Strain Fitness in Rhodanobacter sp. FW510-T8 around OKGIIK_15480

Experiment: R2A_PIPES with Cobalt chloride 1024 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntwcaA and OKGIIK_15475 are separated by 66 nucleotidesOKGIIK_15475 and OKGIIK_15480 are separated by 16 nucleotidesOKGIIK_15480 and yobV are separated by 11 nucleotides OKGIIK_15470: wcaA - dolichol-phosphate mannosyltransferase, at 3,367,306 to 3,368,022 wcaA OKGIIK_15475: OKGIIK_15475 - DUF488 domain-containing protein, at 3,368,089 to 3,368,457 _15475 OKGIIK_15480: OKGIIK_15480 - Serine protease, at 3,368,474 to 3,369,412 _15480 OKGIIK_15485: yobV - transcriptional regulator, at 3,369,424 to 3,370,407 yobV Position (kb) 3368 3369 3370Strain fitness (log2 ratio) -3 -2 -1 0 1at 3368.054 kb on + strandat 3368.054 kb on + strandat 3368.054 kb on + strandat 3368.054 kb on + strandat 3368.054 kb on + strandat 3368.054 kb on + strandat 3368.054 kb on + strandat 3368.054 kb on + strandat 3368.055 kb on - strandat 3368.055 kb on - strandat 3368.055 kb on - strandat 3368.055 kb on - strandat 3368.055 kb on - strandat 3368.055 kb on - strandat 3368.055 kb on - strandat 3368.055 kb on - strandat 3368.055 kb on - strandat 3368.055 kb on - strandat 3368.113 kb on + strandat 3368.114 kb on - strandat 3368.114 kb on - strandat 3368.114 kb on - strandat 3368.114 kb on - strandat 3368.114 kb on - strandat 3368.204 kb on + strand, within OKGIIK_15475at 3368.204 kb on + strand, within OKGIIK_15475at 3368.204 kb on + strand, within OKGIIK_15475at 3368.204 kb on + strand, within OKGIIK_15475at 3368.204 kb on + strand, within OKGIIK_15475at 3368.204 kb on + strand, within OKGIIK_15475at 3368.205 kb on - strand, within OKGIIK_15475at 3368.205 kb on - strand, within OKGIIK_15475at 3368.205 kb on - strand, within OKGIIK_15475at 3368.205 kb on - strand, within OKGIIK_15475at 3368.205 kb on - strand, within OKGIIK_15475at 3368.205 kb on - strand, within OKGIIK_15475at 3368.291 kb on - strand, within OKGIIK_15475at 3368.291 kb on - strand, within OKGIIK_15475at 3368.291 kb on - strand, within OKGIIK_15475at 3368.420 kb on - strand, within OKGIIK_15475at 3368.420 kb on - strand, within OKGIIK_15475at 3368.420 kb on - strand, within OKGIIK_15475at 3368.420 kb on - strand, within OKGIIK_15475at 3368.445 kb on - strandat 3368.455 kb on + strandat 3368.456 kb on - strandat 3368.577 kb on + strand, within OKGIIK_15480at 3368.577 kb on + strand, within OKGIIK_15480at 3368.577 kb on + strand, within OKGIIK_15480at 3368.577 kb on + strand, within OKGIIK_15480at 3368.625 kb on + strand, within OKGIIK_15480at 3368.625 kb on + strand, within OKGIIK_15480at 3368.625 kb on + strand, within OKGIIK_15480at 3368.856 kb on + strand, within OKGIIK_15480at 3368.856 kb on + strand, within OKGIIK_15480at 3368.856 kb on + strand, within OKGIIK_15480at 3368.856 kb on + strand, within OKGIIK_15480at 3368.856 kb on + strand, within OKGIIK_15480at 3368.856 kb on + strand, within OKGIIK_15480at 3368.856 kb on + strand, within OKGIIK_15480at 3368.856 kb on + strand, within OKGIIK_15480at 3368.856 kb on + strand, within OKGIIK_15480at 3368.857 kb on - strand, within OKGIIK_15480at 3369.204 kb on + strand, within OKGIIK_15480at 3369.204 kb on + strand, within OKGIIK_15480at 3369.205 kb on - strand, within OKGIIK_15480at 3369.205 kb on - strand, within OKGIIK_15480

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A_PIPES with Cobalt chloride 1024 uM
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3,368,054 + +0.4
3,368,054 + +0.5
3,368,054 + -0.2
3,368,054 + -0.8
3,368,054 + +0.8
3,368,054 + -0.7
3,368,054 + +1.5
3,368,054 + -1.4
3,368,055 - -0.4
3,368,055 - -1.9
3,368,055 - -0.3
3,368,055 - -0.3
3,368,055 - +0.9
3,368,055 - -0.8
3,368,055 - -1.6
3,368,055 - +1.1
3,368,055 - +1.2
3,368,055 - +0.6
3,368,113 + -2.1
3,368,114 - -0.1
3,368,114 - +1.4
3,368,114 - -0.2
3,368,114 - -0.8
3,368,114 - -0.4
3,368,204 + OKGIIK_15475 0.31 -0.5
3,368,204 + OKGIIK_15475 0.31 -0.8
3,368,204 + OKGIIK_15475 0.31 +1.7
3,368,204 + OKGIIK_15475 0.31 -1.6
3,368,204 + OKGIIK_15475 0.31 +0.0
3,368,204 + OKGIIK_15475 0.31 +0.7
3,368,205 - OKGIIK_15475 0.31 -1.4
3,368,205 - OKGIIK_15475 0.31 +1.6
3,368,205 - OKGIIK_15475 0.31 -0.9
3,368,205 - OKGIIK_15475 0.31 -1.4
3,368,205 - OKGIIK_15475 0.31 -2.8
3,368,205 - OKGIIK_15475 0.31 -0.6
3,368,291 - OKGIIK_15475 0.55 -2.0
3,368,291 - OKGIIK_15475 0.55 -2.3
3,368,291 - OKGIIK_15475 0.55 +0.7
3,368,420 - OKGIIK_15475 0.90 -1.7
3,368,420 - OKGIIK_15475 0.90 +0.9
3,368,420 - OKGIIK_15475 0.90 +0.3
3,368,420 - OKGIIK_15475 0.90 +0.3
3,368,445 - -0.3
3,368,455 + +0.2
3,368,456 - +0.2
3,368,577 + OKGIIK_15480 0.11 -0.1
3,368,577 + OKGIIK_15480 0.11 -1.1
3,368,577 + OKGIIK_15480 0.11 +1.3
3,368,577 + OKGIIK_15480 0.11 +0.9
3,368,625 + OKGIIK_15480 0.16 -0.9
3,368,625 + OKGIIK_15480 0.16 -1.3
3,368,625 + OKGIIK_15480 0.16 -3.5
3,368,856 + OKGIIK_15480 0.41 -0.7
3,368,856 + OKGIIK_15480 0.41 +1.6
3,368,856 + OKGIIK_15480 0.41 -0.3
3,368,856 + OKGIIK_15480 0.41 -0.6
3,368,856 + OKGIIK_15480 0.41 -0.3
3,368,856 + OKGIIK_15480 0.41 +0.3
3,368,856 + OKGIIK_15480 0.41 -1.4
3,368,856 + OKGIIK_15480 0.41 +0.3
3,368,856 + OKGIIK_15480 0.41 -1.6
3,368,857 - OKGIIK_15480 0.41 -0.6
3,369,204 + OKGIIK_15480 0.78 -0.3
3,369,204 + OKGIIK_15480 0.78 -1.3
3,369,205 - OKGIIK_15480 0.78 -1.0
3,369,205 - OKGIIK_15480 0.78 -0.1

Or see this region's nucleotide sequence