Strain Fitness in Rhodanobacter sp. FW510-T8 around OKGIIK_07240

Experiment: R2A_PIPES with Cobalt chloride 1024 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOKGIIK_07230 and galU are separated by 109 nucleotidesgalU and flaA1 overlap by 4 nucleotidesflaA1 and OKGIIK_07245 overlap by 14 nucleotides OKGIIK_07230: OKGIIK_07230 - FAD-dependent oxidoreductase, at 1,598,441 to 1,599,724 _07230 OKGIIK_07235: galU - UTP--glucose-1-phosphate uridylyltransferase GalU, at 1,599,834 to 1,600,724 galU OKGIIK_07240: flaA1 - polysaccharide biosynthesis protein, at 1,600,721 to 1,602,619 flaA1 OKGIIK_07245: OKGIIK_07245 - Glycosyl transferase family 4, at 1,602,606 to 1,603,628 _07245 Position (kb) 1600 1601 1602 1603Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 1600.947 kb on + strand, within flaA1at 1600.947 kb on + strand, within flaA1at 1600.947 kb on + strand, within flaA1at 1600.948 kb on - strand, within flaA1at 1600.948 kb on - strand, within flaA1at 1601.007 kb on + strand, within flaA1at 1601.007 kb on + strand, within flaA1at 1601.007 kb on + strand, within flaA1at 1601.008 kb on - strand, within flaA1at 1601.106 kb on + strand, within flaA1at 1601.106 kb on + strand, within flaA1at 1601.106 kb on + strand, within flaA1at 1601.106 kb on + strand, within flaA1at 1601.106 kb on + strand, within flaA1at 1601.107 kb on - strand, within flaA1at 1601.107 kb on - strand, within flaA1at 1601.107 kb on - strand, within flaA1at 1601.107 kb on - strand, within flaA1at 1601.107 kb on - strand, within flaA1at 1601.107 kb on - strand, within flaA1at 1601.107 kb on - strand, within flaA1at 1601.107 kb on - strand, within flaA1at 1601.107 kb on - strand, within flaA1at 1601.107 kb on - strand, within flaA1at 1601.107 kb on - strand, within flaA1at 1601.107 kb on - strand, within flaA1at 1601.178 kb on + strand, within flaA1at 1601.179 kb on - strand, within flaA1at 1601.179 kb on - strand, within flaA1at 1601.179 kb on - strand, within flaA1at 1601.246 kb on + strand, within flaA1at 1601.247 kb on - strand, within flaA1at 1601.331 kb on + strand, within flaA1at 1601.331 kb on + strand, within flaA1at 1601.331 kb on + strand, within flaA1at 1601.331 kb on + strand, within flaA1at 1601.331 kb on + strand, within flaA1at 1601.331 kb on + strand, within flaA1at 1601.331 kb on + strand, within flaA1at 1601.331 kb on + strand, within flaA1at 1601.331 kb on + strand, within flaA1at 1601.331 kb on + strand, within flaA1at 1601.331 kb on + strand, within flaA1at 1601.332 kb on - strand, within flaA1at 1601.332 kb on - strand, within flaA1at 1601.332 kb on - strand, within flaA1at 1601.332 kb on - strand, within flaA1at 1601.332 kb on - strand, within flaA1at 1601.332 kb on - strand, within flaA1at 1601.332 kb on - strand, within flaA1at 1601.332 kb on - strand, within flaA1at 1601.332 kb on - strand, within flaA1at 1601.332 kb on - strand, within flaA1at 1601.332 kb on - strand, within flaA1at 1601.514 kb on + strand, within flaA1at 1601.514 kb on + strand, within flaA1at 1601.514 kb on + strand, within flaA1at 1601.515 kb on - strand, within flaA1at 1601.515 kb on - strand, within flaA1at 1601.515 kb on - strand, within flaA1at 1601.515 kb on - strand, within flaA1at 1601.515 kb on - strand, within flaA1at 1601.515 kb on - strand, within flaA1at 1601.515 kb on - strand, within flaA1at 1601.546 kb on + strand, within flaA1at 1601.546 kb on + strand, within flaA1at 1601.546 kb on + strand, within flaA1at 1601.546 kb on + strand, within flaA1at 1601.546 kb on + strand, within flaA1at 1601.546 kb on + strand, within flaA1at 1601.546 kb on + strand, within flaA1at 1601.547 kb on - strand, within flaA1at 1601.547 kb on - strand, within flaA1at 1601.547 kb on - strand, within flaA1at 1601.547 kb on - strand, within flaA1at 1601.547 kb on - strand, within flaA1at 1601.653 kb on - strand, within flaA1at 1601.661 kb on + strand, within flaA1at 1601.661 kb on + strand, within flaA1at 1601.661 kb on + strand, within flaA1at 1601.661 kb on + strand, within flaA1at 1601.661 kb on + strand, within flaA1at 1601.661 kb on + strand, within flaA1at 1601.661 kb on + strand, within flaA1at 1601.662 kb on - strand, within flaA1at 1601.662 kb on - strand, within flaA1at 1601.662 kb on - strand, within flaA1at 1601.780 kb on - strand, within flaA1at 1601.902 kb on + strand, within flaA1at 1601.903 kb on - strand, within flaA1at 1601.924 kb on - strand, within flaA1at 1602.108 kb on + strand, within flaA1at 1602.109 kb on - strand, within flaA1at 1602.226 kb on - strand, within flaA1at 1602.226 kb on - strand, within flaA1at 1602.226 kb on - strand, within flaA1at 1602.231 kb on + strand, within flaA1at 1602.231 kb on + strand, within flaA1at 1602.232 kb on - strand, within flaA1at 1602.318 kb on + strand, within flaA1at 1602.318 kb on + strand, within flaA1at 1602.318 kb on + strand, within flaA1at 1602.318 kb on + strand, within flaA1at 1602.319 kb on - strand, within flaA1at 1602.319 kb on - strand, within flaA1at 1602.319 kb on - strand, within flaA1at 1602.319 kb on - strand, within flaA1at 1602.319 kb on - strand, within flaA1at 1602.319 kb on - strand, within flaA1at 1602.319 kb on - strand, within flaA1at 1602.349 kb on + strand, within flaA1at 1602.350 kb on - strand, within flaA1at 1602.417 kb on + strand, within flaA1at 1602.417 kb on + strand, within flaA1at 1602.418 kb on - strand, within flaA1at 1602.513 kb on + strandat 1602.513 kb on + strandat 1602.514 kb on - strandat 1602.607 kb on + strandat 1602.607 kb on + strandat 1602.607 kb on + strandat 1602.607 kb on + strandat 1602.607 kb on + strandat 1602.607 kb on + strandat 1602.608 kb on - strandat 1602.608 kb on - strandat 1602.608 kb on - strandat 1602.608 kb on - strandat 1602.608 kb on - strandat 1602.608 kb on - strandat 1602.691 kb on + strandat 1602.691 kb on + strandat 1602.691 kb on + strandat 1602.691 kb on + strandat 1602.691 kb on + strandat 1602.691 kb on + strandat 1602.692 kb on - strandat 1602.692 kb on - strandat 1602.692 kb on - strandat 1602.704 kb on + strandat 1602.704 kb on + strandat 1602.704 kb on + strandat 1602.704 kb on + strandat 1602.704 kb on + strandat 1602.705 kb on - strandat 1602.705 kb on - strandat 1602.781 kb on + strand, within OKGIIK_07245at 1602.781 kb on + strand, within OKGIIK_07245at 1602.781 kb on + strand, within OKGIIK_07245at 1602.781 kb on + strand, within OKGIIK_07245at 1602.781 kb on + strand, within OKGIIK_07245at 1602.832 kb on + strand, within OKGIIK_07245at 1602.832 kb on + strand, within OKGIIK_07245at 1602.832 kb on + strand, within OKGIIK_07245at 1602.832 kb on + strand, within OKGIIK_07245at 1602.832 kb on + strand, within OKGIIK_07245at 1602.832 kb on + strand, within OKGIIK_07245at 1602.832 kb on + strand, within OKGIIK_07245at 1602.833 kb on - strand, within OKGIIK_07245at 1602.833 kb on - strand, within OKGIIK_07245at 1602.833 kb on - strand, within OKGIIK_07245at 1602.833 kb on - strand, within OKGIIK_07245at 1602.856 kb on + strand, within OKGIIK_07245at 1602.856 kb on + strand, within OKGIIK_07245at 1602.857 kb on - strand, within OKGIIK_07245at 1602.857 kb on - strand, within OKGIIK_07245at 1602.857 kb on - strand, within OKGIIK_07245at 1602.857 kb on - strand, within OKGIIK_07245at 1602.857 kb on - strand, within OKGIIK_07245at 1603.555 kb on + strandat 1603.555 kb on + strandat 1603.573 kb on - strandat 1603.573 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A_PIPES with Cobalt chloride 1024 uM
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1,600,947 + flaA1 OKGIIK_07240 0.12 -0.2
1,600,947 + flaA1 OKGIIK_07240 0.12 -1.2
1,600,947 + flaA1 OKGIIK_07240 0.12 -1.6
1,600,948 - flaA1 OKGIIK_07240 0.12 -2.5
1,600,948 - flaA1 OKGIIK_07240 0.12 +0.2
1,601,007 + flaA1 OKGIIK_07240 0.15 -0.8
1,601,007 + flaA1 OKGIIK_07240 0.15 -0.8
1,601,007 + flaA1 OKGIIK_07240 0.15 +0.1
1,601,008 - flaA1 OKGIIK_07240 0.15 -1.8
1,601,106 + flaA1 OKGIIK_07240 0.20 -0.8
1,601,106 + flaA1 OKGIIK_07240 0.20 -2.1
1,601,106 + flaA1 OKGIIK_07240 0.20 -0.2
1,601,106 + flaA1 OKGIIK_07240 0.20 -0.9
1,601,106 + flaA1 OKGIIK_07240 0.20 -2.2
1,601,107 - flaA1 OKGIIK_07240 0.20 -3.7
1,601,107 - flaA1 OKGIIK_07240 0.20 -0.8
1,601,107 - flaA1 OKGIIK_07240 0.20 +0.2
1,601,107 - flaA1 OKGIIK_07240 0.20 -1.2
1,601,107 - flaA1 OKGIIK_07240 0.20 +0.2
1,601,107 - flaA1 OKGIIK_07240 0.20 -1.5
1,601,107 - flaA1 OKGIIK_07240 0.20 -0.9
1,601,107 - flaA1 OKGIIK_07240 0.20 -1.3
1,601,107 - flaA1 OKGIIK_07240 0.20 -2.5
1,601,107 - flaA1 OKGIIK_07240 0.20 -1.6
1,601,107 - flaA1 OKGIIK_07240 0.20 -0.5
1,601,107 - flaA1 OKGIIK_07240 0.20 -2.6
1,601,178 + flaA1 OKGIIK_07240 0.24 -2.0
1,601,179 - flaA1 OKGIIK_07240 0.24 -0.8
1,601,179 - flaA1 OKGIIK_07240 0.24 -1.0
1,601,179 - flaA1 OKGIIK_07240 0.24 +0.2
1,601,246 + flaA1 OKGIIK_07240 0.28 -1.2
1,601,247 - flaA1 OKGIIK_07240 0.28 -0.2
1,601,331 + flaA1 OKGIIK_07240 0.32 -1.0
1,601,331 + flaA1 OKGIIK_07240 0.32 -1.0
1,601,331 + flaA1 OKGIIK_07240 0.32 -0.2
1,601,331 + flaA1 OKGIIK_07240 0.32 -0.5
1,601,331 + flaA1 OKGIIK_07240 0.32 -0.2
1,601,331 + flaA1 OKGIIK_07240 0.32 -1.8
1,601,331 + flaA1 OKGIIK_07240 0.32 -0.5
1,601,331 + flaA1 OKGIIK_07240 0.32 -0.2
1,601,331 + flaA1 OKGIIK_07240 0.32 +1.1
1,601,331 + flaA1 OKGIIK_07240 0.32 -1.3
1,601,331 + flaA1 OKGIIK_07240 0.32 -1.2
1,601,332 - flaA1 OKGIIK_07240 0.32 -1.5
1,601,332 - flaA1 OKGIIK_07240 0.32 -1.9
1,601,332 - flaA1 OKGIIK_07240 0.32 -0.6
1,601,332 - flaA1 OKGIIK_07240 0.32 -1.0
1,601,332 - flaA1 OKGIIK_07240 0.32 -0.2
1,601,332 - flaA1 OKGIIK_07240 0.32 -0.2
1,601,332 - flaA1 OKGIIK_07240 0.32 -1.9
1,601,332 - flaA1 OKGIIK_07240 0.32 -2.4
1,601,332 - flaA1 OKGIIK_07240 0.32 -0.2
1,601,332 - flaA1 OKGIIK_07240 0.32 -0.5
1,601,332 - flaA1 OKGIIK_07240 0.32 +1.2
1,601,514 + flaA1 OKGIIK_07240 0.42 -0.8
1,601,514 + flaA1 OKGIIK_07240 0.42 -1.0
1,601,514 + flaA1 OKGIIK_07240 0.42 -0.9
1,601,515 - flaA1 OKGIIK_07240 0.42 -0.4
1,601,515 - flaA1 OKGIIK_07240 0.42 -1.5
1,601,515 - flaA1 OKGIIK_07240 0.42 -0.2
1,601,515 - flaA1 OKGIIK_07240 0.42 -1.9
1,601,515 - flaA1 OKGIIK_07240 0.42 -3.6
1,601,515 - flaA1 OKGIIK_07240 0.42 -1.2
1,601,515 - flaA1 OKGIIK_07240 0.42 -2.6
1,601,546 + flaA1 OKGIIK_07240 0.43 +0.4
1,601,546 + flaA1 OKGIIK_07240 0.43 -1.5
1,601,546 + flaA1 OKGIIK_07240 0.43 -2.0
1,601,546 + flaA1 OKGIIK_07240 0.43 +0.2
1,601,546 + flaA1 OKGIIK_07240 0.43 -0.2
1,601,546 + flaA1 OKGIIK_07240 0.43 -1.0
1,601,546 + flaA1 OKGIIK_07240 0.43 -1.0
1,601,547 - flaA1 OKGIIK_07240 0.43 -2.3
1,601,547 - flaA1 OKGIIK_07240 0.43 -1.2
1,601,547 - flaA1 OKGIIK_07240 0.43 -0.5
1,601,547 - flaA1 OKGIIK_07240 0.43 -1.2
1,601,547 - flaA1 OKGIIK_07240 0.43 -1.3
1,601,653 - flaA1 OKGIIK_07240 0.49 -1.2
1,601,661 + flaA1 OKGIIK_07240 0.49 -1.6
1,601,661 + flaA1 OKGIIK_07240 0.49 -1.5
1,601,661 + flaA1 OKGIIK_07240 0.49 -0.2
1,601,661 + flaA1 OKGIIK_07240 0.49 -0.8
1,601,661 + flaA1 OKGIIK_07240 0.49 -1.3
1,601,661 + flaA1 OKGIIK_07240 0.49 -2.5
1,601,661 + flaA1 OKGIIK_07240 0.49 +0.2
1,601,662 - flaA1 OKGIIK_07240 0.50 +0.8
1,601,662 - flaA1 OKGIIK_07240 0.50 -1.0
1,601,662 - flaA1 OKGIIK_07240 0.50 -0.3
1,601,780 - flaA1 OKGIIK_07240 0.56 -1.6
1,601,902 + flaA1 OKGIIK_07240 0.62 -1.2
1,601,903 - flaA1 OKGIIK_07240 0.62 -0.8
1,601,924 - flaA1 OKGIIK_07240 0.63 -2.0
1,602,108 + flaA1 OKGIIK_07240 0.73 -0.2
1,602,109 - flaA1 OKGIIK_07240 0.73 -1.2
1,602,226 - flaA1 OKGIIK_07240 0.79 -1.3
1,602,226 - flaA1 OKGIIK_07240 0.79 -1.2
1,602,226 - flaA1 OKGIIK_07240 0.79 +0.7
1,602,231 + flaA1 OKGIIK_07240 0.80 -0.2
1,602,231 + flaA1 OKGIIK_07240 0.80 -1.5
1,602,232 - flaA1 OKGIIK_07240 0.80 -3.0
1,602,318 + flaA1 OKGIIK_07240 0.84 -2.5
1,602,318 + flaA1 OKGIIK_07240 0.84 -1.2
1,602,318 + flaA1 OKGIIK_07240 0.84 -1.6
1,602,318 + flaA1 OKGIIK_07240 0.84 -1.3
1,602,319 - flaA1 OKGIIK_07240 0.84 -2.7
1,602,319 - flaA1 OKGIIK_07240 0.84 -1.0
1,602,319 - flaA1 OKGIIK_07240 0.84 -1.9
1,602,319 - flaA1 OKGIIK_07240 0.84 -0.5
1,602,319 - flaA1 OKGIIK_07240 0.84 +0.8
1,602,319 - flaA1 OKGIIK_07240 0.84 -1.3
1,602,319 - flaA1 OKGIIK_07240 0.84 -0.2
1,602,349 + flaA1 OKGIIK_07240 0.86 -0.8
1,602,350 - flaA1 OKGIIK_07240 0.86 -1.3
1,602,417 + flaA1 OKGIIK_07240 0.89 -1.9
1,602,417 + flaA1 OKGIIK_07240 0.89 -2.4
1,602,418 - flaA1 OKGIIK_07240 0.89 -0.5
1,602,513 + -2.4
1,602,513 + -1.8
1,602,514 - -0.6
1,602,607 + -0.2
1,602,607 + -0.8
1,602,607 + -2.3
1,602,607 + -0.1
1,602,607 + -0.2
1,602,607 + -1.2
1,602,608 - -1.0
1,602,608 - -1.0
1,602,608 - -1.3
1,602,608 - -2.2
1,602,608 - -1.6
1,602,608 - -1.2
1,602,691 + -1.0
1,602,691 + -1.6
1,602,691 + -0.2
1,602,691 + -2.4
1,602,691 + -1.0
1,602,691 + -1.2
1,602,692 - -1.2
1,602,692 - -1.6
1,602,692 - -0.2
1,602,704 + -1.6
1,602,704 + -1.3
1,602,704 + -2.1
1,602,704 + -0.8
1,602,704 + -1.0
1,602,705 - -0.3
1,602,705 - -1.2
1,602,781 + OKGIIK_07245 0.17 -2.6
1,602,781 + OKGIIK_07245 0.17 -0.9
1,602,781 + OKGIIK_07245 0.17 -0.2
1,602,781 + OKGIIK_07245 0.17 -0.5
1,602,781 + OKGIIK_07245 0.17 -0.5
1,602,832 + OKGIIK_07245 0.22 +0.8
1,602,832 + OKGIIK_07245 0.22 -1.8
1,602,832 + OKGIIK_07245 0.22 +0.5
1,602,832 + OKGIIK_07245 0.22 -2.8
1,602,832 + OKGIIK_07245 0.22 -0.2
1,602,832 + OKGIIK_07245 0.22 -1.3
1,602,832 + OKGIIK_07245 0.22 -0.5
1,602,833 - OKGIIK_07245 0.22 -1.0
1,602,833 - OKGIIK_07245 0.22 -0.2
1,602,833 - OKGIIK_07245 0.22 -0.8
1,602,833 - OKGIIK_07245 0.22 -0.5
1,602,856 + OKGIIK_07245 0.24 -2.4
1,602,856 + OKGIIK_07245 0.24 -0.6
1,602,857 - OKGIIK_07245 0.25 -4.3
1,602,857 - OKGIIK_07245 0.25 -2.6
1,602,857 - OKGIIK_07245 0.25 -2.3
1,602,857 - OKGIIK_07245 0.25 -0.2
1,602,857 - OKGIIK_07245 0.25 -1.2
1,603,555 + -1.3
1,603,555 + -0.2
1,603,573 - -0.2
1,603,573 - -0.8

Or see this region's nucleotide sequence