Experiment: Galactomannan from guar 2.5 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_00671 and BACOVA_00672 overlap by 4 nucleotides BACOVA_00672 and BACOVA_00673 are separated by 39 nucleotides BACOVA_00673 and BACOVA_00674 are separated by 87 nucleotides
BACOVA_00671: BACOVA_00671 - NOL1/NOP2/sun family protein, at 31,645 to 33,159
_00671
BACOVA_00672: BACOVA_00672 - hypothetical protein, at 33,156 to 33,959
_00672
BACOVA_00673: BACOVA_00673 - hypothetical protein, at 33,999 to 34,157
_00673
BACOVA_00674: BACOVA_00674 - outer membrane efflux protein, at 34,245 to 35,429
_00674
Position (kb)
33
34
35 Strain fitness (log2 ratio)
-2
-1
0
1 at 33.033 kb on + strand at 33.034 kb on - strand at 33.034 kb on - strand at 33.113 kb on - strand at 33.113 kb on - strand at 33.113 kb on - strand at 33.131 kb on - strand at 33.145 kb on + strand at 33.145 kb on + strand at 33.145 kb on + strand at 33.157 kb on + strand at 33.256 kb on + strand, within BACOVA_00672 at 33.256 kb on + strand, within BACOVA_00672 at 33.257 kb on - strand, within BACOVA_00672 at 33.350 kb on - strand, within BACOVA_00672 at 33.364 kb on - strand, within BACOVA_00672 at 33.366 kb on + strand, within BACOVA_00672 at 33.367 kb on - strand, within BACOVA_00672 at 33.399 kb on - strand, within BACOVA_00672 at 33.420 kb on + strand, within BACOVA_00672 at 33.420 kb on + strand, within BACOVA_00672 at 33.604 kb on - strand, within BACOVA_00672 at 33.604 kb on - strand, within BACOVA_00672 at 33.616 kb on + strand, within BACOVA_00672 at 33.616 kb on + strand, within BACOVA_00672 at 33.617 kb on - strand, within BACOVA_00672 at 33.617 kb on - strand, within BACOVA_00672 at 33.624 kb on + strand, within BACOVA_00672 at 33.647 kb on + strand, within BACOVA_00672 at 33.667 kb on - strand, within BACOVA_00672 at 33.709 kb on + strand, within BACOVA_00672 at 33.710 kb on - strand, within BACOVA_00672 at 33.740 kb on - strand, within BACOVA_00672 at 33.740 kb on - strand, within BACOVA_00672 at 33.746 kb on + strand, within BACOVA_00672 at 33.747 kb on - strand, within BACOVA_00672 at 33.760 kb on - strand, within BACOVA_00672 at 33.823 kb on + strand, within BACOVA_00672 at 33.824 kb on - strand, within BACOVA_00672 at 33.824 kb on - strand, within BACOVA_00672 at 33.853 kb on + strand, within BACOVA_00672 at 33.873 kb on + strand, within BACOVA_00672 at 33.874 kb on - strand, within BACOVA_00672 at 33.933 kb on + strand at 33.933 kb on + strand at 33.934 kb on - strand at 33.941 kb on + strand at 33.954 kb on + strand at 33.963 kb on + strand at 33.986 kb on + strand at 33.987 kb on - strand at 34.015 kb on + strand, within BACOVA_00673 at 34.016 kb on - strand, within BACOVA_00673 at 34.020 kb on + strand, within BACOVA_00673 at 34.021 kb on - strand, within BACOVA_00673 at 34.033 kb on + strand, within BACOVA_00673 at 34.069 kb on + strand, within BACOVA_00673 at 34.070 kb on - strand, within BACOVA_00673 at 34.070 kb on - strand, within BACOVA_00673 at 34.107 kb on + strand, within BACOVA_00673 at 34.108 kb on - strand, within BACOVA_00673 at 34.109 kb on + strand, within BACOVA_00673 at 34.109 kb on + strand, within BACOVA_00673 at 34.110 kb on - strand, within BACOVA_00673 at 34.114 kb on - strand, within BACOVA_00673 at 34.114 kb on - strand, within BACOVA_00673 at 34.122 kb on - strand, within BACOVA_00673 at 34.122 kb on - strand, within BACOVA_00673 at 34.124 kb on + strand, within BACOVA_00673 at 34.125 kb on - strand, within BACOVA_00673 at 34.125 kb on - strand, within BACOVA_00673 at 34.160 kb on + strand at 34.161 kb on - strand at 34.167 kb on + strand at 34.167 kb on + strand at 34.168 kb on - strand at 34.168 kb on - strand at 34.168 kb on - strand at 34.168 kb on - strand at 34.171 kb on + strand at 34.177 kb on + strand at 34.177 kb on + strand at 34.177 kb on + strand at 34.178 kb on - strand at 34.179 kb on + strand at 34.181 kb on + strand at 34.193 kb on - strand at 34.199 kb on + strand at 34.200 kb on - strand at 34.224 kb on + strand at 34.224 kb on + strand at 34.225 kb on - strand at 34.235 kb on + strand at 34.235 kb on + strand at 34.235 kb on + strand at 34.239 kb on + strand at 34.240 kb on - strand at 34.242 kb on + strand at 34.243 kb on - strand at 34.243 kb on - strand at 34.246 kb on + strand at 34.247 kb on - strand at 34.249 kb on - strand at 34.249 kb on - strand at 34.249 kb on - strand at 34.286 kb on - strand at 34.335 kb on + strand at 34.348 kb on + strand at 34.428 kb on - strand, within BACOVA_00674 at 34.428 kb on - strand, within BACOVA_00674 at 34.430 kb on - strand, within BACOVA_00674 at 34.508 kb on + strand, within BACOVA_00674 at 34.599 kb on + strand, within BACOVA_00674 at 34.674 kb on - strand, within BACOVA_00674 at 34.716 kb on + strand, within BACOVA_00674 at 34.787 kb on + strand, within BACOVA_00674 at 34.976 kb on + strand, within BACOVA_00674 at 35.067 kb on + strand, within BACOVA_00674 at 35.139 kb on - strand, within BACOVA_00674
Per-strain Table
Position Strand Gene LocusTag Fraction Galactomannan from guar 2.5 mg/mL (C) remove 33,033 + +0.5 33,034 - +1.4 33,034 - +0.5 33,113 - +1.1 33,113 - +0.2 33,113 - +0.7 33,131 - -0.0 33,145 + +1.5 33,145 + +1.2 33,145 + +1.3 33,157 + -1.0 33,256 + BACOVA_00672 0.12 +0.1 33,256 + BACOVA_00672 0.12 +0.7 33,257 - BACOVA_00672 0.13 -0.2 33,350 - BACOVA_00672 0.24 -0.4 33,364 - BACOVA_00672 0.26 -1.6 33,366 + BACOVA_00672 0.26 -0.2 33,367 - BACOVA_00672 0.26 -0.7 33,399 - BACOVA_00672 0.30 -0.5 33,420 + BACOVA_00672 0.33 -0.5 33,420 + BACOVA_00672 0.33 -0.4 33,604 - BACOVA_00672 0.56 -0.0 33,604 - BACOVA_00672 0.56 -0.1 33,616 + BACOVA_00672 0.57 -0.5 33,616 + BACOVA_00672 0.57 +0.3 33,617 - BACOVA_00672 0.57 -0.9 33,617 - BACOVA_00672 0.57 +0.1 33,624 + BACOVA_00672 0.58 -1.7 33,647 + BACOVA_00672 0.61 +1.3 33,667 - BACOVA_00672 0.64 +0.5 33,709 + BACOVA_00672 0.69 -1.6 33,710 - BACOVA_00672 0.69 +0.5 33,740 - BACOVA_00672 0.73 -0.3 33,740 - BACOVA_00672 0.73 -0.5 33,746 + BACOVA_00672 0.73 +0.3 33,747 - BACOVA_00672 0.74 -0.4 33,760 - BACOVA_00672 0.75 +1.6 33,823 + BACOVA_00672 0.83 -0.1 33,824 - BACOVA_00672 0.83 +0.5 33,824 - BACOVA_00672 0.83 -0.2 33,853 + BACOVA_00672 0.87 -0.5 33,873 + BACOVA_00672 0.89 -0.7 33,874 - BACOVA_00672 0.89 +0.3 33,933 + +0.3 33,933 + -0.2 33,934 - +1.6 33,941 + -2.1 33,954 + -0.0 33,963 + -0.2 33,986 + +1.0 33,987 - +0.0 34,015 + BACOVA_00673 0.10 +0.6 34,016 - BACOVA_00673 0.11 +0.3 34,020 + BACOVA_00673 0.13 +0.1 34,021 - BACOVA_00673 0.14 -0.9 34,033 + BACOVA_00673 0.21 +1.0 34,069 + BACOVA_00673 0.44 -1.2 34,070 - BACOVA_00673 0.45 -0.8 34,070 - BACOVA_00673 0.45 +0.1 34,107 + BACOVA_00673 0.68 +0.2 34,108 - BACOVA_00673 0.69 -0.9 34,109 + BACOVA_00673 0.69 -0.6 34,109 + BACOVA_00673 0.69 -0.2 34,110 - BACOVA_00673 0.70 +0.6 34,114 - BACOVA_00673 0.72 -0.7 34,114 - BACOVA_00673 0.72 -0.2 34,122 - BACOVA_00673 0.77 -0.4 34,122 - BACOVA_00673 0.77 -0.3 34,124 + BACOVA_00673 0.79 +0.2 34,125 - BACOVA_00673 0.79 -0.7 34,125 - BACOVA_00673 0.79 +1.1 34,160 + -1.2 34,161 - +0.1 34,167 + +1.1 34,167 + +0.5 34,168 - -0.4 34,168 - +0.3 34,168 - -1.9 34,168 - -1.4 34,171 + +0.4 34,177 + -0.9 34,177 + +1.1 34,177 + -0.9 34,178 - -1.6 34,179 + +1.3 34,181 + +0.8 34,193 - -2.1 34,199 + -0.5 34,200 - -0.7 34,224 + -0.1 34,224 + +0.4 34,225 - -1.6 34,235 + -1.6 34,235 + +0.5 34,235 + -1.7 34,239 + +0.5 34,240 - -0.1 34,242 + +0.5 34,243 - -0.4 34,243 - +1.3 34,246 + +0.2 34,247 - -0.1 34,249 - +0.4 34,249 - +1.2 34,249 - -0.4 34,286 - +0.3 34,335 + -1.7 34,348 + -0.9 34,428 - BACOVA_00674 0.15 -1.2 34,428 - BACOVA_00674 0.15 -0.7 34,430 - BACOVA_00674 0.16 -0.3 34,508 + BACOVA_00674 0.22 -1.3 34,599 + BACOVA_00674 0.30 -1.2 34,674 - BACOVA_00674 0.36 -0.7 34,716 + BACOVA_00674 0.40 -0.9 34,787 + BACOVA_00674 0.46 -0.2 34,976 + BACOVA_00674 0.62 -0.4 35,067 + BACOVA_00674 0.69 -2.2 35,139 - BACOVA_00674 0.75 -0.7
Or see this region's nucleotide sequence