Experiment: R2A_PIPES with Cobalt chloride 1024 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt wcaA and OKGIIK_15475 are separated by 66 nucleotides OKGIIK_15475 and OKGIIK_15480 are separated by 16 nucleotides OKGIIK_15480 and yobV are separated by 11 nucleotides
OKGIIK_15470: wcaA - dolichol-phosphate mannosyltransferase, at 3,367,306 to 3,368,022
wcaA
OKGIIK_15475: OKGIIK_15475 - DUF488 domain-containing protein, at 3,368,089 to 3,368,457
_15475
OKGIIK_15480: OKGIIK_15480 - Serine protease, at 3,368,474 to 3,369,412
_15480
OKGIIK_15485: yobV - transcriptional regulator, at 3,369,424 to 3,370,407
yobV
Position (kb)
3368
3369
3370 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 3368.054 kb on + strand at 3368.054 kb on + strand at 3368.054 kb on + strand at 3368.054 kb on + strand at 3368.054 kb on + strand at 3368.054 kb on + strand at 3368.054 kb on + strand at 3368.054 kb on + strand at 3368.055 kb on - strand at 3368.055 kb on - strand at 3368.055 kb on - strand at 3368.055 kb on - strand at 3368.055 kb on - strand at 3368.055 kb on - strand at 3368.055 kb on - strand at 3368.055 kb on - strand at 3368.055 kb on - strand at 3368.055 kb on - strand at 3368.113 kb on + strand at 3368.114 kb on - strand at 3368.114 kb on - strand at 3368.114 kb on - strand at 3368.114 kb on - strand at 3368.114 kb on - strand at 3368.204 kb on + strand, within OKGIIK_15475 at 3368.204 kb on + strand, within OKGIIK_15475 at 3368.204 kb on + strand, within OKGIIK_15475 at 3368.204 kb on + strand, within OKGIIK_15475 at 3368.204 kb on + strand, within OKGIIK_15475 at 3368.204 kb on + strand, within OKGIIK_15475 at 3368.205 kb on - strand, within OKGIIK_15475 at 3368.205 kb on - strand, within OKGIIK_15475 at 3368.205 kb on - strand, within OKGIIK_15475 at 3368.205 kb on - strand, within OKGIIK_15475 at 3368.205 kb on - strand, within OKGIIK_15475 at 3368.205 kb on - strand, within OKGIIK_15475 at 3368.291 kb on - strand, within OKGIIK_15475 at 3368.291 kb on - strand, within OKGIIK_15475 at 3368.291 kb on - strand, within OKGIIK_15475 at 3368.420 kb on - strand, within OKGIIK_15475 at 3368.420 kb on - strand, within OKGIIK_15475 at 3368.420 kb on - strand, within OKGIIK_15475 at 3368.420 kb on - strand, within OKGIIK_15475 at 3368.445 kb on - strand at 3368.455 kb on + strand at 3368.456 kb on - strand at 3368.577 kb on + strand, within OKGIIK_15480 at 3368.577 kb on + strand, within OKGIIK_15480 at 3368.577 kb on + strand, within OKGIIK_15480 at 3368.577 kb on + strand, within OKGIIK_15480 at 3368.625 kb on + strand, within OKGIIK_15480 at 3368.625 kb on + strand, within OKGIIK_15480 at 3368.625 kb on + strand, within OKGIIK_15480 at 3368.856 kb on + strand, within OKGIIK_15480 at 3368.856 kb on + strand, within OKGIIK_15480 at 3368.856 kb on + strand, within OKGIIK_15480 at 3368.856 kb on + strand, within OKGIIK_15480 at 3368.856 kb on + strand, within OKGIIK_15480 at 3368.856 kb on + strand, within OKGIIK_15480 at 3368.856 kb on + strand, within OKGIIK_15480 at 3368.856 kb on + strand, within OKGIIK_15480 at 3368.856 kb on + strand, within OKGIIK_15480 at 3368.857 kb on - strand, within OKGIIK_15480 at 3369.204 kb on + strand, within OKGIIK_15480 at 3369.204 kb on + strand, within OKGIIK_15480 at 3369.205 kb on - strand, within OKGIIK_15480 at 3369.205 kb on - strand, within OKGIIK_15480
Per-strain Table
Position Strand Gene LocusTag Fraction R2A_PIPES with Cobalt chloride 1024 uM remove 3,368,054 + +0.4 3,368,054 + +0.5 3,368,054 + -0.2 3,368,054 + -0.8 3,368,054 + +0.8 3,368,054 + -0.7 3,368,054 + +1.5 3,368,054 + -1.4 3,368,055 - -0.4 3,368,055 - -1.9 3,368,055 - -0.3 3,368,055 - -0.3 3,368,055 - +0.9 3,368,055 - -0.8 3,368,055 - -1.6 3,368,055 - +1.1 3,368,055 - +1.2 3,368,055 - +0.6 3,368,113 + -2.1 3,368,114 - -0.1 3,368,114 - +1.4 3,368,114 - -0.2 3,368,114 - -0.8 3,368,114 - -0.4 3,368,204 + OKGIIK_15475 0.31 -0.5 3,368,204 + OKGIIK_15475 0.31 -0.8 3,368,204 + OKGIIK_15475 0.31 +1.7 3,368,204 + OKGIIK_15475 0.31 -1.6 3,368,204 + OKGIIK_15475 0.31 +0.0 3,368,204 + OKGIIK_15475 0.31 +0.7 3,368,205 - OKGIIK_15475 0.31 -1.4 3,368,205 - OKGIIK_15475 0.31 +1.6 3,368,205 - OKGIIK_15475 0.31 -0.9 3,368,205 - OKGIIK_15475 0.31 -1.4 3,368,205 - OKGIIK_15475 0.31 -2.8 3,368,205 - OKGIIK_15475 0.31 -0.6 3,368,291 - OKGIIK_15475 0.55 -2.0 3,368,291 - OKGIIK_15475 0.55 -2.3 3,368,291 - OKGIIK_15475 0.55 +0.7 3,368,420 - OKGIIK_15475 0.90 -1.7 3,368,420 - OKGIIK_15475 0.90 +0.9 3,368,420 - OKGIIK_15475 0.90 +0.3 3,368,420 - OKGIIK_15475 0.90 +0.3 3,368,445 - -0.3 3,368,455 + +0.2 3,368,456 - +0.2 3,368,577 + OKGIIK_15480 0.11 -0.1 3,368,577 + OKGIIK_15480 0.11 -1.1 3,368,577 + OKGIIK_15480 0.11 +1.3 3,368,577 + OKGIIK_15480 0.11 +0.9 3,368,625 + OKGIIK_15480 0.16 -0.9 3,368,625 + OKGIIK_15480 0.16 -1.3 3,368,625 + OKGIIK_15480 0.16 -3.5 3,368,856 + OKGIIK_15480 0.41 -0.7 3,368,856 + OKGIIK_15480 0.41 +1.6 3,368,856 + OKGIIK_15480 0.41 -0.3 3,368,856 + OKGIIK_15480 0.41 -0.6 3,368,856 + OKGIIK_15480 0.41 -0.3 3,368,856 + OKGIIK_15480 0.41 +0.3 3,368,856 + OKGIIK_15480 0.41 -1.4 3,368,856 + OKGIIK_15480 0.41 +0.3 3,368,856 + OKGIIK_15480 0.41 -1.6 3,368,857 - OKGIIK_15480 0.41 -0.6 3,369,204 + OKGIIK_15480 0.78 -0.3 3,369,204 + OKGIIK_15480 0.78 -1.3 3,369,205 - OKGIIK_15480 0.78 -1.0 3,369,205 - OKGIIK_15480 0.78 -0.1
Or see this region's nucleotide sequence