Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_04061

Experiment: Galactomannan from guar 2.5 mg/mL (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_04059 and BACOVA_04060 overlap by 4 nucleotidesBACOVA_04060 and BACOVA_04061 are separated by 4 nucleotidesBACOVA_04061 and BACOVA_04062 are separated by 94 nucleotides BACOVA_04059: BACOVA_04059 - hypothetical protein, at 392,101 to 392,559 _04059 BACOVA_04060: BACOVA_04060 - acetyltransferase, GNAT family, at 392,556 to 393,092 _04060 BACOVA_04061: BACOVA_04061 - putative ACR, COG1678, at 393,097 to 393,687 _04061 BACOVA_04062: BACOVA_04062 - aminotransferase, class I/II, at 393,782 to 395,098 _04062 Position (kb) 393 394Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 392.226 kb on + strand, within BACOVA_04059at 392.242 kb on + strand, within BACOVA_04059at 392.344 kb on - strand, within BACOVA_04059at 392.402 kb on - strand, within BACOVA_04059at 392.406 kb on - strand, within BACOVA_04059at 392.409 kb on + strand, within BACOVA_04059at 392.410 kb on - strand, within BACOVA_04059at 392.434 kb on + strand, within BACOVA_04059at 392.434 kb on + strand, within BACOVA_04059at 392.622 kb on - strand, within BACOVA_04060at 392.624 kb on - strand, within BACOVA_04060at 392.691 kb on + strand, within BACOVA_04060at 392.708 kb on + strand, within BACOVA_04060at 392.708 kb on + strand, within BACOVA_04060at 392.708 kb on + strand, within BACOVA_04060at 392.709 kb on - strand, within BACOVA_04060at 392.749 kb on + strand, within BACOVA_04060at 392.750 kb on - strand, within BACOVA_04060at 392.784 kb on - strand, within BACOVA_04060at 392.792 kb on + strand, within BACOVA_04060at 392.792 kb on + strand, within BACOVA_04060at 392.801 kb on + strand, within BACOVA_04060at 392.804 kb on + strand, within BACOVA_04060at 392.805 kb on - strand, within BACOVA_04060at 392.944 kb on - strand, within BACOVA_04060at 392.944 kb on - strand, within BACOVA_04060at 392.963 kb on + strand, within BACOVA_04060at 393.084 kb on - strandat 393.108 kb on + strandat 393.151 kb on + strandat 393.151 kb on + strandat 393.152 kb on + strandat 393.178 kb on - strand, within BACOVA_04061at 393.203 kb on + strand, within BACOVA_04061at 393.204 kb on - strand, within BACOVA_04061at 393.253 kb on - strand, within BACOVA_04061at 393.256 kb on + strand, within BACOVA_04061at 393.326 kb on - strand, within BACOVA_04061at 393.326 kb on - strand, within BACOVA_04061at 393.330 kb on + strand, within BACOVA_04061at 393.333 kb on - strand, within BACOVA_04061at 393.366 kb on - strand, within BACOVA_04061at 393.399 kb on + strand, within BACOVA_04061at 393.400 kb on - strand, within BACOVA_04061at 393.406 kb on + strand, within BACOVA_04061at 393.407 kb on - strand, within BACOVA_04061at 393.425 kb on - strand, within BACOVA_04061at 393.442 kb on - strand, within BACOVA_04061at 393.476 kb on + strand, within BACOVA_04061at 393.502 kb on - strand, within BACOVA_04061at 393.601 kb on + strand, within BACOVA_04061at 393.602 kb on - strand, within BACOVA_04061at 393.663 kb on + strandat 393.663 kb on + strandat 393.681 kb on + strandat 393.694 kb on - strandat 393.694 kb on - strandat 393.694 kb on - strandat 393.716 kb on - strandat 393.716 kb on - strandat 393.747 kb on - strandat 393.759 kb on + strandat 393.759 kb on + strandat 393.760 kb on - strandat 393.770 kb on + strandat 393.771 kb on - strandat 393.771 kb on - strandat 393.771 kb on - strandat 393.810 kb on - strandat 393.838 kb on - strandat 393.863 kb on - strandat 393.895 kb on + strandat 393.903 kb on - strandat 393.903 kb on - strandat 393.927 kb on + strand, within BACOVA_04062at 394.023 kb on + strand, within BACOVA_04062at 394.023 kb on + strand, within BACOVA_04062at 394.024 kb on - strand, within BACOVA_04062at 394.083 kb on + strand, within BACOVA_04062at 394.083 kb on + strand, within BACOVA_04062at 394.086 kb on - strand, within BACOVA_04062at 394.108 kb on + strand, within BACOVA_04062at 394.268 kb on + strand, within BACOVA_04062at 394.298 kb on - strand, within BACOVA_04062at 394.344 kb on - strand, within BACOVA_04062at 394.344 kb on - strand, within BACOVA_04062at 394.348 kb on - strand, within BACOVA_04062at 394.348 kb on - strand, within BACOVA_04062at 394.358 kb on - strand, within BACOVA_04062at 394.403 kb on + strand, within BACOVA_04062at 394.404 kb on - strand, within BACOVA_04062at 394.554 kb on - strand, within BACOVA_04062at 394.556 kb on - strand, within BACOVA_04062at 394.572 kb on + strand, within BACOVA_04062

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Per-strain Table

Position Strand Gene LocusTag Fraction Galactomannan from guar 2.5 mg/mL (C)
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392,226 + BACOVA_04059 0.27 +0.6
392,242 + BACOVA_04059 0.31 +0.0
392,344 - BACOVA_04059 0.53 -1.0
392,402 - BACOVA_04059 0.66 -0.4
392,406 - BACOVA_04059 0.66 -0.6
392,409 + BACOVA_04059 0.67 -0.8
392,410 - BACOVA_04059 0.67 -2.1
392,434 + BACOVA_04059 0.73 +0.6
392,434 + BACOVA_04059 0.73 +0.4
392,622 - BACOVA_04060 0.12 -1.0
392,624 - BACOVA_04060 0.13 -1.7
392,691 + BACOVA_04060 0.25 -1.3
392,708 + BACOVA_04060 0.28 -1.4
392,708 + BACOVA_04060 0.28 -0.4
392,708 + BACOVA_04060 0.28 -2.6
392,709 - BACOVA_04060 0.28 -0.6
392,749 + BACOVA_04060 0.36 -1.0
392,750 - BACOVA_04060 0.36 -0.6
392,784 - BACOVA_04060 0.42 +0.2
392,792 + BACOVA_04060 0.44 -0.8
392,792 + BACOVA_04060 0.44 -0.4
392,801 + BACOVA_04060 0.46 -0.6
392,804 + BACOVA_04060 0.46 -0.9
392,805 - BACOVA_04060 0.46 -0.8
392,944 - BACOVA_04060 0.72 -1.4
392,944 - BACOVA_04060 0.72 -0.8
392,963 + BACOVA_04060 0.76 -0.8
393,084 - -3.3
393,108 + -0.5
393,151 + +0.1
393,151 + -0.7
393,152 + -0.4
393,178 - BACOVA_04061 0.14 -1.6
393,203 + BACOVA_04061 0.18 -0.8
393,204 - BACOVA_04061 0.18 +0.7
393,253 - BACOVA_04061 0.26 -0.1
393,256 + BACOVA_04061 0.27 -1.0
393,326 - BACOVA_04061 0.39 -0.3
393,326 - BACOVA_04061 0.39 +0.9
393,330 + BACOVA_04061 0.39 -0.0
393,333 - BACOVA_04061 0.40 -0.6
393,366 - BACOVA_04061 0.46 -0.8
393,399 + BACOVA_04061 0.51 -0.6
393,400 - BACOVA_04061 0.51 -1.1
393,406 + BACOVA_04061 0.52 +0.1
393,407 - BACOVA_04061 0.52 +1.2
393,425 - BACOVA_04061 0.55 -0.0
393,442 - BACOVA_04061 0.58 -0.0
393,476 + BACOVA_04061 0.64 +0.2
393,502 - BACOVA_04061 0.69 -1.5
393,601 + BACOVA_04061 0.85 -0.5
393,602 - BACOVA_04061 0.85 -1.2
393,663 + +0.8
393,663 + -0.7
393,681 + -0.4
393,694 - +1.6
393,694 - +0.5
393,694 - -0.6
393,716 - +0.4
393,716 - -0.0
393,747 - +0.5
393,759 + -0.5
393,759 + +0.7
393,760 - +0.3
393,770 + -0.5
393,771 - -1.8
393,771 - +1.2
393,771 - +0.0
393,810 - -0.3
393,838 - +0.0
393,863 - -0.2
393,895 + -0.7
393,903 - -0.3
393,903 - +0.3
393,927 + BACOVA_04062 0.11 +1.3
394,023 + BACOVA_04062 0.18 +0.3
394,023 + BACOVA_04062 0.18 +0.7
394,024 - BACOVA_04062 0.18 +1.2
394,083 + BACOVA_04062 0.23 -1.8
394,083 + BACOVA_04062 0.23 -0.0
394,086 - BACOVA_04062 0.23 +0.1
394,108 + BACOVA_04062 0.25 +0.4
394,268 + BACOVA_04062 0.37 -1.2
394,298 - BACOVA_04062 0.39 +0.0
394,344 - BACOVA_04062 0.43 -3.3
394,344 - BACOVA_04062 0.43 -2.7
394,348 - BACOVA_04062 0.43 -0.4
394,348 - BACOVA_04062 0.43 +2.0
394,358 - BACOVA_04062 0.44 +0.2
394,403 + BACOVA_04062 0.47 -0.8
394,404 - BACOVA_04062 0.47 +0.2
394,554 - BACOVA_04062 0.59 -0.3
394,556 - BACOVA_04062 0.59 -1.0
394,572 + BACOVA_04062 0.60 +0.7

Or see this region's nucleotide sequence