Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_03102

Experiment: Galactomannan from guar 2.5 mg/mL (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_03101 and BACOVA_03102 are separated by 60 nucleotidesBACOVA_03102 and BACOVA_03103 are separated by 175 nucleotidesBACOVA_03103 and BACOVA_03104 are separated by 54 nucleotides BACOVA_03101: BACOVA_03101 - hypothetical protein, at 187,932 to 189,347 _03101 BACOVA_03102: BACOVA_03102 - hypothetical protein, at 189,408 to 190,910 _03102 BACOVA_03103: BACOVA_03103 - UMP kinase, at 191,086 to 191,796 _03103 BACOVA_03104: BACOVA_03104 - MATE efflux family protein, at 191,851 to 193,179 _03104 Position (kb) 189 190 191Strain fitness (log2 ratio) -2 -1 0 1 2at 188.417 kb on + strand, within BACOVA_03101at 188.417 kb on + strand, within BACOVA_03101at 188.418 kb on - strand, within BACOVA_03101at 188.504 kb on + strand, within BACOVA_03101at 188.505 kb on - strand, within BACOVA_03101at 188.516 kb on + strand, within BACOVA_03101at 188.517 kb on - strand, within BACOVA_03101at 188.556 kb on + strand, within BACOVA_03101at 188.591 kb on + strand, within BACOVA_03101at 188.665 kb on - strand, within BACOVA_03101at 188.735 kb on + strand, within BACOVA_03101at 188.735 kb on + strand, within BACOVA_03101at 188.782 kb on + strand, within BACOVA_03101at 188.796 kb on + strand, within BACOVA_03101at 188.799 kb on + strand, within BACOVA_03101at 188.801 kb on + strand, within BACOVA_03101at 188.801 kb on + strand, within BACOVA_03101at 188.802 kb on - strand, within BACOVA_03101at 188.802 kb on - strand, within BACOVA_03101at 188.829 kb on + strand, within BACOVA_03101at 188.830 kb on - strand, within BACOVA_03101at 188.848 kb on - strand, within BACOVA_03101at 188.851 kb on + strand, within BACOVA_03101at 188.876 kb on + strand, within BACOVA_03101at 188.914 kb on - strand, within BACOVA_03101at 188.914 kb on - strand, within BACOVA_03101at 188.931 kb on - strand, within BACOVA_03101at 188.937 kb on + strand, within BACOVA_03101at 188.938 kb on - strand, within BACOVA_03101at 188.938 kb on - strand, within BACOVA_03101at 188.938 kb on - strand, within BACOVA_03101at 188.938 kb on - strand, within BACOVA_03101at 188.940 kb on + strand, within BACOVA_03101at 188.941 kb on - strand, within BACOVA_03101at 189.222 kb on - strandat 189.235 kb on + strandat 189.236 kb on - strandat 189.239 kb on + strandat 189.239 kb on + strandat 189.246 kb on + strandat 189.247 kb on - strandat 189.247 kb on - strandat 189.255 kb on + strandat 189.256 kb on - strandat 189.275 kb on + strandat 189.291 kb on - strandat 189.335 kb on + strandat 189.342 kb on - strandat 189.355 kb on - strandat 189.371 kb on + strandat 189.373 kb on + strandat 189.395 kb on - strandat 189.395 kb on - strandat 189.401 kb on + strandat 189.485 kb on - strandat 189.534 kb on + strandat 189.535 kb on - strandat 189.535 kb on - strandat 189.536 kb on + strandat 189.536 kb on + strandat 189.537 kb on - strandat 189.557 kb on + strandat 189.558 kb on - strandat 189.558 kb on - strandat 189.569 kb on + strand, within BACOVA_03102at 189.602 kb on + strand, within BACOVA_03102at 189.604 kb on + strand, within BACOVA_03102at 189.604 kb on + strand, within BACOVA_03102at 189.605 kb on - strand, within BACOVA_03102at 189.605 kb on - strand, within BACOVA_03102at 189.632 kb on + strand, within BACOVA_03102at 189.656 kb on + strand, within BACOVA_03102at 189.701 kb on + strand, within BACOVA_03102at 189.702 kb on - strand, within BACOVA_03102at 189.756 kb on - strand, within BACOVA_03102at 189.766 kb on + strand, within BACOVA_03102at 189.848 kb on + strand, within BACOVA_03102at 189.858 kb on - strand, within BACOVA_03102at 189.905 kb on + strand, within BACOVA_03102at 189.906 kb on - strand, within BACOVA_03102at 189.990 kb on - strand, within BACOVA_03102at 190.068 kb on + strand, within BACOVA_03102at 190.070 kb on + strand, within BACOVA_03102at 190.070 kb on + strand, within BACOVA_03102at 190.071 kb on - strand, within BACOVA_03102at 190.116 kb on + strand, within BACOVA_03102at 190.116 kb on + strand, within BACOVA_03102at 190.173 kb on + strand, within BACOVA_03102at 190.174 kb on - strand, within BACOVA_03102at 190.212 kb on - strand, within BACOVA_03102at 190.271 kb on + strand, within BACOVA_03102at 190.290 kb on + strand, within BACOVA_03102at 190.290 kb on + strand, within BACOVA_03102at 190.291 kb on - strand, within BACOVA_03102at 190.310 kb on + strand, within BACOVA_03102at 190.310 kb on + strand, within BACOVA_03102at 190.352 kb on + strand, within BACOVA_03102at 190.388 kb on + strand, within BACOVA_03102at 190.388 kb on + strand, within BACOVA_03102at 190.418 kb on - strand, within BACOVA_03102at 190.424 kb on + strand, within BACOVA_03102at 190.424 kb on + strand, within BACOVA_03102at 190.467 kb on + strand, within BACOVA_03102at 190.512 kb on - strand, within BACOVA_03102at 190.524 kb on + strand, within BACOVA_03102at 190.524 kb on + strand, within BACOVA_03102at 190.527 kb on + strand, within BACOVA_03102at 190.527 kb on + strand, within BACOVA_03102at 190.530 kb on - strand, within BACOVA_03102at 190.530 kb on - strand, within BACOVA_03102at 190.692 kb on + strand, within BACOVA_03102at 190.762 kb on - strandat 190.802 kb on + strandat 190.805 kb on + strandat 190.806 kb on - strandat 190.806 kb on - strandat 190.815 kb on + strandat 190.820 kb on + strandat 190.820 kb on + strandat 190.827 kb on + strandat 190.896 kb on + strandat 190.904 kb on + strandat 190.905 kb on - strandat 190.908 kb on + strandat 190.908 kb on + strandat 190.908 kb on + strandat 190.927 kb on + strandat 190.928 kb on - strandat 190.928 kb on - strandat 190.929 kb on + strandat 190.933 kb on - strandat 190.987 kb on - strandat 191.024 kb on - strandat 191.035 kb on + strandat 191.036 kb on - strandat 191.043 kb on + strandat 191.043 kb on + strandat 191.044 kb on - strandat 191.048 kb on + strandat 191.879 kb on - strandat 191.903 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Galactomannan from guar 2.5 mg/mL (C)
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188,417 + BACOVA_03101 0.34 -1.5
188,417 + BACOVA_03101 0.34 -1.2
188,418 - BACOVA_03101 0.34 +0.3
188,504 + BACOVA_03101 0.40 -1.7
188,505 - BACOVA_03101 0.40 -0.9
188,516 + BACOVA_03101 0.41 +0.9
188,517 - BACOVA_03101 0.41 -0.1
188,556 + BACOVA_03101 0.44 -0.4
188,591 + BACOVA_03101 0.47 +0.4
188,665 - BACOVA_03101 0.52 +0.7
188,735 + BACOVA_03101 0.57 -0.8
188,735 + BACOVA_03101 0.57 -1.5
188,782 + BACOVA_03101 0.60 -0.3
188,796 + BACOVA_03101 0.61 -1.0
188,799 + BACOVA_03101 0.61 -0.4
188,801 + BACOVA_03101 0.61 -0.7
188,801 + BACOVA_03101 0.61 -0.2
188,802 - BACOVA_03101 0.61 +0.0
188,802 - BACOVA_03101 0.61 +0.1
188,829 + BACOVA_03101 0.63 +1.1
188,830 - BACOVA_03101 0.63 -1.6
188,848 - BACOVA_03101 0.65 +0.1
188,851 + BACOVA_03101 0.65 +0.4
188,876 + BACOVA_03101 0.67 -0.9
188,914 - BACOVA_03101 0.69 -0.7
188,914 - BACOVA_03101 0.69 +0.5
188,931 - BACOVA_03101 0.71 +0.1
188,937 + BACOVA_03101 0.71 -0.5
188,938 - BACOVA_03101 0.71 +0.6
188,938 - BACOVA_03101 0.71 +0.2
188,938 - BACOVA_03101 0.71 -1.5
188,938 - BACOVA_03101 0.71 -0.1
188,940 + BACOVA_03101 0.71 +2.6
188,941 - BACOVA_03101 0.71 -0.1
189,222 - -1.6
189,235 + -0.4
189,236 - -0.9
189,239 + -0.3
189,239 + +1.6
189,246 + -1.0
189,247 - -0.2
189,247 - -0.7
189,255 + -1.4
189,256 - -0.8
189,275 + +0.6
189,291 - -0.3
189,335 + +0.7
189,342 - -0.4
189,355 - -0.8
189,371 + -0.1
189,373 + -0.1
189,395 - +0.5
189,395 - +0.6
189,401 + +1.5
189,485 - -1.5
189,534 + -0.9
189,535 - +0.1
189,535 - -0.3
189,536 + -0.0
189,536 + -1.2
189,537 - -1.6
189,557 + +0.5
189,558 - +0.3
189,558 - +0.7
189,569 + BACOVA_03102 0.11 +0.0
189,602 + BACOVA_03102 0.13 -0.2
189,604 + BACOVA_03102 0.13 -0.5
189,604 + BACOVA_03102 0.13 -0.9
189,605 - BACOVA_03102 0.13 -1.5
189,605 - BACOVA_03102 0.13 +0.2
189,632 + BACOVA_03102 0.15 -0.7
189,656 + BACOVA_03102 0.17 +0.8
189,701 + BACOVA_03102 0.19 +0.0
189,702 - BACOVA_03102 0.20 +0.3
189,756 - BACOVA_03102 0.23 +0.2
189,766 + BACOVA_03102 0.24 +0.3
189,848 + BACOVA_03102 0.29 -0.7
189,858 - BACOVA_03102 0.30 +0.4
189,905 + BACOVA_03102 0.33 +0.9
189,906 - BACOVA_03102 0.33 -0.4
189,990 - BACOVA_03102 0.39 +0.2
190,068 + BACOVA_03102 0.44 +0.1
190,070 + BACOVA_03102 0.44 -2.0
190,070 + BACOVA_03102 0.44 +0.9
190,071 - BACOVA_03102 0.44 +0.0
190,116 + BACOVA_03102 0.47 +0.2
190,116 + BACOVA_03102 0.47 +0.6
190,173 + BACOVA_03102 0.51 -0.3
190,174 - BACOVA_03102 0.51 -0.6
190,212 - BACOVA_03102 0.53 +0.3
190,271 + BACOVA_03102 0.57 +0.6
190,290 + BACOVA_03102 0.59 +0.0
190,290 + BACOVA_03102 0.59 +0.2
190,291 - BACOVA_03102 0.59 -0.7
190,310 + BACOVA_03102 0.60 -0.3
190,310 + BACOVA_03102 0.60 -1.6
190,352 + BACOVA_03102 0.63 +0.2
190,388 + BACOVA_03102 0.65 +0.2
190,388 + BACOVA_03102 0.65 +1.0
190,418 - BACOVA_03102 0.67 -0.4
190,424 + BACOVA_03102 0.68 -1.7
190,424 + BACOVA_03102 0.68 -0.3
190,467 + BACOVA_03102 0.70 -0.9
190,512 - BACOVA_03102 0.73 +0.7
190,524 + BACOVA_03102 0.74 +2.2
190,524 + BACOVA_03102 0.74 -0.2
190,527 + BACOVA_03102 0.74 +0.0
190,527 + BACOVA_03102 0.74 -1.6
190,530 - BACOVA_03102 0.75 +0.1
190,530 - BACOVA_03102 0.75 -0.8
190,692 + BACOVA_03102 0.85 +0.7
190,762 - +0.3
190,802 + +0.0
190,805 + -1.0
190,806 - -0.1
190,806 - -0.1
190,815 + +0.1
190,820 + -1.0
190,820 + +0.5
190,827 + -0.5
190,896 + -1.2
190,904 + +0.3
190,905 - -0.9
190,908 + +0.5
190,908 + +0.2
190,908 + -1.1
190,927 + +0.3
190,928 - +0.3
190,928 - +0.7
190,929 + -0.1
190,933 - -0.4
190,987 - +0.3
191,024 - -0.1
191,035 + +0.5
191,036 - +1.1
191,043 + -1.3
191,043 + -0.9
191,044 - +0.2
191,048 + -0.2
191,879 - +0.1
191,903 - -0.7

Or see this region's nucleotide sequence