Strain Fitness in Rhodanobacter sp. FW510-T8 around OKGIIK_12095

Experiment: R2A_PIPES with Cobalt chloride 1024 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntrecG and ridA are separated by 82 nucleotidesridA and spoT are separated by 134 nucleotides OKGIIK_12090: recG - ATP-dependent DNA helicase RecG, at 2,605,140 to 2,607,254 recG OKGIIK_12095: ridA - reactive intermediate/imine deaminase, at 2,607,337 to 2,607,720 ridA OKGIIK_12100: spoT - guanosine-3',5'-bis(diphosphate) 3'-diphosphatase, at 2,607,855 to 2,610,020 spoT Position (kb) 2607 2608Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2606.617 kb on + strand, within recGat 2606.617 kb on + strand, within recGat 2606.617 kb on + strand, within recGat 2606.617 kb on + strand, within recGat 2606.617 kb on + strand, within recGat 2606.617 kb on + strand, within recGat 2606.617 kb on + strand, within recGat 2606.617 kb on + strand, within recGat 2606.617 kb on + strand, within recGat 2606.617 kb on + strand, within recGat 2606.617 kb on + strand, within recGat 2606.617 kb on + strand, within recGat 2606.618 kb on - strand, within recGat 2606.618 kb on - strand, within recGat 2606.618 kb on - strand, within recGat 2606.618 kb on - strand, within recGat 2606.618 kb on - strand, within recGat 2606.618 kb on - strand, within recGat 2606.618 kb on - strand, within recGat 2606.618 kb on - strand, within recGat 2606.767 kb on + strand, within recGat 2606.768 kb on - strand, within recGat 2606.824 kb on + strand, within recGat 2606.824 kb on + strand, within recGat 2606.824 kb on + strand, within recGat 2606.824 kb on + strand, within recGat 2606.824 kb on + strand, within recGat 2606.825 kb on - strand, within recGat 2606.825 kb on - strand, within recGat 2606.825 kb on - strand, within recGat 2606.825 kb on - strand, within recGat 2606.825 kb on - strand, within recGat 2606.825 kb on - strand, within recGat 2606.825 kb on - strand, within recGat 2606.825 kb on - strand, within recGat 2606.976 kb on + strand, within recGat 2606.976 kb on + strand, within recGat 2606.976 kb on + strand, within recGat 2606.976 kb on + strand, within recGat 2606.976 kb on + strand, within recGat 2606.977 kb on - strand, within recGat 2607.095 kb on - strandat 2607.267 kb on + strandat 2607.268 kb on - strandat 2607.290 kb on + strandat 2607.434 kb on + strand, within ridAat 2607.434 kb on + strand, within ridAat 2607.434 kb on + strand, within ridAat 2607.435 kb on - strand, within ridAat 2607.435 kb on - strand, within ridAat 2607.435 kb on - strand, within ridAat 2607.435 kb on - strand, within ridAat 2607.435 kb on - strand, within ridAat 2607.485 kb on + strand, within ridAat 2607.485 kb on + strand, within ridAat 2607.485 kb on + strand, within ridAat 2607.485 kb on + strand, within ridAat 2607.485 kb on + strand, within ridAat 2607.485 kb on + strand, within ridAat 2607.485 kb on + strand, within ridAat 2607.485 kb on + strand, within ridAat 2607.485 kb on + strand, within ridAat 2607.485 kb on + strand, within ridAat 2607.485 kb on + strand, within ridAat 2607.485 kb on + strand, within ridAat 2607.485 kb on + strand, within ridAat 2607.485 kb on + strand, within ridAat 2607.485 kb on + strand, within ridAat 2607.485 kb on + strand, within ridAat 2607.485 kb on + strand, within ridAat 2607.485 kb on + strand, within ridAat 2607.485 kb on + strand, within ridAat 2607.485 kb on + strand, within ridAat 2607.485 kb on + strand, within ridAat 2607.485 kb on + strand, within ridAat 2607.486 kb on - strand, within ridAat 2607.486 kb on - strand, within ridAat 2607.486 kb on - strand, within ridAat 2607.486 kb on - strand, within ridAat 2607.486 kb on - strand, within ridAat 2607.486 kb on - strand, within ridAat 2607.486 kb on - strand, within ridAat 2607.486 kb on - strand, within ridAat 2607.486 kb on - strand, within ridAat 2607.486 kb on - strand, within ridAat 2607.486 kb on - strand, within ridAat 2607.486 kb on - strand, within ridAat 2607.486 kb on - strand, within ridAat 2607.486 kb on - strand, within ridAat 2607.486 kb on - strand, within ridAat 2607.486 kb on - strand, within ridAat 2607.486 kb on - strand, within ridAat 2607.486 kb on - strand, within ridAat 2607.597 kb on + strand, within ridAat 2607.597 kb on + strand, within ridAat 2607.598 kb on - strand, within ridAat 2607.635 kb on + strand, within ridAat 2607.635 kb on + strand, within ridAat 2607.635 kb on + strand, within ridAat 2607.635 kb on + strand, within ridAat 2607.635 kb on + strand, within ridAat 2607.635 kb on + strand, within ridAat 2607.635 kb on + strand, within ridAat 2607.636 kb on - strand, within ridAat 2607.636 kb on - strand, within ridAat 2607.636 kb on - strand, within ridAat 2607.636 kb on - strand, within ridAat 2607.636 kb on - strand, within ridAat 2607.636 kb on - strand, within ridAat 2607.636 kb on - strand, within ridAat 2607.636 kb on - strand, within ridAat 2607.636 kb on - strand, within ridAat 2607.636 kb on - strand, within ridAat 2607.636 kb on - strand, within ridAat 2607.642 kb on + strand, within ridAat 2607.643 kb on - strand, within ridAat 2607.643 kb on - strand, within ridAat 2607.668 kb on + strand, within ridAat 2607.781 kb on + strandat 2607.781 kb on + strandat 2607.782 kb on - strandat 2607.782 kb on - strandat 2607.806 kb on + strandat 2607.806 kb on + strandat 2607.806 kb on + strandat 2607.806 kb on + strandat 2607.806 kb on + strandat 2607.806 kb on + strandat 2607.806 kb on + strandat 2607.806 kb on + strandat 2607.806 kb on + strandat 2607.806 kb on + strandat 2607.806 kb on + strandat 2607.806 kb on + strandat 2607.807 kb on - strandat 2607.807 kb on - strandat 2607.807 kb on - strandat 2607.807 kb on - strandat 2607.807 kb on - strandat 2607.807 kb on - strandat 2607.807 kb on - strandat 2607.807 kb on - strandat 2607.807 kb on - strandat 2607.825 kb on + strandat 2607.825 kb on + strandat 2607.825 kb on + strandat 2607.825 kb on + strandat 2607.826 kb on - strandat 2607.826 kb on - strandat 2607.826 kb on - strandat 2607.826 kb on - strandat 2607.871 kb on + strandat 2607.871 kb on + strandat 2607.871 kb on + strandat 2607.872 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A_PIPES with Cobalt chloride 1024 uM
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2,606,617 + recG OKGIIK_12090 0.70 -0.6
2,606,617 + recG OKGIIK_12090 0.70 -0.9
2,606,617 + recG OKGIIK_12090 0.70 +1.9
2,606,617 + recG OKGIIK_12090 0.70 +0.6
2,606,617 + recG OKGIIK_12090 0.70 -0.4
2,606,617 + recG OKGIIK_12090 0.70 +0.6
2,606,617 + recG OKGIIK_12090 0.70 +1.6
2,606,617 + recG OKGIIK_12090 0.70 -0.8
2,606,617 + recG OKGIIK_12090 0.70 +0.3
2,606,617 + recG OKGIIK_12090 0.70 -0.8
2,606,617 + recG OKGIIK_12090 0.70 -0.6
2,606,617 + recG OKGIIK_12090 0.70 -1.0
2,606,618 - recG OKGIIK_12090 0.70 +0.3
2,606,618 - recG OKGIIK_12090 0.70 -0.9
2,606,618 - recG OKGIIK_12090 0.70 -0.9
2,606,618 - recG OKGIIK_12090 0.70 -0.7
2,606,618 - recG OKGIIK_12090 0.70 +0.1
2,606,618 - recG OKGIIK_12090 0.70 +1.9
2,606,618 - recG OKGIIK_12090 0.70 +0.5
2,606,618 - recG OKGIIK_12090 0.70 +0.3
2,606,767 + recG OKGIIK_12090 0.77 -0.4
2,606,768 - recG OKGIIK_12090 0.77 +0.3
2,606,824 + recG OKGIIK_12090 0.80 -0.9
2,606,824 + recG OKGIIK_12090 0.80 -0.7
2,606,824 + recG OKGIIK_12090 0.80 +1.2
2,606,824 + recG OKGIIK_12090 0.80 -0.2
2,606,824 + recG OKGIIK_12090 0.80 +0.2
2,606,825 - recG OKGIIK_12090 0.80 -0.4
2,606,825 - recG OKGIIK_12090 0.80 -0.2
2,606,825 - recG OKGIIK_12090 0.80 +0.5
2,606,825 - recG OKGIIK_12090 0.80 +0.3
2,606,825 - recG OKGIIK_12090 0.80 -0.7
2,606,825 - recG OKGIIK_12090 0.80 +0.3
2,606,825 - recG OKGIIK_12090 0.80 -1.8
2,606,825 - recG OKGIIK_12090 0.80 +0.0
2,606,976 + recG OKGIIK_12090 0.87 +1.2
2,606,976 + recG OKGIIK_12090 0.87 -0.8
2,606,976 + recG OKGIIK_12090 0.87 -2.2
2,606,976 + recG OKGIIK_12090 0.87 +0.9
2,606,976 + recG OKGIIK_12090 0.87 +0.6
2,606,977 - recG OKGIIK_12090 0.87 -0.9
2,607,095 - -0.7
2,607,267 + +0.6
2,607,268 - -0.2
2,607,290 + -0.9
2,607,434 + ridA OKGIIK_12095 0.25 -2.5
2,607,434 + ridA OKGIIK_12095 0.25 -1.7
2,607,434 + ridA OKGIIK_12095 0.25 +0.9
2,607,435 - ridA OKGIIK_12095 0.26 +0.0
2,607,435 - ridA OKGIIK_12095 0.26 -1.4
2,607,435 - ridA OKGIIK_12095 0.26 -2.2
2,607,435 - ridA OKGIIK_12095 0.26 -2.1
2,607,435 - ridA OKGIIK_12095 0.26 -1.3
2,607,485 + ridA OKGIIK_12095 0.39 -0.9
2,607,485 + ridA OKGIIK_12095 0.39 -0.2
2,607,485 + ridA OKGIIK_12095 0.39 -0.6
2,607,485 + ridA OKGIIK_12095 0.39 -0.1
2,607,485 + ridA OKGIIK_12095 0.39 -0.9
2,607,485 + ridA OKGIIK_12095 0.39 -2.1
2,607,485 + ridA OKGIIK_12095 0.39 -1.1
2,607,485 + ridA OKGIIK_12095 0.39 -2.0
2,607,485 + ridA OKGIIK_12095 0.39 -1.7
2,607,485 + ridA OKGIIK_12095 0.39 -1.1
2,607,485 + ridA OKGIIK_12095 0.39 -3.1
2,607,485 + ridA OKGIIK_12095 0.39 -0.4
2,607,485 + ridA OKGIIK_12095 0.39 -0.1
2,607,485 + ridA OKGIIK_12095 0.39 -0.1
2,607,485 + ridA OKGIIK_12095 0.39 -0.7
2,607,485 + ridA OKGIIK_12095 0.39 -0.4
2,607,485 + ridA OKGIIK_12095 0.39 +1.1
2,607,485 + ridA OKGIIK_12095 0.39 +0.6
2,607,485 + ridA OKGIIK_12095 0.39 -1.4
2,607,485 + ridA OKGIIK_12095 0.39 +0.6
2,607,485 + ridA OKGIIK_12095 0.39 -1.6
2,607,485 + ridA OKGIIK_12095 0.39 -2.1
2,607,486 - ridA OKGIIK_12095 0.39 -2.2
2,607,486 - ridA OKGIIK_12095 0.39 -1.8
2,607,486 - ridA OKGIIK_12095 0.39 -0.1
2,607,486 - ridA OKGIIK_12095 0.39 +0.5
2,607,486 - ridA OKGIIK_12095 0.39 +0.0
2,607,486 - ridA OKGIIK_12095 0.39 -1.5
2,607,486 - ridA OKGIIK_12095 0.39 +0.1
2,607,486 - ridA OKGIIK_12095 0.39 -1.2
2,607,486 - ridA OKGIIK_12095 0.39 -0.7
2,607,486 - ridA OKGIIK_12095 0.39 -1.2
2,607,486 - ridA OKGIIK_12095 0.39 -0.4
2,607,486 - ridA OKGIIK_12095 0.39 -1.0
2,607,486 - ridA OKGIIK_12095 0.39 +0.5
2,607,486 - ridA OKGIIK_12095 0.39 -1.8
2,607,486 - ridA OKGIIK_12095 0.39 +0.3
2,607,486 - ridA OKGIIK_12095 0.39 -2.4
2,607,486 - ridA OKGIIK_12095 0.39 -0.9
2,607,486 - ridA OKGIIK_12095 0.39 -0.1
2,607,597 + ridA OKGIIK_12095 0.68 -1.4
2,607,597 + ridA OKGIIK_12095 0.68 -0.7
2,607,598 - ridA OKGIIK_12095 0.68 -1.5
2,607,635 + ridA OKGIIK_12095 0.78 +0.9
2,607,635 + ridA OKGIIK_12095 0.78 -0.6
2,607,635 + ridA OKGIIK_12095 0.78 -1.0
2,607,635 + ridA OKGIIK_12095 0.78 -2.0
2,607,635 + ridA OKGIIK_12095 0.78 -0.4
2,607,635 + ridA OKGIIK_12095 0.78 +0.9
2,607,635 + ridA OKGIIK_12095 0.78 -0.7
2,607,636 - ridA OKGIIK_12095 0.78 +0.0
2,607,636 - ridA OKGIIK_12095 0.78 +1.3
2,607,636 - ridA OKGIIK_12095 0.78 +0.7
2,607,636 - ridA OKGIIK_12095 0.78 -1.1
2,607,636 - ridA OKGIIK_12095 0.78 -1.5
2,607,636 - ridA OKGIIK_12095 0.78 -0.9
2,607,636 - ridA OKGIIK_12095 0.78 -0.9
2,607,636 - ridA OKGIIK_12095 0.78 -1.1
2,607,636 - ridA OKGIIK_12095 0.78 -1.5
2,607,636 - ridA OKGIIK_12095 0.78 +0.6
2,607,636 - ridA OKGIIK_12095 0.78 -3.1
2,607,642 + ridA OKGIIK_12095 0.79 -0.1
2,607,643 - ridA OKGIIK_12095 0.80 -0.9
2,607,643 - ridA OKGIIK_12095 0.80 -0.1
2,607,668 + ridA OKGIIK_12095 0.86 -2.3
2,607,781 + +0.9
2,607,781 + +0.0
2,607,782 - +0.0
2,607,782 - -0.1
2,607,806 + -0.7
2,607,806 + -0.3
2,607,806 + +0.6
2,607,806 + -0.7
2,607,806 + -0.2
2,607,806 + +1.2
2,607,806 + -0.7
2,607,806 + +0.9
2,607,806 + -0.1
2,607,806 + +0.0
2,607,806 + -1.3
2,607,806 + +0.5
2,607,807 - +1.1
2,607,807 - +0.1
2,607,807 - -1.2
2,607,807 - +1.1
2,607,807 - +0.8
2,607,807 - +1.9
2,607,807 - +2.6
2,607,807 - -0.5
2,607,807 - +0.9
2,607,825 + +1.6
2,607,825 + -0.5
2,607,825 + -2.2
2,607,825 + -0.8
2,607,826 - -0.4
2,607,826 - -0.2
2,607,826 - +0.8
2,607,826 - -0.9
2,607,871 + +0.1
2,607,871 + -0.4
2,607,871 + -0.7
2,607,872 - -0.2

Or see this region's nucleotide sequence