Experiment: R2A_PIPES with Cobalt chloride 1024 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt rIO1 and fieF are separated by 22 nucleotides fieF and slp are separated by 65 nucleotides slp and rlmJ are separated by 39 nucleotides
OKGIIK_04545: rIO1 - serine protein kinase RIO, at 994,902 to 995,759
rIO1
OKGIIK_04550: fieF - cation efflux family transporter, at 995,782 to 996,693
fieF
OKGIIK_04555: slp - Outer membrane lipoprotein Slp family, at 996,759 to 997,274
slp
OKGIIK_04560: rlmJ - 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ, at 997,314 to 998,228
rlmJ
Position (kb) 996
997
998 Strain fitness (log2 ratio) -2
-1
0
1
2 at 996.306 kb on + strand, within fieF at 996.306 kb on + strand, within fieF at 996.306 kb on + strand, within fieF at 996.306 kb on + strand, within fieF at 996.306 kb on + strand, within fieF at 996.306 kb on + strand, within fieF at 996.306 kb on + strand, within fieF at 996.306 kb on + strand, within fieF at 996.306 kb on + strand, within fieF at 996.306 kb on + strand, within fieF at 996.306 kb on + strand, within fieF at 996.306 kb on + strand, within fieF at 996.307 kb on - strand, within fieF at 996.307 kb on - strand, within fieF at 996.307 kb on - strand, within fieF at 996.307 kb on - strand, within fieF at 996.307 kb on - strand, within fieF at 996.307 kb on - strand, within fieF at 996.398 kb on + strand, within fieF at 996.398 kb on + strand, within fieF at 996.398 kb on + strand, within fieF at 996.398 kb on + strand, within fieF at 996.398 kb on + strand, within fieF at 996.399 kb on - strand, within fieF at 996.399 kb on - strand, within fieF at 996.399 kb on - strand, within fieF at 996.399 kb on - strand, within fieF at 996.399 kb on - strand, within fieF at 996.399 kb on - strand, within fieF at 996.399 kb on - strand, within fieF at 996.458 kb on + strand, within fieF at 996.458 kb on + strand, within fieF at 996.458 kb on + strand, within fieF at 996.458 kb on + strand, within fieF at 996.458 kb on + strand, within fieF at 996.458 kb on + strand, within fieF at 996.458 kb on + strand, within fieF at 996.458 kb on + strand, within fieF at 996.458 kb on + strand, within fieF at 996.458 kb on + strand, within fieF at 996.458 kb on + strand, within fieF at 996.458 kb on + strand, within fieF at 996.458 kb on + strand, within fieF at 996.459 kb on - strand, within fieF at 996.459 kb on - strand, within fieF at 996.459 kb on - strand, within fieF at 996.459 kb on - strand, within fieF at 996.459 kb on - strand, within fieF at 996.729 kb on + strand at 996.871 kb on + strand, within slp at 996.871 kb on + strand, within slp at 996.871 kb on + strand, within slp at 996.871 kb on + strand, within slp at 996.871 kb on + strand, within slp at 996.871 kb on + strand, within slp at 996.871 kb on + strand, within slp at 996.871 kb on + strand, within slp at 996.871 kb on + strand, within slp at 996.872 kb on - strand, within slp at 996.872 kb on - strand, within slp at 996.872 kb on - strand, within slp at 996.872 kb on - strand, within slp at 996.872 kb on - strand, within slp at 996.872 kb on - strand, within slp at 996.872 kb on - strand, within slp at 996.872 kb on - strand, within slp at 996.872 kb on - strand, within slp at 996.946 kb on + strand, within slp at 996.946 kb on + strand, within slp at 996.947 kb on - strand, within slp at 996.964 kb on + strand, within slp at 996.964 kb on + strand, within slp at 996.964 kb on + strand, within slp at 996.965 kb on - strand, within slp at 997.186 kb on + strand, within slp at 997.186 kb on + strand, within slp at 997.186 kb on + strand, within slp at 997.186 kb on + strand, within slp at 997.186 kb on + strand, within slp at 997.186 kb on + strand, within slp at 997.186 kb on + strand, within slp at 997.186 kb on - strand, within slp at 997.187 kb on - strand, within slp at 997.187 kb on - strand, within slp at 997.187 kb on - strand, within slp at 997.187 kb on - strand, within slp at 997.187 kb on - strand, within slp at 997.187 kb on - strand, within slp at 997.315 kb on + strand at 997.316 kb on - strand at 997.640 kb on - strand, within rlmJ at 997.651 kb on + strand, within rlmJ at 997.652 kb on - strand, within rlmJ at 997.708 kb on + strand, within rlmJ at 997.708 kb on + strand, within rlmJ at 997.708 kb on + strand, within rlmJ at 997.708 kb on + strand, within rlmJ at 997.708 kb on + strand, within rlmJ at 997.708 kb on + strand, within rlmJ at 997.709 kb on - strand, within rlmJ at 997.709 kb on - strand, within rlmJ at 997.709 kb on - strand, within rlmJ at 997.729 kb on + strand, within rlmJ at 997.730 kb on - strand, within rlmJ at 997.730 kb on - strand, within rlmJ at 997.795 kb on + strand, within rlmJ at 997.940 kb on - strand, within rlmJ at 998.089 kb on + strand, within rlmJ at 998.119 kb on + strand, within rlmJ at 998.119 kb on + strand, within rlmJ at 998.119 kb on + strand, within rlmJ at 998.119 kb on + strand, within rlmJ at 998.119 kb on + strand, within rlmJ at 998.119 kb on + strand, within rlmJ at 998.120 kb on - strand, within rlmJ at 998.120 kb on - strand, within rlmJ at 998.120 kb on - strand, within rlmJ at 998.120 kb on - strand, within rlmJ at 998.210 kb on - strand at 998.221 kb on + strand at 998.237 kb on + strand at 998.237 kb on + strand at 998.237 kb on + strand at 998.237 kb on + strand at 998.237 kb on + strand at 998.237 kb on + strand at 998.237 kb on + strand at 998.237 kb on + strand at 998.237 kb on + strand at 998.238 kb on - strand at 998.238 kb on - strand at 998.238 kb on - strand at 998.238 kb on - strand at 998.238 kb on - strand at 998.239 kb on + strand at 998.239 kb on + strand at 998.239 kb on + strand at 998.239 kb on + strand at 998.240 kb on - strand at 998.240 kb on - strand at 998.240 kb on - strand at 998.240 kb on - strand at 998.240 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A_PIPES with Cobalt chloride 1024 uM remove 996,306 + fieF OKGIIK_04550 0.57 -0.7 996,306 + fieF OKGIIK_04550 0.57 +1.0 996,306 + fieF OKGIIK_04550 0.57 -1.0 996,306 + fieF OKGIIK_04550 0.57 -0.3 996,306 + fieF OKGIIK_04550 0.57 -0.6 996,306 + fieF OKGIIK_04550 0.57 -1.3 996,306 + fieF OKGIIK_04550 0.57 -0.1 996,306 + fieF OKGIIK_04550 0.57 +0.2 996,306 + fieF OKGIIK_04550 0.57 +0.0 996,306 + fieF OKGIIK_04550 0.57 +1.1 996,306 + fieF OKGIIK_04550 0.57 +0.2 996,306 + fieF OKGIIK_04550 0.57 -1.0 996,307 - fieF OKGIIK_04550 0.58 -1.0 996,307 - fieF OKGIIK_04550 0.58 -1.3 996,307 - fieF OKGIIK_04550 0.58 +1.1 996,307 - fieF OKGIIK_04550 0.58 -1.1 996,307 - fieF OKGIIK_04550 0.58 -0.7 996,307 - fieF OKGIIK_04550 0.58 +0.5 996,398 + fieF OKGIIK_04550 0.68 +0.8 996,398 + fieF OKGIIK_04550 0.68 +1.0 996,398 + fieF OKGIIK_04550 0.68 -0.9 996,398 + fieF OKGIIK_04550 0.68 +0.8 996,398 + fieF OKGIIK_04550 0.68 -1.5 996,399 - fieF OKGIIK_04550 0.68 -1.0 996,399 - fieF OKGIIK_04550 0.68 -0.5 996,399 - fieF OKGIIK_04550 0.68 -2.5 996,399 - fieF OKGIIK_04550 0.68 +0.8 996,399 - fieF OKGIIK_04550 0.68 -0.2 996,399 - fieF OKGIIK_04550 0.68 +0.1 996,399 - fieF OKGIIK_04550 0.68 +1.0 996,458 + fieF OKGIIK_04550 0.74 +0.2 996,458 + fieF OKGIIK_04550 0.74 -0.7 996,458 + fieF OKGIIK_04550 0.74 -1.0 996,458 + fieF OKGIIK_04550 0.74 -0.3 996,458 + fieF OKGIIK_04550 0.74 +0.3 996,458 + fieF OKGIIK_04550 0.74 +0.0 996,458 + fieF OKGIIK_04550 0.74 +0.4 996,458 + fieF OKGIIK_04550 0.74 -1.5 996,458 + fieF OKGIIK_04550 0.74 -2.3 996,458 + fieF OKGIIK_04550 0.74 -1.3 996,458 + fieF OKGIIK_04550 0.74 +0.1 996,458 + fieF OKGIIK_04550 0.74 -0.2 996,458 + fieF OKGIIK_04550 0.74 +1.1 996,459 - fieF OKGIIK_04550 0.74 -0.7 996,459 - fieF OKGIIK_04550 0.74 -0.8 996,459 - fieF OKGIIK_04550 0.74 +0.4 996,459 - fieF OKGIIK_04550 0.74 -1.1 996,459 - fieF OKGIIK_04550 0.74 -0.3 996,729 + -1.2 996,871 + slp OKGIIK_04555 0.22 -0.3 996,871 + slp OKGIIK_04555 0.22 -0.1 996,871 + slp OKGIIK_04555 0.22 -0.3 996,871 + slp OKGIIK_04555 0.22 -0.3 996,871 + slp OKGIIK_04555 0.22 -0.7 996,871 + slp OKGIIK_04555 0.22 +0.8 996,871 + slp OKGIIK_04555 0.22 +1.3 996,871 + slp OKGIIK_04555 0.22 -1.3 996,871 + slp OKGIIK_04555 0.22 -0.6 996,872 - slp OKGIIK_04555 0.22 -1.2 996,872 - slp OKGIIK_04555 0.22 +0.2 996,872 - slp OKGIIK_04555 0.22 -0.2 996,872 - slp OKGIIK_04555 0.22 -2.3 996,872 - slp OKGIIK_04555 0.22 +1.1 996,872 - slp OKGIIK_04555 0.22 +0.1 996,872 - slp OKGIIK_04555 0.22 -1.6 996,872 - slp OKGIIK_04555 0.22 -0.4 996,872 - slp OKGIIK_04555 0.22 -0.8 996,946 + slp OKGIIK_04555 0.36 +0.1 996,946 + slp OKGIIK_04555 0.36 -0.8 996,947 - slp OKGIIK_04555 0.36 -0.9 996,964 + slp OKGIIK_04555 0.40 +0.8 996,964 + slp OKGIIK_04555 0.40 -1.3 996,964 + slp OKGIIK_04555 0.40 -0.3 996,965 - slp OKGIIK_04555 0.40 +2.4 997,186 + slp OKGIIK_04555 0.83 -1.5 997,186 + slp OKGIIK_04555 0.83 +0.7 997,186 + slp OKGIIK_04555 0.83 +0.1 997,186 + slp OKGIIK_04555 0.83 -0.8 997,186 + slp OKGIIK_04555 0.83 -1.8 997,186 + slp OKGIIK_04555 0.83 +0.4 997,186 + slp OKGIIK_04555 0.83 -0.2 997,186 - slp OKGIIK_04555 0.83 -0.5 997,187 - slp OKGIIK_04555 0.83 +0.7 997,187 - slp OKGIIK_04555 0.83 -2.6 997,187 - slp OKGIIK_04555 0.83 -0.1 997,187 - slp OKGIIK_04555 0.83 +0.5 997,187 - slp OKGIIK_04555 0.83 -2.3 997,187 - slp OKGIIK_04555 0.83 -1.8 997,315 + -0.1 997,316 - -1.2 997,640 - rlmJ OKGIIK_04560 0.36 +0.6 997,651 + rlmJ OKGIIK_04560 0.37 -0.3 997,652 - rlmJ OKGIIK_04560 0.37 -0.1 997,708 + rlmJ OKGIIK_04560 0.43 -0.5 997,708 + rlmJ OKGIIK_04560 0.43 +0.8 997,708 + rlmJ OKGIIK_04560 0.43 -1.0 997,708 + rlmJ OKGIIK_04560 0.43 -0.8 997,708 + rlmJ OKGIIK_04560 0.43 -1.6 997,708 + rlmJ OKGIIK_04560 0.43 +0.4 997,709 - rlmJ OKGIIK_04560 0.43 -0.8 997,709 - rlmJ OKGIIK_04560 0.43 +1.2 997,709 - rlmJ OKGIIK_04560 0.43 +0.1 997,729 + rlmJ OKGIIK_04560 0.45 +1.4 997,730 - rlmJ OKGIIK_04560 0.45 -0.8 997,730 - rlmJ OKGIIK_04560 0.45 +1.1 997,795 + rlmJ OKGIIK_04560 0.53 -0.6 997,940 - rlmJ OKGIIK_04560 0.68 -0.5 998,089 + rlmJ OKGIIK_04560 0.85 -1.2 998,119 + rlmJ OKGIIK_04560 0.88 +0.6 998,119 + rlmJ OKGIIK_04560 0.88 +0.0 998,119 + rlmJ OKGIIK_04560 0.88 -0.0 998,119 + rlmJ OKGIIK_04560 0.88 -1.2 998,119 + rlmJ OKGIIK_04560 0.88 -0.4 998,119 + rlmJ OKGIIK_04560 0.88 +1.1 998,120 - rlmJ OKGIIK_04560 0.88 -2.1 998,120 - rlmJ OKGIIK_04560 0.88 -2.3 998,120 - rlmJ OKGIIK_04560 0.88 -1.7 998,120 - rlmJ OKGIIK_04560 0.88 -0.9 998,210 - -0.8 998,221 + -1.2 998,237 + -0.0 998,237 + -0.5 998,237 + -0.2 998,237 + +1.1 998,237 + +0.2 998,237 + -0.2 998,237 + -2.0 998,237 + -0.2 998,237 + -0.2 998,238 - -1.4 998,238 - +0.0 998,238 - -0.3 998,238 - -1.2 998,238 - -1.0 998,239 + -0.8 998,239 + -0.2 998,239 + +0.7 998,239 + +0.8 998,240 - -2.1 998,240 - -2.3 998,240 - -1.2 998,240 - -1.3 998,240 - +1.0
Or see this region's nucleotide sequence