04228 0.67 +0.2 108,184 - BACOVA_04228 0.78 +0.7 108,201 + BACOVA_04228 0.79 -0.2 108,242 + BACOVA_04228 0.83 -0.0 108,242 + BACOVA_04228 0.83 +1.3 108,262 + BACOVA_04228 0.85 -0.0 108,282 + BACOVA_04228 0.87 -0.5 108,282 + BACOVA_04228 0.87 -0.9 108,314 - +0.7
Or see this region's nucleotide sequence