Experiment: R2A_PIPES with Cobalt chloride 1024 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt recG and ridA are separated by 82 nucleotides ridA and spoT are separated by 134 nucleotides
OKGIIK_12090: recG - ATP-dependent DNA helicase RecG, at 2,605,140 to 2,607,254
recG
OKGIIK_12095: ridA - reactive intermediate/imine deaminase, at 2,607,337 to 2,607,720
ridA
OKGIIK_12100: spoT - guanosine-3',5'-bis(diphosphate) 3'-diphosphatase, at 2,607,855 to 2,610,020
spoT
Position (kb)
2607
2608 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2606.617 kb on + strand, within recG at 2606.617 kb on + strand, within recG at 2606.617 kb on + strand, within recG at 2606.617 kb on + strand, within recG at 2606.617 kb on + strand, within recG at 2606.617 kb on + strand, within recG at 2606.617 kb on + strand, within recG at 2606.617 kb on + strand, within recG at 2606.617 kb on + strand, within recG at 2606.617 kb on + strand, within recG at 2606.617 kb on + strand, within recG at 2606.617 kb on + strand, within recG at 2606.618 kb on - strand, within recG at 2606.618 kb on - strand, within recG at 2606.618 kb on - strand, within recG at 2606.618 kb on - strand, within recG at 2606.618 kb on - strand, within recG at 2606.618 kb on - strand, within recG at 2606.618 kb on - strand, within recG at 2606.618 kb on - strand, within recG at 2606.767 kb on + strand, within recG at 2606.768 kb on - strand, within recG at 2606.824 kb on + strand, within recG at 2606.824 kb on + strand, within recG at 2606.824 kb on + strand, within recG at 2606.824 kb on + strand, within recG at 2606.824 kb on + strand, within recG at 2606.825 kb on - strand, within recG at 2606.825 kb on - strand, within recG at 2606.825 kb on - strand, within recG at 2606.825 kb on - strand, within recG at 2606.825 kb on - strand, within recG at 2606.825 kb on - strand, within recG at 2606.825 kb on - strand, within recG at 2606.825 kb on - strand, within recG at 2606.976 kb on + strand, within recG at 2606.976 kb on + strand, within recG at 2606.976 kb on + strand, within recG at 2606.976 kb on + strand, within recG at 2606.976 kb on + strand, within recG at 2606.977 kb on - strand, within recG at 2607.095 kb on - strand at 2607.267 kb on + strand at 2607.268 kb on - strand at 2607.290 kb on + strand at 2607.434 kb on + strand, within ridA at 2607.434 kb on + strand, within ridA at 2607.434 kb on + strand, within ridA at 2607.435 kb on - strand, within ridA at 2607.435 kb on - strand, within ridA at 2607.435 kb on - strand, within ridA at 2607.435 kb on - strand, within ridA at 2607.435 kb on - strand, within ridA at 2607.485 kb on + strand, within ridA at 2607.485 kb on + strand, within ridA at 2607.485 kb on + strand, within ridA at 2607.485 kb on + strand, within ridA at 2607.485 kb on + strand, within ridA at 2607.485 kb on + strand, within ridA at 2607.485 kb on + strand, within ridA at 2607.485 kb on + strand, within ridA at 2607.485 kb on + strand, within ridA at 2607.485 kb on + strand, within ridA at 2607.485 kb on + strand, within ridA at 2607.485 kb on + strand, within ridA at 2607.485 kb on + strand, within ridA at 2607.485 kb on + strand, within ridA at 2607.485 kb on + strand, within ridA at 2607.485 kb on + strand, within ridA at 2607.485 kb on + strand, within ridA at 2607.485 kb on + strand, within ridA at 2607.485 kb on + strand, within ridA at 2607.485 kb on + strand, within ridA at 2607.485 kb on + strand, within ridA at 2607.485 kb on + strand, within ridA at 2607.486 kb on - strand, within ridA at 2607.486 kb on - strand, within ridA at 2607.486 kb on - strand, within ridA at 2607.486 kb on - strand, within ridA at 2607.486 kb on - strand, within ridA at 2607.486 kb on - strand, within ridA at 2607.486 kb on - strand, within ridA at 2607.486 kb on - strand, within ridA at 2607.486 kb on - strand, within ridA at 2607.486 kb on - strand, within ridA at 2607.486 kb on - strand, within ridA at 2607.486 kb on - strand, within ridA at 2607.486 kb on - strand, within ridA at 2607.486 kb on - strand, within ridA at 2607.486 kb on - strand, within ridA at 2607.486 kb on - strand, within ridA at 2607.486 kb on - strand, within ridA at 2607.486 kb on - strand, within ridA at 2607.597 kb on + strand, within ridA at 2607.597 kb on + strand, within ridA at 2607.598 kb on - strand, within ridA at 2607.635 kb on + strand, within ridA at 2607.635 kb on + strand, within ridA at 2607.635 kb on + strand, within ridA at 2607.635 kb on + strand, within ridA at 2607.635 kb on + strand, within ridA at 2607.635 kb on + strand, within ridA at 2607.635 kb on + strand, within ridA at 2607.636 kb on - strand, within ridA at 2607.636 kb on - strand, within ridA at 2607.636 kb on - strand, within ridA at 2607.636 kb on - strand, within ridA at 2607.636 kb on - strand, within ridA at 2607.636 kb on - strand, within ridA at 2607.636 kb on - strand, within ridA at 2607.636 kb on - strand, within ridA at 2607.636 kb on - strand, within ridA at 2607.636 kb on - strand, within ridA at 2607.636 kb on - strand, within ridA at 2607.642 kb on + strand, within ridA at 2607.643 kb on - strand, within ridA at 2607.643 kb on - strand, within ridA at 2607.668 kb on + strand, within ridA at 2607.781 kb on + strand at 2607.781 kb on + strand at 2607.782 kb on - strand at 2607.782 kb on - strand at 2607.806 kb on + strand at 2607.806 kb on + strand at 2607.806 kb on + strand at 2607.806 kb on + strand at 2607.806 kb on + strand at 2607.806 kb on + strand at 2607.806 kb on + strand at 2607.806 kb on + strand at 2607.806 kb on + strand at 2607.806 kb on + strand at 2607.806 kb on + strand at 2607.806 kb on + strand at 2607.807 kb on - strand at 2607.807 kb on - strand at 2607.807 kb on - strand at 2607.807 kb on - strand at 2607.807 kb on - strand at 2607.807 kb on - strand at 2607.807 kb on - strand at 2607.807 kb on - strand at 2607.807 kb on - strand at 2607.825 kb on + strand at 2607.825 kb on + strand at 2607.825 kb on + strand at 2607.825 kb on + strand at 2607.826 kb on - strand at 2607.826 kb on - strand at 2607.826 kb on - strand at 2607.826 kb on - strand at 2607.871 kb on + strand at 2607.871 kb on + strand at 2607.871 kb on + strand at 2607.872 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A_PIPES with Cobalt chloride 1024 uM remove 2,606,617 + recG OKGIIK_12090 0.70 -0.6 2,606,617 + recG OKGIIK_12090 0.70 -0.9 2,606,617 + recG OKGIIK_12090 0.70 +1.9 2,606,617 + recG OKGIIK_12090 0.70 +0.6 2,606,617 + recG OKGIIK_12090 0.70 -0.4 2,606,617 + recG OKGIIK_12090 0.70 +0.6 2,606,617 + recG OKGIIK_12090 0.70 +1.6 2,606,617 + recG OKGIIK_12090 0.70 -0.8 2,606,617 + recG OKGIIK_12090 0.70 +0.3 2,606,617 + recG OKGIIK_12090 0.70 -0.8 2,606,617 + recG OKGIIK_12090 0.70 -0.6 2,606,617 + recG OKGIIK_12090 0.70 -1.0 2,606,618 - recG OKGIIK_12090 0.70 +0.3 2,606,618 - recG OKGIIK_12090 0.70 -0.9 2,606,618 - recG OKGIIK_12090 0.70 -0.9 2,606,618 - recG OKGIIK_12090 0.70 -0.7 2,606,618 - recG OKGIIK_12090 0.70 +0.1 2,606,618 - recG OKGIIK_12090 0.70 +1.9 2,606,618 - recG OKGIIK_12090 0.70 +0.5 2,606,618 - recG OKGIIK_12090 0.70 +0.3 2,606,767 + recG OKGIIK_12090 0.77 -0.4 2,606,768 - recG OKGIIK_12090 0.77 +0.3 2,606,824 + recG OKGIIK_12090 0.80 -0.9 2,606,824 + recG OKGIIK_12090 0.80 -0.7 2,606,824 + recG OKGIIK_12090 0.80 +1.2 2,606,824 + recG OKGIIK_12090 0.80 -0.2 2,606,824 + recG OKGIIK_12090 0.80 +0.2 2,606,825 - recG OKGIIK_12090 0.80 -0.4 2,606,825 - recG OKGIIK_12090 0.80 -0.2 2,606,825 - recG OKGIIK_12090 0.80 +0.5 2,606,825 - recG OKGIIK_12090 0.80 +0.3 2,606,825 - recG OKGIIK_12090 0.80 -0.7 2,606,825 - recG OKGIIK_12090 0.80 +0.3 2,606,825 - recG OKGIIK_12090 0.80 -1.8 2,606,825 - recG OKGIIK_12090 0.80 +0.0 2,606,976 + recG OKGIIK_12090 0.87 +1.2 2,606,976 + recG OKGIIK_12090 0.87 -0.8 2,606,976 + recG OKGIIK_12090 0.87 -2.2 2,606,976 + recG OKGIIK_12090 0.87 +0.9 2,606,976 + recG OKGIIK_12090 0.87 +0.6 2,606,977 - recG OKGIIK_12090 0.87 -0.9 2,607,095 - -0.7 2,607,267 + +0.6 2,607,268 - -0.2 2,607,290 + -0.9 2,607,434 + ridA OKGIIK_12095 0.25 -2.5 2,607,434 + ridA OKGIIK_12095 0.25 -1.7 2,607,434 + ridA OKGIIK_12095 0.25 +0.9 2,607,435 - ridA OKGIIK_12095 0.26 +0.0 2,607,435 - ridA OKGIIK_12095 0.26 -1.4 2,607,435 - ridA OKGIIK_12095 0.26 -2.2 2,607,435 - ridA OKGIIK_12095 0.26 -2.1 2,607,435 - ridA OKGIIK_12095 0.26 -1.3 2,607,485 + ridA OKGIIK_12095 0.39 -0.9 2,607,485 + ridA OKGIIK_12095 0.39 -0.2 2,607,485 + ridA OKGIIK_12095 0.39 -0.6 2,607,485 + ridA OKGIIK_12095 0.39 -0.1 2,607,485 + ridA OKGIIK_12095 0.39 -0.9 2,607,485 + ridA OKGIIK_12095 0.39 -2.1 2,607,485 + ridA OKGIIK_12095 0.39 -1.1 2,607,485 + ridA OKGIIK_12095 0.39 -2.0 2,607,485 + ridA OKGIIK_12095 0.39 -1.7 2,607,485 + ridA OKGIIK_12095 0.39 -1.1 2,607,485 + ridA OKGIIK_12095 0.39 -3.1 2,607,485 + ridA OKGIIK_12095 0.39 -0.4 2,607,485 + ridA OKGIIK_12095 0.39 -0.1 2,607,485 + ridA OKGIIK_12095 0.39 -0.1 2,607,485 + ridA OKGIIK_12095 0.39 -0.7 2,607,485 + ridA OKGIIK_12095 0.39 -0.4 2,607,485 + ridA OKGIIK_12095 0.39 +1.1 2,607,485 + ridA OKGIIK_12095 0.39 +0.6 2,607,485 + ridA OKGIIK_12095 0.39 -1.4 2,607,485 + ridA OKGIIK_12095 0.39 +0.6 2,607,485 + ridA OKGIIK_12095 0.39 -1.6 2,607,485 + ridA OKGIIK_12095 0.39 -2.1 2,607,486 - ridA OKGIIK_12095 0.39 -2.2 2,607,486 - ridA OKGIIK_12095 0.39 -1.8 2,607,486 - ridA OKGIIK_12095 0.39 -0.1 2,607,486 - ridA OKGIIK_12095 0.39 +0.5 2,607,486 - ridA OKGIIK_12095 0.39 +0.0 2,607,486 - ridA OKGIIK_12095 0.39 -1.5 2,607,486 - ridA OKGIIK_12095 0.39 +0.1 2,607,486 - ridA OKGIIK_12095 0.39 -1.2 2,607,486 - ridA OKGIIK_12095 0.39 -0.7 2,607,486 - ridA OKGIIK_12095 0.39 -1.2 2,607,486 - ridA OKGIIK_12095 0.39 -0.4 2,607,486 - ridA OKGIIK_12095 0.39 -1.0 2,607,486 - ridA OKGIIK_12095 0.39 +0.5 2,607,486 - ridA OKGIIK_12095 0.39 -1.8 2,607,486 - ridA OKGIIK_12095 0.39 +0.3 2,607,486 - ridA OKGIIK_12095 0.39 -2.4 2,607,486 - ridA OKGIIK_12095 0.39 -0.9 2,607,486 - ridA OKGIIK_12095 0.39 -0.1 2,607,597 + ridA OKGIIK_12095 0.68 -1.4 2,607,597 + ridA OKGIIK_12095 0.68 -0.7 2,607,598 - ridA OKGIIK_12095 0.68 -1.5 2,607,635 + ridA OKGIIK_12095 0.78 +0.9 2,607,635 + ridA OKGIIK_12095 0.78 -0.6 2,607,635 + ridA OKGIIK_12095 0.78 -1.0 2,607,635 + ridA OKGIIK_12095 0.78 -2.0 2,607,635 + ridA OKGIIK_12095 0.78 -0.4 2,607,635 + ridA OKGIIK_12095 0.78 +0.9 2,607,635 + ridA OKGIIK_12095 0.78 -0.7 2,607,636 - ridA OKGIIK_12095 0.78 +0.0 2,607,636 - ridA OKGIIK_12095 0.78 +1.3 2,607,636 - ridA OKGIIK_12095 0.78 +0.7 2,607,636 - ridA OKGIIK_12095 0.78 -1.1 2,607,636 - ridA OKGIIK_12095 0.78 -1.5 2,607,636 - ridA OKGIIK_12095 0.78 -0.9 2,607,636 - ridA OKGIIK_12095 0.78 -0.9 2,607,636 - ridA OKGIIK_12095 0.78 -1.1 2,607,636 - ridA OKGIIK_12095 0.78 -1.5 2,607,636 - ridA OKGIIK_12095 0.78 +0.6 2,607,636 - ridA OKGIIK_12095 0.78 -3.1 2,607,642 + ridA OKGIIK_12095 0.79 -0.1 2,607,643 - ridA OKGIIK_12095 0.80 -0.9 2,607,643 - ridA OKGIIK_12095 0.80 -0.1 2,607,668 + ridA OKGIIK_12095 0.86 -2.3 2,607,781 + +0.9 2,607,781 + +0.0 2,607,782 - +0.0 2,607,782 - -0.1 2,607,806 + -0.7 2,607,806 + -0.3 2,607,806 + +0.6 2,607,806 + -0.7 2,607,806 + -0.2 2,607,806 + +1.2 2,607,806 + -0.7 2,607,806 + +0.9 2,607,806 + -0.1 2,607,806 + +0.0 2,607,806 + -1.3 2,607,806 + +0.5 2,607,807 - +1.1 2,607,807 - +0.1 2,607,807 - -1.2 2,607,807 - +1.1 2,607,807 - +0.8 2,607,807 - +1.9 2,607,807 - +2.6 2,607,807 - -0.5 2,607,807 - +0.9 2,607,825 + +1.6 2,607,825 + -0.5 2,607,825 + -2.2 2,607,825 + -0.8 2,607,826 - -0.4 2,607,826 - -0.2 2,607,826 - +0.8 2,607,826 - -0.9 2,607,871 + +0.1 2,607,871 + -0.4 2,607,871 + -0.7 2,607,872 - -0.2
Or see this region's nucleotide sequence