Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_03002

Experiment: Galactomannan from guar 2.5 mg/mL (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_02999 and BACOVA_03000 overlap by 71 nucleotidesBACOVA_03000 and BACOVA_03001 are separated by 199 nucleotidesBACOVA_03001 and BACOVA_03002 are separated by 223 nucleotidesBACOVA_03002 and BACOVA_03003 are separated by 76 nucleotides BACOVA_02999: BACOVA_02999 - hypothetical protein, at 72,646 to 73,155 _02999 BACOVA_03000: BACOVA_03000 - hypothetical protein, at 73,085 to 73,192 _03000 BACOVA_03001: BACOVA_03001 - tRNA-Met, at 73,392 to 73,465 _03001 BACOVA_03002: BACOVA_03002 - hypothetical protein, at 73,689 to 74,075 _03002 BACOVA_03003: BACOVA_03003 - permease, YjgP/YjgQ family, at 74,152 to 76,050 _03003 Position (kb) 73 74 75Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 72.693 kb on + strandat 72.693 kb on + strandat 72.694 kb on - strandat 72.705 kb on + strand, within BACOVA_02999at 72.706 kb on - strand, within BACOVA_02999at 72.723 kb on - strand, within BACOVA_02999at 72.742 kb on + strand, within BACOVA_02999at 72.743 kb on - strand, within BACOVA_02999at 72.745 kb on - strand, within BACOVA_02999at 72.753 kb on + strand, within BACOVA_02999at 72.754 kb on - strand, within BACOVA_02999at 72.754 kb on - strand, within BACOVA_02999at 72.864 kb on + strand, within BACOVA_02999at 72.882 kb on + strand, within BACOVA_02999at 72.900 kb on - strand, within BACOVA_02999at 72.912 kb on - strand, within BACOVA_02999at 72.915 kb on - strand, within BACOVA_02999at 72.922 kb on + strand, within BACOVA_02999at 72.923 kb on - strand, within BACOVA_02999at 72.923 kb on - strand, within BACOVA_02999at 72.924 kb on + strand, within BACOVA_02999at 72.924 kb on + strand, within BACOVA_02999at 72.925 kb on - strand, within BACOVA_02999at 72.925 kb on - strand, within BACOVA_02999at 72.925 kb on - strand, within BACOVA_02999at 72.925 kb on - strand, within BACOVA_02999at 72.925 kb on - strand, within BACOVA_02999at 72.927 kb on + strand, within BACOVA_02999at 72.928 kb on - strand, within BACOVA_02999at 72.928 kb on - strand, within BACOVA_02999at 72.928 kb on - strand, within BACOVA_02999at 72.934 kb on - strand, within BACOVA_02999at 72.992 kb on + strand, within BACOVA_02999at 72.993 kb on - strand, within BACOVA_02999at 72.996 kb on + strand, within BACOVA_02999at 72.997 kb on - strand, within BACOVA_02999at 72.997 kb on - strand, within BACOVA_02999at 73.045 kb on - strand, within BACOVA_02999at 73.105 kb on - strandat 73.117 kb on - strandat 73.143 kb on - strandat 73.161 kb on + strand, within BACOVA_03000at 73.161 kb on + strand, within BACOVA_03000at 73.162 kb on - strand, within BACOVA_03000at 73.162 kb on - strand, within BACOVA_03000at 73.171 kb on + strand, within BACOVA_03000at 73.191 kb on - strandat 73.287 kb on + strandat 73.293 kb on + strandat 73.294 kb on - strandat 73.297 kb on + strandat 73.309 kb on + strandat 73.314 kb on - strandat 73.314 kb on - strandat 73.572 kb on + strandat 73.573 kb on - strandat 73.614 kb on - strandat 73.636 kb on + strandat 73.637 kb on - strandat 73.757 kb on + strand, within BACOVA_03002at 73.758 kb on - strand, within BACOVA_03002at 73.758 kb on - strand, within BACOVA_03002at 73.763 kb on + strand, within BACOVA_03002at 73.763 kb on + strand, within BACOVA_03002at 73.819 kb on + strand, within BACOVA_03002at 73.823 kb on - strand, within BACOVA_03002at 73.950 kb on + strand, within BACOVA_03002at 73.951 kb on - strand, within BACOVA_03002at 73.951 kb on - strand, within BACOVA_03002at 73.951 kb on - strand, within BACOVA_03002at 73.971 kb on + strand, within BACOVA_03002at 73.972 kb on - strand, within BACOVA_03002at 73.972 kb on - strand, within BACOVA_03002at 73.972 kb on - strand, within BACOVA_03002at 74.012 kb on - strand, within BACOVA_03002

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Per-strain Table

Position Strand Gene LocusTag Fraction Galactomannan from guar 2.5 mg/mL (C)
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72,693 + -0.8
72,693 + +0.1
72,694 - -0.7
72,705 + BACOVA_02999 0.12 -0.1
72,706 - BACOVA_02999 0.12 -0.1
72,723 - BACOVA_02999 0.15 +0.1
72,742 + BACOVA_02999 0.19 +2.0
72,743 - BACOVA_02999 0.19 -1.6
72,745 - BACOVA_02999 0.19 +0.5
72,753 + BACOVA_02999 0.21 +0.4
72,754 - BACOVA_02999 0.21 +0.7
72,754 - BACOVA_02999 0.21 +0.4
72,864 + BACOVA_02999 0.43 +0.8
72,882 + BACOVA_02999 0.46 +0.7
72,900 - BACOVA_02999 0.50 +0.2
72,912 - BACOVA_02999 0.52 +0.1
72,915 - BACOVA_02999 0.53 +0.8
72,922 + BACOVA_02999 0.54 +1.2
72,923 - BACOVA_02999 0.54 -2.8
72,923 - BACOVA_02999 0.54 +0.6
72,924 + BACOVA_02999 0.55 +0.8
72,924 + BACOVA_02999 0.55 -0.0
72,925 - BACOVA_02999 0.55 +0.8
72,925 - BACOVA_02999 0.55 -0.1
72,925 - BACOVA_02999 0.55 -0.6
72,925 - BACOVA_02999 0.55 -0.3
72,925 - BACOVA_02999 0.55 +0.3
72,927 + BACOVA_02999 0.55 +0.3
72,928 - BACOVA_02999 0.55 -0.2
72,928 - BACOVA_02999 0.55 +0.8
72,928 - BACOVA_02999 0.55 +0.7
72,934 - BACOVA_02999 0.56 -0.4
72,992 + BACOVA_02999 0.68 +1.1
72,993 - BACOVA_02999 0.68 +0.9
72,996 + BACOVA_02999 0.69 -0.8
72,997 - BACOVA_02999 0.69 +1.0
72,997 - BACOVA_02999 0.69 -0.2
73,045 - BACOVA_02999 0.78 +0.3
73,105 - -0.1
73,117 - +0.4
73,143 - -1.3
73,161 + BACOVA_03000 0.70 +3.0
73,161 + BACOVA_03000 0.70 -0.3
73,162 - BACOVA_03000 0.71 +0.1
73,162 - BACOVA_03000 0.71 +1.8
73,171 + BACOVA_03000 0.80 -0.6
73,191 - +0.6
73,287 + +0.9
73,293 + -1.0
73,294 - -0.1
73,297 + -0.0
73,309 + -0.3
73,314 - +0.5
73,314 - -0.5
73,572 + -1.5
73,573 - -0.0
73,614 - +1.3
73,636 + +1.2
73,637 - -0.7
73,757 + BACOVA_03002 0.18 -0.8
73,758 - BACOVA_03002 0.18 -0.9
73,758 - BACOVA_03002 0.18 -0.8
73,763 + BACOVA_03002 0.19 +0.8
73,763 + BACOVA_03002 0.19 -0.6
73,819 + BACOVA_03002 0.34 -2.0
73,823 - BACOVA_03002 0.35 -1.7
73,950 + BACOVA_03002 0.67 -0.0
73,951 - BACOVA_03002 0.68 -2.5
73,951 - BACOVA_03002 0.68 -2.0
73,951 - BACOVA_03002 0.68 +0.1
73,971 + BACOVA_03002 0.73 -2.8
73,972 - BACOVA_03002 0.73 -1.8
73,972 - BACOVA_03002 0.73 -0.8
73,972 - BACOVA_03002 0.73 -1.0
74,012 - BACOVA_03002 0.83 +0.1

Or see this region's nucleotide sequence